JRK 2047

Name: JRK	Sequence: fasta or formatted (556aa)		NCBI GI: 117938295
Description: jerky isoform b		Referenced in: DNA Transposon and Retrovirus-related Sequences
Other entries for this name: alt prot [568aa] jerky isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.0 61 2 C cysteine 2.2 12 2 D aspartate 3.6 20 1 E glutamate 8.6 48 3 F phenylalanine 5.0 28 2 G glycine 6.8 38 3 H histidine 2.9 16 2 I isoleucine 2.9 16 1 K lysine 5.9 33 2 L leucine 8.1 45 3 M methionine 1.6 9 1 N asparagine 2.3 13 1 P proline 6.3 35 2 Q glutamine 4.9 27 3 R arginine 6.7 37 2 S serine 7.7 43 3 T threonine 3.2 18 1 V valine 6.8 38 3 W tryptophan 2.2 12 1 Y tyrosine 1.3 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 jerky isoform b JRK 0.949 jerky isoform a JRKL 0.253 jerky homolog-like TIGD2 0.238 tigger transposable element derived 2 TIGD7 0.157 tigger transposable element derived 7 TIGD1 0.131 hypothetical protein LOC200765 TIGD5 0.121 tigger transposable element derived 5 LOC100293487 0.106 PREDICTED: similar to cag LOC100291289 0.106 PREDICTED: hypothetical protein XP_002347296 LOC100287896 0.106 PREDICTED: hypothetical protein XP_002343159 TIGD4 0.103 tigger transposable element derived 4 TIGD6 0.094 hypothetical protein LOC81789 CENPB 0.075 centromere protein B TIGD3 0.051 tigger transposable element derived 3 MGC16385 0.019 hypothetical protein LOC92806 POGZ 0.016 pogo transposable element with ZNF domain isoform 1 ... POGZ 0.016 pogo transposable element with ZNF domain isoform 2 ... HOMER3 0.010 Homer, neuronal immediate early gene, 3 isoform 3 [... HOMER3 0.010 Homer, neuronal immediate early gene, 3 isoform 1 [... HOMER3 0.010 Homer, neuronal immediate early gene, 3 isoform 2 [... HOMER3 0.010 Homer, neuronal immediate early gene, 3 isoform 1 [... SHROOM4 0.008 shroom family member 4 LOC730254 0.007 PREDICTED: hypothetical protein LOC730254 0.007 PREDICTED: hypothetical protein KCNC1 0.007 Shaw-related voltage-gated potassium channel protein ... KCNC1 0.007 Shaw-related voltage-gated potassium channel protei... DCHS2 0.006 dachsous 2 isoform 1 LOC100293326 0.006 PREDICTED: similar to hCG1802057 LOC100291015 0.006 PREDICTED: hypothetical protein XP_002347719 LOC100288326 0.006 PREDICTED: hypothetical protein XP_002344143 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.