Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239755593
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755593 PREDICTED: similar to hCG2018832 [Homo sapiens]
(212 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755593 PREDICTED: similar to hCG2018832 [Homo sapiens] 438 e-123
gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 36 0.021
gi|197333868 T-box 2 [Homo sapiens] 35 0.047
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 35 0.047
gi|4504211 guanylate cyclase 1, soluble, alpha 2 [Homo sapiens] 35 0.061
gi|108773787 retinoblastoma 1 [Homo sapiens] 34 0.10
gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo ... 33 0.18
gi|22749337 THAP domain containing 8 [Homo sapiens] 33 0.18
gi|78000171 sorbin and SH3 domain containing 1 isoform 7 [Homo s... 31 0.68
gi|78000169 sorbin and SH3 domain containing 1 isoform 6 [Homo s... 31 0.68
gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo s... 31 0.68
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 31 0.68
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 31 0.68
gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo sa... 31 0.68
gi|78000160 sorbin and SH3 domain containing 1 isoform 1 [Homo s... 31 0.68
gi|21955174 kinesin family member C2 [Homo sapiens] 31 0.68
gi|6912752 zinc finger protein 281 [Homo sapiens] 31 0.68
gi|142976757 immediate early response 5 [Homo sapiens] 31 0.89
gi|169163053 PREDICTED: hypothetical protein, partial [Homo sapi... 31 0.89
gi|171543895 ataxin 2 [Homo sapiens] 31 0.89
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 31 0.89
gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens] 30 1.2
gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens] 30 1.2
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|71274154 Scm-like with four mbt domains 2 [Homo sapiens] 30 1.2
gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ... 30 1.5
gi|239752704 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|239747246 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
>gi|239755593 PREDICTED: similar to hCG2018832 [Homo sapiens]
Length = 212
Score = 438 bits (1127), Expect = e-123
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MANLLTEGTQSDQGGLGQKRLLQRFKDSHNWCCDGATGTSTVQAIPISRDPRGSGRLWQW 60
MANLLTEGTQSDQGGLGQKRLLQRFKDSHNWCCDGATGTSTVQAIPISRDPRGSGRLWQW
Sbjct: 1 MANLLTEGTQSDQGGLGQKRLLQRFKDSHNWCCDGATGTSTVQAIPISRDPRGSGRLWQW 60
Query: 61 GRLAVLKTEGFANLGVELLDAISPQQGFLARETACWGAERSTSPRSTPLAFWAAPPPTRA 120
GRLAVLKTEGFANLGVELLDAISPQQGFLARETACWGAERSTSPRSTPLAFWAAPPPTRA
Sbjct: 61 GRLAVLKTEGFANLGVELLDAISPQQGFLARETACWGAERSTSPRSTPLAFWAAPPPTRA 120
Query: 121 RALTSSAEPDSEPPPETLQEGRPWRREPASIDACRLNFQRLRRRKFSNVLFPGLAQEALY 180
RALTSSAEPDSEPPPETLQEGRPWRREPASIDACRLNFQRLRRRKFSNVLFPGLAQEALY
Sbjct: 121 RALTSSAEPDSEPPPETLQEGRPWRREPASIDACRLNFQRLRRRKFSNVLFPGLAQEALY 180
Query: 181 SGGYHLKFADELMGGNLKKSTADASGSRGHQL 212
SGGYHLKFADELMGGNLKKSTADASGSRGHQL
Sbjct: 181 SGGYHLKFADELMGGNLKKSTADASGSRGHQL 212
>gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 753
Score = 36.2 bits (82), Expect = 0.021
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 29 HNWCCDG-ATGTSTVQAIPISRDPRGSGRLWQWGRLAVLKTEGFANLGVELLDAISPQQG 87
H W +G A GT +V ++ R RG WGR + L P +G
Sbjct: 232 HPWAAEGPARGTPSVGSL-WKRRARGRQLNRPWGRARLA------------LQGAPPSRG 278
Query: 88 FLARETACWGAERSTSPRSTPLAFWAAPPPTRARA 122
A AC G R+ S P A WA P R A
Sbjct: 279 TSAATAACTGRARAARAVSLPRACWAGPAKVRVLA 313
>gi|197333868 T-box 2 [Homo sapiens]
Length = 712
Score = 35.0 bits (79), Expect = 0.047
