Guide to the Human Genome
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Name: THAP8 Sequence: fasta or formatted (274aa) NCBI GI: 22749337
Description:

THAP domain containing 8

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         25           1
 C cysteine            2.9          8           1
 D aspartate           2.6          7           1
 E glutamate           3.6         10           2
 F phenylalanine       2.2          6           1
 G glycine             6.2         17           2
 H histidine           2.6          7           1
 I isoleucine          2.2          6           2
 K lysine              2.9          8           1
 L leucine            10.6         29           2
 M methionine          1.5          4           1
 N asparagine          1.5          4           1
 P proline            13.1         36           4
 Q glutamine           8.8         24           2
 R arginine            9.1         25           2
 S serine              6.6         18           1
 T threonine           6.6         18           2
 V valine              5.5         15           2
 W tryptophan          1.5          4           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   THAP domain containing 8 
THAP5                 0.143   THAP domain containing 5 isoform 1 
THAP4                 0.096   THAP domain containing 4 
THAP1                 0.077   THAP domain containing, apoptosis associated protein ...
THAP3                 0.074   THAP domain containing, apoptosis associated protein...
THAP2                 0.068   THAP domain containing, apoptosis associated protein...
THAP5                 0.068   THAP domain containing 5 isoform 2 
THAP7                 0.066   THAP domain containing 7 isoform 2 
THAP7                 0.066   THAP domain containing 7 isoform 1 
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.033   SWI/SNF-related matrix-associated actin-dependent re...
RAPH1                 0.031   Ras association and pleckstrin homology domains 1 is...
PRKRIR                0.031   protein-kinase, interferon-inducible double stranded...
AMOT                  0.031   angiomotin isoform 2 
AMOT                  0.031   angiomotin isoform 1 
THAP9                 0.029   THAP domain containing 9 
MAP7D1                0.029   MAP7 domain containing 1 
TBKBP1                0.028   TBK1 binding protein 1 
SYN1                  0.028   synapsin I isoform Ia 
SYN1                  0.028   synapsin I isoform Ib 
BCORL1                0.028   BCL6 co-repressor-like 1 
CDKN1C                0.026   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.026   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.026   cyclin-dependent kinase inhibitor 1C isoform a 
NCOA6                 0.026   nuclear receptor coactivator 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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