Guide to the Human Genome
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Name: LOC440577 Sequence: fasta or formatted (186aa) NCBI GI: 169162829
Description:

PREDICTED: similar to nucleophosmin 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [186aa] PREDICTED: similar to nucleophosmin 1
alt mRNA [186aa] PREDICTED: similar to nucleophosmin 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         11           1
 C cysteine            1.1          2           1
 D aspartate          14.0         26          12
 E glutamate          10.8         20           4
 F phenylalanine       2.7          5           1
 G glycine             7.0         13           3
 H histidine           2.7          5           1
 I isoleucine          3.2          6           1
 K lysine              9.1         17           2
 L leucine             8.1         15           2
 M methionine          2.7          5           1
 N asparagine          2.2          4           1
 P proline             5.4         10           2
 Q glutamine           2.7          5           1
 R arginine            2.2          4           1
 S serine              7.5         14           1
 T threonine           3.2          6           1
 V valine              8.6         16           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to nucleophosmin 1 
LOC440577             1.000   PREDICTED: similar to nucleophosmin 1 
LOC440577             1.000   PREDICTED: similar to nucleophosmin 1 
NPM1                  0.943   nucleophosmin 1 isoform 3 
NPM1                  0.943   nucleophosmin 1 isoform 1 
NPM1                  0.934   nucleophosmin 1 isoform 2 
NPM3                  0.214   nucleophosmin/nucleoplasmin 3 
NPM2                  0.149   nucleoplasmin 2 
NCL                   0.089   nucleolin 
UBTF                  0.066   upstream binding transcription factor, RNA polymera...
UBTF                  0.066   upstream binding transcription factor, RNA polymera...
UBTF                  0.066   upstream binding transcription factor, RNA polymerase...
ATAD2                 0.057   ATPase family, AAA domain containing 2 
CASZ1                 0.057   castor homolog 1, zinc finger isoform a 
EIF3CL                0.057   eukaryotic translation initiation factor 3, subunit...
EIF3C                 0.057   eukaryotic translation initiation factor 3, subunit ...
EIF3C                 0.057   eukaryotic translation initiation factor 3, subunit C...
RNF34                 0.049   ring finger protein 34 isoform 1 
RNF34                 0.049   ring finger protein 34 isoform 2 
ASPN                  0.049   asporin 
CENPB                 0.046   centromere protein B 
HRC                   0.046   histidine rich calcium binding protein precursor [Hom...
C19orf2               0.043   RPB5-mediating protein isoform b 
C19orf2               0.043   RPB5-mediating protein isoform a 
ZBTB7C                0.043   zinc finger and BTB domain containing 7C 
LOC100288514          0.043   PREDICTED: hypothetical protein 
LOC100288514          0.043   PREDICTED: hypothetical protein XP_002343198 
HIVEP2                0.043   human immunodeficiency virus type I enhancer bindin...
MTERFD2               0.040   MTERF domain containing 2 
HMGB1L1               0.040   high-mobility group box 1-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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