Identities = 33/87 (37%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 105 RSTPLAFWAAPPPTR---ARALTSSAEPDSEPPPETLQE---GRPWRREPA--SIDACRL 156
R P + AAP P R ARA S DS+P PE L E G P R PA S RL
Sbjct: 331 REPPTSPGAAPSPLRLHRARAEEKSCAADSDPEPERLSEERAGAPLGRSPAPDSASPTRL 390
Query: 157 NFQRLRRRKFSNVLFPGLAQEALYSGG 183
R + S P +E SGG
Sbjct: 391 TEPERARERRS----PERGKEPAESGG 413
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 35.0 bits (79), Expect = 0.047
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 114 APPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASIDACRLNFQRLRRRKFSNVLFPG 173
+PPP R R SS EP E + GR R+ +++ ACR+ + L + N L
Sbjct: 92 SPPPGRKR---SSREPQRE------RSGRSRSRKISALKACRILLRELEETRDLNYLLES 142
Query: 174 LAQEALYSGGYHLKFADELMGGNLKKSTADASGSRG 209
++ G HL + +G K A A G
Sbjct: 143 HLRKLAGEGSSHLPLGGDPLGDVCKPVPAKAHQPHG 178
>gi|4504211 guanylate cyclase 1, soluble, alpha 2 [Homo sapiens]
Length = 732
Score = 34.7 bits (78), Expect = 0.061
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 66 LKTEGFANLGVELLDAISPQQGFLARETACWGAERS----TSPRSTPLAFWAAPPPTRAR 121
+ +E F++LG + L+ ++G CW RS P A AAP PT A
Sbjct: 6 ISSESFSSLGSDYLETSPEEEGECPLSRLCWNGSRSPPGPLEPSPAAAAAAAAPAPTPAA 65
Query: 122 ALTSSAEPDSEPPPETLQEGRPWRREPASIDACRLNFQRL 161
+ ++A T R RR ++D+ + RL
Sbjct: 66 SAAAAA--------ATAGARRVQRRRRVNLDSLGESISRL 97
>gi|108773787 retinoblastoma 1 [Homo sapiens]
Length = 928
Score = 33.9 bits (76), Expect = 0.10
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 115 PPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASIDACRLNFQRLRRRKFS----NVL 170
P T A A ++AEP + PPP +E P + RL F+ F+ +
Sbjct: 6 PRKTAATAAAAAAEPPAPPPPPPPEEDPEQDSGPEDLPLVRLEFEETEEPDFTALCQKLK 65
Query: 171 FPGLAQEALYSGGYHLKFADELMGGNLKK 199
P +E + + D ++GG ++K
Sbjct: 66 IPDHVRERAWLTWEKVSSVDGVLGGYIQK 94
>gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo
sapiens]
Length = 233
Score = 33.1 bits (74), Expect = 0.18
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 19/88 (21%)
Query: 91 RETACWGAERSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEGRPWRREPAS 150
R A WG ER PR L+FW P A + A P S P + ++GR + R
Sbjct: 158 RPPARWGNER---PR---LSFWF--PRLPAWGVRGGAGPASPEPAQRARQGRGFSR---- 205
Query: 151 IDACRLNFQRLRRRKFSNVLFPGLAQEA 178
F +RRRK PGL E+
Sbjct: 206 -------FTPVRRRKLVGAATPGLGPES 226
>gi|22749337 THAP domain containing 8 [Homo sapiens]
Length = 274
Score = 33.1 bits (74), Expect = 0.18
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 96 WGAERSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEGRPWRREPA 149
WG R P + P F PP R S+ +P S PPP LQ+ P + PA
Sbjct: 71 WGV-RYLRPDAVPSIFSRGPPAKSQRRTRSTQKPVSPPPP--LQKNTPLPQSPA 121
>gi|78000171 sorbin and SH3 domain containing 1 isoform 7 [Homo
sapiens]
Length = 740
Score = 31.2 bits (69), Expect = 0.68
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 115 PPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASI 151
P P R+ +L SS+E + PP+ + R +R EP SI
Sbjct: 289 PLPARSSSLKSSSERNDWEPPDKKVDTRKYRAEPKSI 325
>gi|78000169 sorbin and SH3 domain containing 1 isoform 6 [Homo
sapiens]
Length = 781
Score = 31.2 bits (69), Expect = 0.68
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 115 PPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASI 151
P P R+ +L SS+E + PP+ + R +R EP SI
Sbjct: 330 PLPARSSSLKSSSERNDWEPPDKKVDTRKYRAEPKSI 366
>gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo
sapiens]
Length = 905
Score = 31.2 bits (69), Expect = 0.68
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 115 PPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASI 151
P P R+ +L SS+E + PP+ + R +R EP SI
