Guide to the Human Genome
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Name: LOC100292614 Sequence: fasta or formatted (207aa) NCBI GI: 239752704
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         19           2
 C cysteine            3.4          7           1
 D aspartate           4.3          9           2
 E glutamate           6.3         13           5
 F phenylalanine       1.4          3           1
 G glycine             9.2         19           2
 H histidine           4.3          9           1
 I isoleucine          1.4          3           1
 K lysine              2.4          5           1
 L leucine             8.2         17           1
 M methionine          2.4          5           1
 N asparagine          0.5          1           1
 P proline             7.7         16           2
 Q glutamine           2.4          5           1
 R arginine            8.2         17           2
 S serine             13.5         28           2
 T threonine           5.8         12           1
 V valine              4.3          9           1
 W tryptophan          3.4          7           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287973          1.000   PREDICTED: hypothetical protein 
LOC100287973          1.000   PREDICTED: hypothetical protein XP_002342075 
RUSC2                 0.027   RUN and SH3 domain containing 2 
RUSC2                 0.027   RUN and SH3 domain containing 2 
SPEN                  0.019   spen homolog, transcriptional regulator 
ATXN7                 0.017   ataxin 7 isoform b 
ATXN7                 0.017   ataxin 7 isoform a 
TMEM191B              0.017   PREDICTED: hypothetical protein isoform 2 
SFRS16                0.017   splicing factor, arginine/serine-rich 16 
ZBTB4                 0.015   zinc finger and BTB domain containing 4 
ZBTB4                 0.015   zinc finger and BTB domain containing 4 
C9orf86               0.012   Rab-like GTP-binding protein 1 isoform 2 
LOC100293501          0.012   PREDICTED: hypothetical protein 
LOC100291178          0.012   PREDICTED: hypothetical protein XP_002347544 
LOC100289466          0.012   PREDICTED: hypothetical protein XP_002342181 
LOC100292444          0.012   PREDICTED: similar to hCG2018832 
LOC100293486          0.012   PREDICTED: similar to hCG2041452 
LOC100291379          0.012   PREDICTED: hypothetical protein XP_002346556 
LOC100288960          0.012   PREDICTED: hypothetical protein XP_002342392 
FLJ10404              0.012   hypothetical protein LOC54540 
ZRANB2                0.012   zinc finger protein 265 isoform 1 
ZRANB2                0.012   zinc finger protein 265 isoform 2 
TMEM181               0.012   G protein-coupled receptor 178 
MUC16                 0.010   mucin 16 
LOC100293412          0.010   PREDICTED: hypothetical protein 
LOC100290067          0.010   PREDICTED: hypothetical protein XP_002347479 
LOC100289251          0.010   PREDICTED: hypothetical protein XP_002343312 
TRA2A                 0.010   transformer-2 alpha 
FAM110A               0.010   hypothetical protein LOC83541 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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