TIGD4 14394

Name: TIGD4	Sequence: fasta or formatted (512aa)		NCBI GI: 22219477
Description: tigger transposable element derived 4		Referenced in: DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 36 2 C cysteine 2.3 12 1 D aspartate 6.4 33 3 E glutamate 8.0 41 2 F phenylalanine 4.9 25 2 G glycine 5.3 27 1 H histidine 1.2 6 1 I isoleucine 4.5 23 2 K lysine 9.8 50 4 L leucine 10.2 52 2 M methionine 2.1 11 1 N asparagine 4.3 22 1 P proline 4.5 23 1 Q glutamine 2.3 12 2 R arginine 3.9 20 2 S serine 8.0 41 2 T threonine 5.3 27 1 V valine 6.1 31 2 W tryptophan 1.2 6 1 Y tyrosine 2.7 14 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tigger transposable element derived 4 TIGD6 0.261 hypothetical protein LOC81789 CENPB 0.158 centromere protein B TIGD3 0.150 tigger transposable element derived 3 JRKL 0.147 jerky homolog-like TIGD2 0.138 tigger transposable element derived 2 TIGD7 0.132 tigger transposable element derived 7 JRK 0.114 jerky isoform a JRK 0.114 jerky isoform b TIGD1 0.112 hypothetical protein LOC200765 TIGD5 0.078 tigger transposable element derived 5 LOC100293487 0.046 PREDICTED: similar to cag LOC100291289 0.046 PREDICTED: hypothetical protein XP_002347296 LOC100287896 0.046 PREDICTED: hypothetical protein XP_002343159 POGK 0.040 pogo transposable element with KRAB domain MGC16385 0.029 hypothetical protein LOC92806 CNO 0.010 cappuccino ZNF697 0.009 zinc finger protein 697 FRYL 0.008 furry-like IRX2 0.008 iroquois homeobox 2 IRX2 0.008 iroquois homeobox 2 LARP1 0.008 la related protein isoform 2 LARP1 0.008 la related protein isoform 1 AATF 0.007 apoptosis antagonizing transcription factor TRPS1 0.007 zinc finger transcription factor TRPS1 TSHZ2 0.007 teashirt zinc finger homeobox 2 RBM19 0.006 RNA binding motif protein 19 RBM19 0.006 RNA binding motif protein 19 RBM19 0.006 RNA binding motif protein 19 USP5 0.006 ubiquitin specific peptidase 5 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.