Guide to the Human Genome
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Name: SORBS1 Sequence: fasta or formatted (684aa) NCBI GI: 78000160
Description:

sorbin and SH3 domain containing 1 isoform 1

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [816aa] sorbin and SH3 domain containing 1 isoform 2
alt prot [1292aa] sorbin and SH3 domain containing 1 isoform 3
alt prot [1151aa] sorbin and SH3 domain containing 1 isoform 4
alt prot [905aa] sorbin and SH3 domain containing 1 isoform 5
alt prot [781aa] sorbin and SH3 domain containing 1 isoform 6
alt prot [740aa] sorbin and SH3 domain containing 1 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         34           2
 C cysteine            0.4          3           1
 D aspartate           7.3         50           3
 E glutamate           6.7         46           2
 F phenylalanine       2.6         18           1
 G glycine             5.4         37           2
 H histidine           1.3          9           2
 I isoleucine          4.2         29           1
 K lysine              7.2         49           2
 L leucine             6.6         45           2
 M methionine          1.6         11           1
 N asparagine          3.1         21           1
 P proline             8.0         55           2
 Q glutamine           5.1         35           2
 R arginine            6.7         46           3
 S serine             13.5         92           3
 T threonine           5.3         36           2
 V valine              5.1         35           2
 W tryptophan          0.9          6           1
 Y tyrosine            3.9         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorbin and SH3 domain containing 1 isoform 1 
SORBS1                0.973   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.955   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.903   sorbin and SH3 domain containing 1 isoform 5 
SORBS1                0.842   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.633   sorbin and SH3 domain containing 1 isoform 3 
SORBS1                0.451   sorbin and SH3 domain containing 1 isoform 4 
SORBS2                0.301   sorbin and SH3 domain containing 2 isoform 3 
SORBS2                0.296   sorbin and SH3 domain containing 2 isoform 5 
SORBS2                0.288   sorbin and SH3 domain containing 2 isoform 1 
SORBS2                0.284   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.280   sorbin and SH3 domain containing 2 isoform 4 
SORBS2                0.260   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.202   sorbin and SH3 domain containing 2 isoform 7 
SORBS2                0.202   sorbin and SH3 domain containing 2 isoform 2 
SORBS3                0.192   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.186   sorbin and SH3 domain containing 3 isoform 2 
SH3D19                0.063   SH3 domain containing 19 isoform a 
SH3D19                0.061   SH3 domain containing 19 isoform b 
SH3D19                0.060   SH3 domain containing 19 isoform c 
SH3KBP1               0.052   SH3-domain kinase binding protein 1 isoform a 
C1orf113              0.050   SH3 domain-containing protein C1orf113 isoform 1 [H...
SH3RF3                0.044   SH3 domain containing ring finger 3 
ITSN1                 0.043   intersectin 1 isoform ITSN-s 
ITSN1                 0.043   intersectin 1 isoform ITSN-l 
SH3RF1                0.042   SH3 domain containing ring finger 1 
GRB2                  0.042   growth factor receptor-bound protein 2 isoform 1 [Hom...
DNMBP                 0.041   dynamin binding protein 
SH3RF2                0.041   SH3 domain containing ring finger 2 
CD2AP                 0.040   CD2-associated protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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