Guide to the Human Genome
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Name: IER5 Sequence: fasta or formatted (327aa) NCBI GI: 142976757
Description:

immediate early response 5

Referenced in:

Additional Signal Responses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         42           3
 C cysteine            3.4         11           3
 D aspartate           3.7         12           3
 E glutamate           9.2         30           4
 F phenylalanine       1.8          6           1
 G glycine            12.5         41           3
 H histidine           0.6          2           1
 I isoleucine          2.4          8           1
 K lysine              2.8          9           2
 L leucine             5.2         17           2
 M methionine          0.9          3           1
 N asparagine          1.8          6           1
 P proline            14.4         47           4
 Q glutamine           3.4         11           3
 R arginine            6.7         22           2
 S serine              6.4         21           2
 T threonine           3.4         11           1
 V valine              6.1         20           1
 W tryptophan          1.5          5           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immediate early response 5 
IER5L                 0.100   immediate early response 5-like 
IER2                  0.088   immediate early response 2 
SFPQ                  0.050   splicing factor proline/glutamine rich (polypyrimidin...
COL1A1                0.048   alpha 1 type I collagen preproprotein 
NACA                  0.048   nascent polypeptide-associated complex alpha subuni...
C2orf55               0.045   hypothetical protein LOC343990 
FLJ22184              0.044   PREDICTED: hypothetical protein LOC80164 
CASKIN1               0.044   CASK interacting protein 1 
UNCX                  0.041   UNC homeobox 
PRB1                  0.039   proline-rich protein BstNI subfamily 1 isoform 1 pre...
BAT2                  0.039   HLA-B associated transcript-2 
PRR12                 0.036   proline rich 12 
TAF4                  0.036   TBP-associated factor 4 
GRIN2D                0.035   N-methyl-D-aspartate receptor subunit 2D precursor ...
BASP1                 0.035   brain abundant, membrane attached signal protein 1 [...
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 
ANKRD11               0.035   ankyrin repeat domain 11 
MED15                 0.035   mediator complex subunit 15 isoform a 
MED15                 0.035   mediator complex subunit 15 isoform b 
SYN1                  0.033   synapsin I isoform Ia 
SYN1                  0.033   synapsin I isoform Ib 
CABLES1               0.033   Cdk5 and Abl enzyme substrate 1 isoform 2 
CASKIN2               0.033   cask-interacting protein 2 isoform b 
CASKIN2               0.033   cask-interacting protein 2 isoform a 
PRB2                  0.033   proline-rich protein BstNI subfamily 2 
SF1                   0.032   splicing factor 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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