Guide to the Human Genome
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Name: LOC100292444 Sequence: fasta or formatted (212aa) NCBI GI: 239755593
Description:

PREDICTED: similar to hCG2018832

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         22           2
 C cysteine            1.9          4           2
 D aspartate           4.2          9           1
 E glutamate           5.7         12           1
 F phenylalanine       3.8          8           1
 G glycine             9.9         21           2
 H histidine           1.4          3           1
 I isoleucine          1.9          4           1
 K lysine              3.3          7           2
 L leucine            11.3         24           2
 M methionine          0.9          2           1
 N asparagine          2.8          6           1
 P proline             7.1         15           3
 Q glutamine           5.7         12           2
 R arginine            9.4         20           3
 S serine              8.5         18           2
 T threonine           6.1         13           1
 V valine              1.9          4           1
 W tryptophan          2.8          6           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2018832 
ANKRD36               0.027   PREDICTED: ankyrin repeat domain 36 
TBX2                  0.024   T-box 2 
C9orf79               0.024   chromosome 9 open reading frame 79 
GUCY1A2               0.024   guanylate cyclase 1, soluble, alpha 2 
RB1                   0.022   retinoblastoma 1 
LOC100292057          0.019   PREDICTED: hypothetical protein XP_002345830 
THAP8                 0.019   THAP domain containing 8 
SORBS1                0.015   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.015   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.015   sorbin and SH3 domain containing 1 isoform 5 
SORBS1                0.015   sorbin and SH3 domain containing 1 isoform 4 
SORBS1                0.015   sorbin and SH3 domain containing 1 isoform 3 
SORBS1                0.015   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.015   sorbin and SH3 domain containing 1 isoform 1 
KIFC2                 0.015   kinesin family member C2 
ZNF281                0.015   zinc finger protein 281 
IER5                  0.015   immediate early response 5 
LOC100128267          0.015   PREDICTED: hypothetical protein, partial 
ATXN2                 0.015   ataxin 2 
KCNH3                 0.015   potassium voltage-gated channel, subfamily H (eag-re...
BCR                   0.012   breakpoint cluster region isoform 2 
BCR                   0.012   breakpoint cluster region isoform 1 
LOC100132891          0.012   PREDICTED: hypothetical protein 
LOC100132891          0.012   PREDICTED: hypothetical protein 
LOC100132891          0.012   PREDICTED: hypothetical protein 
SFMBT2                0.012   Scm-like with four mbt domains 2 
LOC100134348          0.012   PREDICTED: similar to TBC1 domain family, member 3 ...
LOC100292614          0.012   PREDICTED: hypothetical protein 
LOC100287973          0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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