Sbjct: 384 PLPARSSSLKSSSERNDWEPPDKKVDTRKYRAEPKSI 420
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 31.2 bits (69), Expect = 0.68
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 115 PPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASI 151
P P R+ +L SS+E + PP+ + R +R EP SI
Sbjct: 521 PLPARSSSLKSSSERNDWEPPDKKVDTRKYRAEPKSI 557
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 31.2 bits (69), Expect = 0.68
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 115 PPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASI 151
P P R+ +L SS+E + PP+ + R +R EP SI
Sbjct: 499 PLPARSSSLKSSSERNDWEPPDKKVDTRKYRAEPKSI 535
>gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo
sapiens]
Length = 816
Score = 31.2 bits (69), Expect = 0.68
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 115 PPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASI 151
P P R+ +L SS+E + PP+ + R +R EP SI
Sbjct: 421 PLPARSSSLKSSSERNDWEPPDKKVDTRKYRAEPKSI 457
>gi|78000160 sorbin and SH3 domain containing 1 isoform 1 [Homo
sapiens]
Length = 684
Score = 31.2 bits (69), Expect = 0.68
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 115 PPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASI 151
P P R+ +L SS+E + PP+ + R +R EP SI
Sbjct: 289 PLPARSSSLKSSSERNDWEPPDKKVDTRKYRAEPKSI 325
>gi|21955174 kinesin family member C2 [Homo sapiens]
Length = 838
Score = 31.2 bits (69), Expect = 0.68
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 103 SPRSTPLAFWAAPPPTRARALTS------SAEPDSEPPPETLQEGRPWRR 146
+P PLA AP PT ARA S + P S P P L+ G W+R
Sbjct: 788 APLRRPLAVLHAPVPTTARARLSRPQRACPSSPGSRPCPWGLRPGLCWQR 837
>gi|6912752 zinc finger protein 281 [Homo sapiens]
Length = 895
Score = 31.2 bits (69), Expect = 0.68
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 113 AAPPPTRARALTSSAEPDSEPPPETLQEGRPWRREPAS 150
AAPPP + ++SA P +EPPP + +++EPA+
Sbjct: 70 AAPPPQCVLSSSTSAAPAAEPPPPPAPD-MTFKKEPAA 106
>gi|142976757 immediate early response 5 [Homo sapiens]
Length = 327
Score = 30.8 bits (68), Expect = 0.89
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 104 PRSTPLAFWAAPPPTRARALTSSAEPDSEPPPE 136
P + P A W PPP ARA + P++EP PE
Sbjct: 75 PAAGPPAGWGEPPPPAARA----SWPETEPQPE 103
>gi|169163053 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 300
Score = 30.8 bits (68), Expect = 0.89
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 84 PQQGFLARETACWGAERSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEGRP 143
P Q A E W A + P P+ P R + S P P ++ G P
Sbjct: 197 PFQARRAAELTPWAAHVGSGPSRPPV-----PGRQPLRHHRTHCVVISGPSPALVRPGVP 251
Query: 144 WRREPASIDACRLNFQRLRRRKFSNVLFPGLAQEALYSGGYHL 186
W RE A R + +RL + GLAQ ++ +H+
Sbjct: 252 WGRETGKDGAPRGSDKRLSPSQ-------GLAQGVTFTSSFHM 287
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 30.8 bits (68), Expect = 0.89
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 91 RETACWGAERSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEGRPW 144
RE WG+ R SPR + P+R+ + TS P+S + G PW
Sbjct: 501 REVISWGSGRQNSPRMGQPG--SGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPW 552
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 30.8 bits (68), Expect = 0.89
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 23/79 (29%)
Query: 91 RETACWGAERSTSPR---------STPLAFWAAPPPTRARALTSSAEPDS--------EP 133
R TA W + + P STP A+PPP+ A T AEP S EP
Sbjct: 989 RATAFWTSTSDSEPPASGDLCSEPSTP----ASPPPSEEGARTGPAEPVSQAEATSTGEP 1044
Query: 134 PPETLQEGRPWRREPASID 152
PP + PW +P S++
Sbjct: 1045 PPGSGGLALPW--DPHSLE 1061
>gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens]
Length = 1227
