Guide to the Human Genome
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Name: LOC100287989 Sequence: fasta or formatted (81aa) NCBI GI: 239747025
Description:

PREDICTED: hypothetical protein XP_002343908

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           11.1          9           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine             0.0          0           0
 H histidine           8.6          7           1
 I isoleucine         11.1          9           1
 K lysine              0.0          0           0
 L leucine             0.0          0           0
 M methionine          9.9          8           1
 N asparagine          0.0          0           0
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            1.2          1           1
 S serine              1.2          1           1
 T threonine           9.9          8           1
 V valine             18.5         15           1
 W tryptophan          0.0          0           0
 Y tyrosine           28.4         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343908 
LOC100291272          1.000   PREDICTED: hypothetical protein XP_002348172 
LOC100131488          0.515   PREDICTED: hypothetical protein 
LOC100133807          0.503   PREDICTED: similar to serine/threonine-protein kina...
LOC100132983          0.503   PREDICTED: hypothetical protein 
LOC100294441          0.485   PREDICTED: hypothetical protein 
LOC100131203          0.485   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.485   PREDICTED: similar to serine/threonine-protein kina...
LOC100133226          0.485   PREDICTED: hypothetical protein 
LOC100129825          0.479   PREDICTED: hypothetical protein 
LOC100291872          0.473   PREDICTED: hypothetical protein XP_002345798 
LOC100133776          0.473   PREDICTED: similar to hCG1820441 
LOC100134730          0.473   PREDICTED: hypothetical protein 
LOC100129642          0.467   PREDICTED: hypothetical protein 
LOC100288317          0.467   PREDICTED: hypothetical protein XP_002342505 
LOC100129825          0.467   PREDICTED: hypothetical protein 
LOC100132679          0.467   PREDICTED: hypothetical protein 
LOC100134447          0.467   PREDICTED: hypothetical protein 
LOC100131203          0.467   PREDICTED: hypothetical protein 
LOC100134332          0.467   PREDICTED: hypothetical protein, partial 
LOC100132016          0.467   PREDICTED: hypothetical protein 
LOC100291751          0.461   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132556          0.461   PREDICTED: hypothetical protein, partial 
LOC100134060          0.461   PREDICTED: hypothetical protein 
LOC100133844          0.461   PREDICTED: hypothetical protein 
LOC100129802          0.455   PREDICTED: hypothetical protein 
LOC100133741          0.455   PREDICTED: hypothetical protein 
LOC100134411          0.455   PREDICTED: hypothetical protein 
LOC100289649          0.455   PREDICTED: hypothetical protein XP_002342367 
LOC100134395          0.442   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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