Guide to the Human Genome
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Name: KRTAP4-8 Sequence: fasta or formatted (185aa) NCBI GI: 239745805
Description:

PREDICTED: keratin associated protein 4.8

Referenced in:

Keratins

Other entries for this name:
alt mRNA [185aa] keratin associated protein 4.8
alt prot [195aa] PREDICTED: keratin associated protein 4-8
alt prot [220aa] PREDICTED: keratin associated protein 4-8 isoform 1
alt prot [193aa] PREDICTED: keratin associated protein 4-8 isoform 2
alt prot [204aa] PREDICTED: keratin associated protein 4-8 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          2           1
 C cysteine           35.1         65           3
 D aspartate           1.1          2           1
 E glutamate           1.1          2           1
 F phenylalanine       0.0          0           0
 G glycine             2.2          4           1
 H histidine           1.1          2           1
 I isoleucine          1.6          3           1
 K lysine              1.1          2           1
 L leucine             1.1          2           1
 M methionine          0.5          1           1
 N asparagine          1.1          2           1
 P proline             9.7         18           1
 Q glutamine           7.0         13           1
 R arginine            6.5         12           1
 S serine             16.2         30           2
 T threonine           5.4         10           2
 V valine              6.5         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              1.000   keratin associated protein 4.8 
KRTAP4-8              0.966   PREDICTED: keratin associated protein 4-8 
KRTAP4-8              0.957   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.957   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.934   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.934   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.929   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.929   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-11             0.884   keratin associated protein 4-11 
KRTAP4-9              0.881   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-9              0.879   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.877   keratin associated protein 4-9 
KRTAP4-12             0.824   keratin associated protein 4-12 
KRTAP4-5              0.767   keratin associated protein 4-5 
KRTAP4-7              0.658   keratin associated protein 4-7 
KRTAP4-7              0.658   PREDICTED: keratin associated protein 4-7 
KRTAP4-3              0.651   keratin associated protein 4-3 
KRTAP4-4              0.632   keratin associated protein 4.4 
KRTAP4-2              0.473   keratin associated protein 4-2 
LOC728318             0.429   PREDICTED: hypothetical protein 
LOC728318             0.429   PREDICTED: hypothetical protein 
LOC728318             0.427   PREDICTED: hypothetical protein 
KRTAP4-1              0.418   keratin associated protein 4-1 
KRTAP9-2              0.400   keratin associated protein 9.2 
LOC728341             0.397   PREDICTED: keratin-associated protein 9-2-like 1-li...
KRTAP9-3              0.381   keratin associated protein 9.3 
KRTAP9-4              0.374   keratin associated protein 9-4 
KRTAP10-7             0.370   keratin associated protein 10-7 
KRTAP10-11            0.368   keratin associated protein 10-11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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