Guide to the Human Genome
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Name: TIGD6 Sequence: fasta or formatted (521aa) NCBI GI: 13569924
Description:

hypothetical protein LOC81789

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         44           3
 C cysteine            2.3         12           2
 D aspartate           7.3         38           3
 E glutamate           6.1         32           2
 F phenylalanine       3.6         19           2
 G glycine             5.2         27           2
 H histidine           2.3         12           1
 I isoleucine          7.3         38           2
 K lysine              7.5         39           2
 L leucine             9.0         47           3
 M methionine          2.9         15           1
 N asparagine          4.4         23           1
 P proline             3.3         17           1
 Q glutamine           4.8         25           1
 R arginine            5.2         27           2
 S serine              6.0         31           2
 T threonine           5.0         26           1
 V valine              6.1         32           2
 W tryptophan          1.9         10           2
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC81789 
TIGD4                 0.256   tigger transposable element derived 4 
CENPB                 0.173   centromere protein B 
TIGD7                 0.161   tigger transposable element derived 7 
JRKL                  0.149   jerky homolog-like 
TIGD2                 0.136   tigger transposable element derived 2 
TIGD1                 0.132   hypothetical protein LOC200765 
TIGD5                 0.103   tigger transposable element derived 5 
JRK                   0.102   jerky isoform a 
JRK                   0.102   jerky isoform b 
TIGD3                 0.101   tigger transposable element derived 3 
POGK                  0.046   pogo transposable element with KRAB domain 
LOC100293487          0.040   PREDICTED: similar to cag 
LOC100291289          0.040   PREDICTED: hypothetical protein XP_002347296 
LOC100287896          0.040   PREDICTED: hypothetical protein XP_002343159 
MGC16385              0.026   hypothetical protein LOC92806 
ZFY                   0.007   zinc finger protein, Y-linked isoform 1 
ZFY                   0.007   zinc finger protein, Y-linked isoform 2 
LOC100293326          0.006   PREDICTED: similar to hCG1802057 
LOC100291015          0.006   PREDICTED: hypothetical protein XP_002347719 
LOC100288326          0.006   PREDICTED: hypothetical protein XP_002344143 
SPAG5                 0.006   sperm associated antigen 5 
CCDC66                0.005   coiled-coil domain containing 66 isoform 1 
CCDC66                0.005   coiled-coil domain containing 66 isoform 2 
ARID4B                0.005   AT rich interactive domain 4B isoform 2 
ARID4B                0.005   AT rich interactive domain 4B isoform 1 
GCH1                  0.004   GTP cyclohydrolase 1 isoform 3 
GCH1                  0.004   GTP cyclohydrolase 1 isoform 2 
GCH1                  0.004   GTP cyclohydrolase 1 isoform 1 
GCH1                  0.004   GTP cyclohydrolase 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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