Guide to the Human Genome
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Name: LOC100288326 Sequence: fasta or formatted (86aa) NCBI GI: 239745616
Description:

PREDICTED: hypothetical protein XP_002344143

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          5           2
 C cysteine            1.2          1           1
 D aspartate           4.7          4           1
 E glutamate          12.8         11           1
 F phenylalanine       0.0          0           0
 G glycine             2.3          2           1
 H histidine           3.5          3           1
 I isoleucine          7.0          6           1
 K lysine             10.5          9           3
 L leucine             7.0          6           1
 M methionine          7.0          6           1
 N asparagine          3.5          3           1
 P proline             1.2          1           1
 Q glutamine           1.2          1           1
 R arginine            7.0          6           1
 S serine              9.3          8           1
 T threonine           4.7          4           1
 V valine              8.1          7           1
 W tryptophan          1.2          1           1
 Y tyrosine            2.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344143 
LOC100293326          1.000   PREDICTED: similar to hCG1802057 
LOC100291015          1.000   PREDICTED: hypothetical protein XP_002347719 
TIGD2                 0.082   tigger transposable element derived 2 
MGC16385              0.075   hypothetical protein LOC92806 
LOC100293487          0.062   PREDICTED: similar to cag 
LOC100291289          0.062   PREDICTED: hypothetical protein XP_002347296 
LOC100287896          0.062   PREDICTED: hypothetical protein XP_002343159 
TIGD7                 0.055   tigger transposable element derived 7 
TIGD1                 0.055   hypothetical protein LOC200765 
JRK                   0.048   jerky isoform a 
JRK                   0.048   jerky isoform b 
TIGD6                 0.041   hypothetical protein LOC81789 
CCDC146               0.034   coiled-coil domain containing 146 
JRKL                  0.027   jerky homolog-like 
YTHDF1                0.021   YTH domain family, member 1 
DCDC2                 0.021   doublecortin domain containing 2 
DDX60                 0.021   DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 
SYNE1                 0.014   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.014   spectrin repeat containing, nuclear envelope 1 isof...
HEATR7B1              0.014   PREDICTED: HEAT repeat containing 7B1 
HEATR7B1              0.014   PREDICTED: HEAT repeat containing 7B1 
SNX27                 0.014   sorting nexin family member 27 
DDX12                 0.014   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho...
HISPPD2A              0.014   histidine acid phosphatase domain containing 2A iso...
HISPPD2A              0.014   histidine acid phosphatase domain containing 2A iso...
HISPPD2A              0.014   histidine acid phosphatase domain containing 2A isof...
HISPPD2A              0.014   histidine acid phosphatase domain containing 2A isof...
SRFBP1                0.014   serum response factor binding protein 1 
CCDC150               0.014   coiled-coil domain containing 150 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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