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 100 RSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEG------------RPWRRE 147
R+++ R P A PP A A PD E P + G R R
Sbjct: 91 RASASRPQPAPADGADPPP---AEEPEARPDGEGSPGKARPGTARRPGAAASGERDDRGP 147
Query: 148 PASIDACRLNFQRLRR 163
PAS+ A R NF+R+R+
Sbjct: 148 PASVAALRSNFERIRK 163
>gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens]
Length = 1271
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 100 RSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEG------------RPWRRE 147
R+++ R P A PP A A PD E P + G R R
Sbjct: 91 RASASRPQPAPADGADPPP---AEEPEARPDGEGSPGKARPGTARRPGAAASGERDDRGP 147
Query: 148 PASIDACRLNFQRLRR 163
PAS+ A R NF+R+R+
Sbjct: 148 PASVAALRSNFERIRK 163
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 93 TACWGAERSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPET 137
T+C A RS + R A W P T A A + + PD P P T
Sbjct: 155 TSCHWARRSCALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWT 199
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 93 TACWGAERSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPET 137
T+C A RS + R A W P T A A + + PD P P T
Sbjct: 155 TSCHWARRSCALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWT 199
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 93 TACWGAERSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPET 137
T+C A RS + R A W P T A A + + PD P P T
Sbjct: 155 TSCHWARRSCALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWT 199
>gi|71274154 Scm-like with four mbt domains 2 [Homo sapiens]
Length = 894
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 97 GAERSTSPRSTPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEGR 142
G+E T A + P RA L S +EP PPPE + GR
Sbjct: 737 GSELRDDQTDTSSAEVPSARPRRAVTLRSGSEPVRRPPPERTRRGR 782
>gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
[Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 51 PRGSGRLWQWGRLAVLKTEGFANLGVELLDAISPQQGFLARETACWGAERSTSPRSTPLA 110
P+GS R QW + L T+ LD P +CW R+ S P
Sbjct: 318 PQGSWRFLQWNSMPRLPTD---------LDVGDPWFRRYDFRQSCW--VRAISQEDQPAT 366
Query: 111 FWAAP-PPTRARALTSSAEPDSEPPPETLQEGRPWR 145
W A P R R+ S+ DS+ +G P+R
Sbjct: 367 CWQAEHPAERVRSAFSAPSTDSD-------QGTPFR 395
>gi|239752704 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 30.0 bits (66), Expect = 1.5
Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 26/110 (23%)
Query: 46 PISRDPRGSGRLWQWGRLAVLKTEGFANLGVELLDAISPQQGFLARETACWGAERSTSPR 105
P+SR P G W W L T A G G +R A W S S R
Sbjct: 18 PMSR-PEG----WGWDHRQPLVTHSGALSG-----------GLGSRPAATWSWCHSCSAR 61
Query: 106 STPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASIDACR 155
PL+ WA S A P S P + + G + R S ACR
Sbjct: 62 --PLSMWATS--------ASPARPSSVRPSASRRPGTLFTRSRGSSQACR 101
>gi|239747246 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 30.0 bits (66), Expect = 1.5
Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 26/110 (23%)
Query: 46 PISRDPRGSGRLWQWGRLAVLKTEGFANLGVELLDAISPQQGFLARETACWGAERSTSPR 105
P+SR P G W W L T A G G +R A W S S R
Sbjct: 18 PMSR-PEG----WGWDHRQPLVTHSGALSG-----------GLGSRPAATWSWCHSCSAR 61
Query: 106 STPLAFWAAPPPTRARALTSSAEPDSEPPPETLQEGRPWRREPASIDACR 155
PL+ WA S A P S P + + G + R S ACR
Sbjct: 62 --PLSMWATS--------ASPARPSSVRPSASRRPGTLFTRSRGSSQACR 101
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,405,573
Number of Sequences: 37866
Number of extensions: 479726
Number of successful extensions: 2638
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2515
Number of HSP's gapped (non-prelim): 178
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.