Guide to the Human Genome
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Name: LOC100132891 Sequence: fasta or formatted (297aa) NCBI GI: 239749451
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {297aa} PREDICTED: hypothetical protein
alt mRNA {297aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         38           4
 C cysteine            3.7         11           1
 D aspartate           1.3          4           1
 E glutamate           2.7          8           1
 F phenylalanine       1.3          4           1
 G glycine            10.4         31           5
 H histidine           3.7         11           2
 I isoleucine          0.7          2           1
 K lysine              2.0          6           1
 L leucine             7.4         22           1
 M methionine          0.7          2           1
 N asparagine          0.7          2           1
 P proline            16.5         49           3
 Q glutamine           3.0          9           1
 R arginine           14.5         43           3
 S serine             10.8         32           2
 T threonine           3.0          9           1
 V valine              2.0          6           1
 W tryptophan          2.4          7           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132891          1.000   PREDICTED: hypothetical protein 
LOC100132891          1.000   PREDICTED: hypothetical protein 
SAMD1                 0.054   sterile alpha motif domain containing 1 
SRRM2                 0.052   splicing coactivator subunit SRm300 
SRRM1                 0.044   serine/arginine repetitive matrix 1 
C2orf71               0.041   hypothetical protein LOC388939 
LOC100293375          0.039   PREDICTED: hypothetical protein 
MYO15A                0.039   myosin XV 
NACA                  0.039   nascent polypeptide-associated complex alpha subuni...
LOC100291634          0.036   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.036   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.036   PREDICTED: hypothetical protein 
SHANK1                0.036   SH3 and multiple ankyrin repeat domains 1 
FAM108A4              0.036   PREDICTED: hypothetical protein 
LOC100131880          0.034   PREDICTED: hypothetical protein 
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
LOC100287524          0.033   PREDICTED: hypothetical protein XP_002342307 
DUSP8                 0.033   dual specificity phosphatase 8 
HCN4                  0.033   hyperpolarization activated cyclic nucleotide-gated p...
LOC100130128          0.033   PREDICTED: hypothetical protein 
LOC100130128          0.033   PREDICTED: hypothetical protein 
LOC100130128          0.033   PREDICTED: hypothetical protein 
LOC729506             0.031   PREDICTED: hypothetical protein 
LOC729506             0.031   PREDICTED: hypothetical protein 
LOC100130360          0.031   PREDICTED: hypothetical protein 
LOC729506             0.031   PREDICTED: hypothetical protein 
TAF4                  0.031   TBP-associated factor 4 
PRB2                  0.031   proline-rich protein BstNI subfamily 2 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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