Guide to the Human Genome
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Name: SORBS1 Sequence: fasta or formatted (1292aa) NCBI GI: 78000163
Description:

sorbin and SH3 domain containing 1 isoform 3

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [816aa] sorbin and SH3 domain containing 1 isoform 2
alt prot [684aa] sorbin and SH3 domain containing 1 isoform 1
alt prot [1151aa] sorbin and SH3 domain containing 1 isoform 4
alt prot [905aa] sorbin and SH3 domain containing 1 isoform 5
alt prot [781aa] sorbin and SH3 domain containing 1 isoform 6
alt prot [740aa] sorbin and SH3 domain containing 1 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         81           2
 C cysteine            0.6          8           1
 D aspartate           6.2         80           3
 E glutamate           6.9         89           2
 F phenylalanine       2.6         34           2
 G glycine             5.5         71           2
 H histidine           1.9         25           2
 I isoleucine          3.9         51           2
 K lysine              6.0         77           2
 L leucine             7.8        101           2
 M methionine          1.1         14           1
 N asparagine          2.6         34           1
 P proline            10.4        134           4
 Q glutamine           4.6         59           2
 R arginine            6.5         84           3
 S serine             13.0        168           3
 T threonine           5.9         76           2
 V valine              4.4         57           2
 W tryptophan          0.9         12           1
 Y tyrosine            2.9         37           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorbin and SH3 domain containing 1 isoform 3 
SORBS1                0.713   sorbin and SH3 domain containing 1 isoform 4 
SORBS1                0.549   sorbin and SH3 domain containing 1 isoform 5 
SORBS1                0.511   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.388   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.387   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.331   sorbin and SH3 domain containing 1 isoform 1 
SORBS2                0.122   sorbin and SH3 domain containing 2 isoform 1 
SORBS2                0.100   sorbin and SH3 domain containing 2 isoform 5 
SORBS2                0.098   sorbin and SH3 domain containing 2 isoform 4 
SORBS2                0.098   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.083   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.083   sorbin and SH3 domain containing 2 isoform 3 
SORBS2                0.068   sorbin and SH3 domain containing 2 isoform 7 
SORBS2                0.068   sorbin and SH3 domain containing 2 isoform 2 
SORBS3                0.067   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.067   sorbin and SH3 domain containing 3 isoform 2 
SH3RF3                0.024   SH3 domain containing ring finger 3 
SH3RF1                0.024   SH3 domain containing ring finger 1 
SH3D19                0.023   SH3 domain containing 19 isoform c 
SH3D19                0.023   SH3 domain containing 19 isoform b 
SH3D19                0.023   SH3 domain containing 19 isoform a 
SH3RF2                0.021   SH3 domain containing ring finger 2 
C1orf113              0.019   SH3 domain-containing protein C1orf113 isoform 1 [H...
DNMBP                 0.017   dynamin binding protein 
ITSN2                 0.016   intersectin 2 isoform 3 
ITSN2                 0.016   intersectin 2 isoform 1 
ITSN2                 0.016   intersectin 2 isoform 2 
ITSN1                 0.016   intersectin 1 isoform ITSN-s 
ITSN1                 0.016   intersectin 1 isoform ITSN-l 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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