Guide to the Human Genome
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Name: LOC100291441 Sequence: fasta or formatted (48aa) NCBI GI: 239752644
Description:

PREDICTED: hypothetical protein XP_002347571

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.1          1           1
 C cysteine           37.5         18           3
 D aspartate           0.0          0           0
 E glutamate           2.1          1           1
 F phenylalanine       0.0          0           0
 G glycine             2.1          1           1
 H histidine           0.0          0           0
 I isoleucine          6.2          3           1
 K lysine              6.2          3           1
 L leucine             2.1          1           1
 M methionine          2.1          1           1
 N asparagine          2.1          1           1
 P proline             4.2          2           1
 Q glutamine           4.2          2           1
 R arginine            2.1          1           1
 S serine             20.8         10           2
 T threonine           2.1          1           1
 V valine              2.1          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347571 
KRTAP5-1              0.656   keratin associated protein 5-1 
KRTAP5-2              0.635   keratin associated protein 5-2 
KRTAP5-8              0.625   keratin associated protein 5-8 
KRTAP5-3              0.604   keratin associated protein 5-3 
KRTAP5-6              0.604   keratin associated protein 5-6 
KRTAP5-4              0.594   keratin associated protein 5-4 
KRTAP5-7              0.573   keratin associated protein 5-7 
KRTAP5-10             0.573   keratin associated protein 5-10 
KRTAP5-9              0.521   keratin associated protein 5-9 
KRTAP5-5              0.510   keratin associated protein 5-5 
KRTAP5-11             0.510   keratin associated protein 5-11 
KRTAP4-5              0.375   keratin associated protein 4-5 
KRTAP4-1              0.365   keratin associated protein 4-1 
KRTAP4-8              0.354   PREDICTED: keratin associated protein 4-8 isoform 3...
KRTAP4-8              0.354   PREDICTED: keratin associated protein 4-8 isoform 2...
KRTAP4-8              0.354   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.354   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.354   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.354   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-9              0.344   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-9              0.344   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-8              0.344   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.344   keratin associated protein 4.8 
KRTAP4-9              0.344   keratin associated protein 4-9 
KRTAP4-3              0.344   keratin associated protein 4-3 
LOC728341             0.333   PREDICTED: keratin-associated protein 9-2-like 1-li...
KRTAP4-11             0.333   keratin associated protein 4-11 
KRTAP4-8              0.323   PREDICTED: keratin associated protein 4-8 
KRTAP9-2              0.323   keratin associated protein 9.2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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