Guide to the Human Genome
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Name: SFMBT2 Sequence: fasta or formatted (894aa) NCBI GI: 71274154
Description:

Scm-like with four mbt domains 2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         53           2
 C cysteine            3.1         28           2
 D aspartate           5.3         47           3
 E glutamate           7.9         71           4
 F phenylalanine       3.6         32           2
 G glycine             5.9         53           2
 H histidine           2.0         18           1
 I isoleucine          4.0         36           2
 K lysine              6.6         59           2
 L leucine             8.8         79           4
 M methionine          1.8         16           1
 N asparagine          3.9         35           2
 P proline             7.6         68           3
 Q glutamine           3.7         33           1
 R arginine            5.6         50           3
 S serine              6.9         62           3
 T threonine           5.7         51           2
 V valine              6.8         61           2
 W tryptophan          1.7         15           1
 Y tyrosine            3.0         27           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Scm-like with four mbt domains 2 
SFMBT1                0.509   Scm-like with four mbt domains 1 
SFMBT1                0.509   Scm-like with four mbt domains 1 
SFMBT1                0.509   Scm-like with four mbt domains 1 
L3MBTL2               0.123   l(3)mbt-like 2 
MBTD1                 0.110   mbt domain containing 1 
L3MBTL                0.066   l(3)mbt-like isoform I 
L3MBTL                0.066   l(3)mbt-like isoform II 
L3MBTL3               0.062   l(3)mbt-like 3 isoform b 
L3MBTL3               0.062   l(3)mbt-like 3 isoform a 
L3MBTL4               0.057   l(3)mbt-like 4 
SCML2                 0.056   sex comb on midleg-like 2 
SCML4                 0.042   sex comb on midleg-like 4 
SCMH1                 0.039   sex comb on midleg 1 isoform 1 
SCMH1                 0.039   sex comb on midleg 1 isoform 2 
PHC1                  0.023   polyhomeotic 1-like 
SCML1                 0.021   sex comb on midleg-like 1 isoform a 
SCML1                 0.021   sex comb on midleg-like 1 isoform c 
SCML1                 0.021   sex comb on midleg-like 1 isoform c 
SCML1                 0.021   sex comb on midleg-like 1 isoform b 
PHC3                  0.020   polyhomeotic like 3 
SAMD11                0.020   sterile alpha motif domain containing 11 
PHC2                  0.020   polyhomeotic-like 2 isoform b 
PHC2                  0.020   polyhomeotic-like 2 isoform a 
SAMD1                 0.019   sterile alpha motif domain containing 1 
SAMD13                0.017   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.017   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.017   sterile alpha motif domain containing 13 isoform 1 [...
SAMD7                 0.017   sterile alpha motif domain containing 7 
AP3B2                 0.009   adaptor-related protein complex 3, beta 2 subunit [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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