Guide to the Human Genome
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Name: SORBS1 Sequence: fasta or formatted (905aa) NCBI GI: 78000167
Description:

sorbin and SH3 domain containing 1 isoform 5

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [816aa] sorbin and SH3 domain containing 1 isoform 2
alt prot [684aa] sorbin and SH3 domain containing 1 isoform 1
alt prot [1292aa] sorbin and SH3 domain containing 1 isoform 3
alt prot [1151aa] sorbin and SH3 domain containing 1 isoform 4
alt prot [781aa] sorbin and SH3 domain containing 1 isoform 6
alt prot [740aa] sorbin and SH3 domain containing 1 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         51           2
 C cysteine            0.4          4           1
 D aspartate           7.1         64           3
 E glutamate           7.0         63           2
 F phenylalanine       2.8         25           2
 G glycine             5.2         47           2
 H histidine           1.8         16           2
 I isoleucine          4.5         41           2
 K lysine              7.0         63           2
 L leucine             7.0         63           2
 M methionine          1.2         11           1
 N asparagine          2.8         25           1
 P proline             9.1         82           4
 Q glutamine           4.4         40           2
 R arginine            7.0         63           3
 S serine             12.8        116           3
 T threonine           5.3         48           2
 V valine              4.9         44           2
 W tryptophan          1.0          9           1
 Y tyrosine            3.3         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorbin and SH3 domain containing 1 isoform 5 
SORBS1                0.819   sorbin and SH3 domain containing 1 isoform 3 
SORBS1                0.801   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.745   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.718   sorbin and SH3 domain containing 1 isoform 4 
SORBS1                0.712   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.664   sorbin and SH3 domain containing 1 isoform 1 
SORBS2                0.231   sorbin and SH3 domain containing 2 isoform 1 
SORBS2                0.208   sorbin and SH3 domain containing 2 isoform 4 
SORBS2                0.204   sorbin and SH3 domain containing 2 isoform 5 
SORBS2                0.197   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.185   sorbin and SH3 domain containing 2 isoform 3 
SORBS2                0.175   sorbin and SH3 domain containing 2 isoform 8 
SORBS3                0.154   sorbin and SH3 domain containing 3 isoform 1 
SORBS2                0.144   sorbin and SH3 domain containing 2 isoform 7 
SORBS2                0.144   sorbin and SH3 domain containing 2 isoform 2 
SORBS3                0.137   sorbin and SH3 domain containing 3 isoform 2 
SH3RF2                0.045   SH3 domain containing ring finger 2 
SH3D19                0.042   SH3 domain containing 19 isoform c 
SH3D19                0.042   SH3 domain containing 19 isoform b 
SH3D19                0.042   SH3 domain containing 19 isoform a 
SH3KBP1               0.038   SH3-domain kinase binding protein 1 isoform a 
SH3RF3                0.037   SH3 domain containing ring finger 3 
C1orf113              0.035   SH3 domain-containing protein C1orf113 isoform 1 [H...
CD2AP                 0.032   CD2-associated protein 
ITSN2                 0.032   intersectin 2 isoform 3 
ITSN2                 0.032   intersectin 2 isoform 1 
ITSN2                 0.032   intersectin 2 isoform 2 
SH3RF1                0.032   SH3 domain containing ring finger 1 
ITSN1                 0.028   intersectin 1 isoform ITSN-s 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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