Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SORBS1 Sequence: fasta or formatted (816aa) NCBI GI: 7661700
Description:

sorbin and SH3 domain containing 1 isoform 2

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [684aa] sorbin and SH3 domain containing 1 isoform 1
alt prot [1292aa] sorbin and SH3 domain containing 1 isoform 3
alt prot [1151aa] sorbin and SH3 domain containing 1 isoform 4
alt prot [905aa] sorbin and SH3 domain containing 1 isoform 5
alt prot [781aa] sorbin and SH3 domain containing 1 isoform 6
alt prot [740aa] sorbin and SH3 domain containing 1 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         48           2
 C cysteine            0.5          4           1
 D aspartate           6.9         56           3
 E glutamate           6.4         52           2
 F phenylalanine       2.7         22           1
 G glycine             5.4         44           2
 H histidine           1.5         12           2
 I isoleucine          4.0         33           1
 K lysine              6.0         49           2
 L leucine             6.9         56           2
 M methionine          1.3         11           1
 N asparagine          2.7         22           1
 P proline            10.0         82           4
 Q glutamine           4.9         40           2
 R arginine            6.4         52           3
 S serine             13.2        108           3
 T threonine           5.8         47           2
 V valine              5.3         43           2
 W tryptophan          0.9          7           1
 Y tyrosine            3.4         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.815   sorbin and SH3 domain containing 1 isoform 3 
SORBS1                0.771   sorbin and SH3 domain containing 1 isoform 5 
SORBS1                0.702   sorbin and SH3 domain containing 1 isoform 1 
SORBS1                0.680   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.679   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.549   sorbin and SH3 domain containing 1 isoform 4 
SORBS2                0.237   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.235   sorbin and SH3 domain containing 2 isoform 3 
SORBS2                0.232   sorbin and SH3 domain containing 2 isoform 1 
SORBS2                0.231   sorbin and SH3 domain containing 2 isoform 5 
SORBS2                0.217   sorbin and SH3 domain containing 2 isoform 4 
SORBS2                0.217   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.168   sorbin and SH3 domain containing 2 isoform 7 
SORBS2                0.168   sorbin and SH3 domain containing 2 isoform 2 
SORBS3                0.160   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.155   sorbin and SH3 domain containing 3 isoform 2 
SH3D19                0.056   SH3 domain containing 19 isoform a 
SH3D19                0.054   SH3 domain containing 19 isoform b 
SH3D19                0.051   SH3 domain containing 19 isoform c 
SH3KBP1               0.043   SH3-domain kinase binding protein 1 isoform a 
C1orf113              0.041   SH3 domain-containing protein C1orf113 isoform 1 [H...
SH3RF3                0.037   SH3 domain containing ring finger 3 
ITSN1                 0.036   intersectin 1 isoform ITSN-s 
ITSN1                 0.036   intersectin 1 isoform ITSN-l 
SH3RF1                0.035   SH3 domain containing ring finger 1 
GRB2                  0.035   growth factor receptor-bound protein 2 isoform 1 [Hom...
DNMBP                 0.034   dynamin binding protein 
SH3RF2                0.034   SH3 domain containing ring finger 2 
CD2AP                 0.033   CD2-associated protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press