Guide to the Human Genome
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Name: LOC100292057 Sequence: fasta or formatted (233aa) NCBI GI: 239753916
Description:

PREDICTED: hypothetical protein XP_002345830

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.0         35           3
 C cysteine            0.9          2           1
 D aspartate           0.9          2           1
 E glutamate           3.9          9           1
 F phenylalanine       2.1          5           1
 G glycine            11.6         27           2
 H histidine           0.9          2           1
 I isoleucine          0.4          1           1
 K lysine              3.4          8           1
 L leucine             5.2         12           2
 M methionine          0.4          1           1
 N asparagine          1.3          3           1
 P proline            12.9         30           3
 Q glutamine           2.1          5           1
 R arginine           15.9         37           3
 S serine              6.0         14           1
 T threonine           3.9          9           2
 V valine              4.7         11           1
 W tryptophan          3.0          7           1
 X unknown             5.6         13          13
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345830 
LOC100287121          0.634   PREDICTED: hypothetical protein 
LOC100287121          0.634   PREDICTED: hypothetical protein XP_002342511 
SRRM1                 0.049   serine/arginine repetitive matrix 1 
LOC100293254          0.044   PREDICTED: hypothetical protein 
LOC100289377          0.044   PREDICTED: hypothetical protein 
LOC100289377          0.044   PREDICTED: hypothetical protein XP_002343119 
FLJ37078              0.040   hypothetical protein LOC222183 
LOC100291828          0.035   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.035   PREDICTED: hypothetical protein XP_002343509 
LOC100289408          0.035   PREDICTED: hypothetical protein 
LOC100289408          0.035   PREDICTED: hypothetical protein XP_002344217 
C6orf132              0.033   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.033   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.033   PREDICTED: hypothetical protein LOC647024 
RBM15B                0.033   RNA binding motif protein 15B 
LOC100287063          0.030   PREDICTED: hypothetical protein 
LOC100290093          0.028   PREDICTED: hypothetical protein XP_002346542 
SCARA3                0.028   scavenger receptor class A, member 3 isoform 1 [Homo...
H1FNT                 0.028   H1 histone family, member N, testis-specific 
SAMD1                 0.028   sterile alpha motif domain containing 1 
LOC100287063          0.026   PREDICTED: hypothetical protein XP_002342368 
LOC100292122          0.026   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.026   PREDICTED: hypothetical protein XP_002344191 
DACT3                 0.026   thymus expressed gene 3-like 
LOC100131225          0.023   PREDICTED: hypothetical protein 
LOC100293578          0.023   PREDICTED: hypothetical protein 
LOC645321             0.023   PREDICTED: hypothetical protein 
LOC100131225          0.023   PREDICTED: hypothetical protein 
LOC100290886          0.023   PREDICTED: hypothetical protein XP_002346949 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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