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Search of human proteins with 239749293
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
(585 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 1224 0.0
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 1224 0.0
gi|239754761 PREDICTED: hypothetical protein [Homo sapiens] 122 7e-28
gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo ... 122 7e-28
gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo ... 122 7e-28
gi|239509073 PREDICTED: hypothetical protein [Homo sapiens] 122 7e-28
gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo ... 118 2e-26
gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo ... 118 2e-26
gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo ... 118 2e-26
gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo ... 118 2e-26
gi|110832843 TBP-associated factor 4 [Homo sapiens] 59 1e-08
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 57 6e-08
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 56 8e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens] 55 1e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 55 2e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 54 5e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 54 5e-07
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 53 9e-07
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 52 1e-06
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 52 1e-06
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 52 1e-06
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 52 2e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 52 2e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 52 2e-06
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 51 3e-06
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 50 6e-06
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 50 6e-06
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 50 6e-06
gi|33286446 opioid growth factor receptor [Homo sapiens] 49 1e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 49 2e-05
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 1224 bits (3167), Expect = 0.0
Identities = 585/585 (100%), Positives = 585/585 (100%)
Query: 1 MDSSAEHPSKLTIPDPRGISVLAYTLINRRNNLILACPSNWDHCIFSFINHPFLSYYTTF 60
MDSSAEHPSKLTIPDPRGISVLAYTLINRRNNLILACPSNWDHCIFSFINHPFLSYYTTF
Sbjct: 1 MDSSAEHPSKLTIPDPRGISVLAYTLINRRNNLILACPSNWDHCIFSFINHPFLSYYTTF 60
Query: 61 LNHTPIQITSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRV 120
LNHTPIQITSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRV
Sbjct: 61 LNHTPIQITSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRV 120
Query: 121 PNTTHLLSRWFANSTAVFSQSAIFFSFVPVLPSRKRSGKGCPFGKPGSGAAGPCQSRELL 180
PNTTHLLSRWFANSTAVFSQSAIFFSFVPVLPSRKRSGKGCPFGKPGSGAAGPCQSRELL
Sbjct: 121 PNTTHLLSRWFANSTAVFSQSAIFFSFVPVLPSRKRSGKGCPFGKPGSGAAGPCQSRELL 180
Query: 181 GKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQ 240
GKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQ
Sbjct: 181 GKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQ 240
Query: 241 NTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQ 300
NTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQ
Sbjct: 241 NTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQ 300
Query: 301 GPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ 360
GPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ
Sbjct: 301 GPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ 360
Query: 361 EPGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEA 420
EPGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEA
Sbjct: 361 EPGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEA 420
Query: 421 RRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGS 480
RRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGS
Sbjct: 421 RRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGS 480
Query: 481 SPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVPFQN 540
SPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVPFQN
Sbjct: 481 SPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVPFQN 540
Query: 541 LRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGLCFQGEPGGWVLL 585
LRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGLCFQGEPGGWVLL
Sbjct: 541 LRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGLCFQGEPGGWVLL 585
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 1224 bits (3167), Expect = 0.0
Identities = 585/585 (100%), Positives = 585/585 (100%)
Query: 1 MDSSAEHPSKLTIPDPRGISVLAYTLINRRNNLILACPSNWDHCIFSFINHPFLSYYTTF 60
MDSSAEHPSKLTIPDPRGISVLAYTLINRRNNLILACPSNWDHCIFSFINHPFLSYYTTF
Sbjct: 1 MDSSAEHPSKLTIPDPRGISVLAYTLINRRNNLILACPSNWDHCIFSFINHPFLSYYTTF 60
Query: 61 LNHTPIQITSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRV 120
LNHTPIQITSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRV
Sbjct: 61 LNHTPIQITSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRV 120
Query: 121 PNTTHLLSRWFANSTAVFSQSAIFFSFVPVLPSRKRSGKGCPFGKPGSGAAGPCQSRELL 180
PNTTHLLSRWFANSTAVFSQSAIFFSFVPVLPSRKRSGKGCPFGKPGSGAAGPCQSRELL
Sbjct: 121 PNTTHLLSRWFANSTAVFSQSAIFFSFVPVLPSRKRSGKGCPFGKPGSGAAGPCQSRELL 180
Query: 181 GKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQ 240
GKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQ
Sbjct: 181 GKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQ 240
Query: 241 NTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQ 300
NTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQ
Sbjct: 241 NTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQ 300
Query: 301 GPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ 360
GPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ
Sbjct: 301 GPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ 360
Query: 361 EPGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEA 420
EPGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEA
Sbjct: 361 EPGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEA 420
Query: 421 RRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGS 480
RRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGS
Sbjct: 421 RRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGS 480
Query: 481 SPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVPFQN 540
SPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVPFQN
Sbjct: 481 SPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVPFQN 540
Query: 541 LRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGLCFQGEPGGWVLL 585
LRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGLCFQGEPGGWVLL
Sbjct: 541 LRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGLCFQGEPGGWVLL 585
>gi|239754761 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 122 bits (307), Expect = 7e-28
Identities = 62/86 (72%), Positives = 68/86 (79%)
Query: 69 TSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLS 128
+S +P TLG SPLLPGGSR+IQKFL S+FS FSSRLCSSPYSCS+VP+T HL S
Sbjct: 54 SSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPS 113
Query: 129 RWFANSTAVFSQSAIFFSFVPVLPSR 154
WF NSTAVFSQSA FFS VPV PSR
Sbjct: 114 SWFPNSTAVFSQSASFFSAVPVRPSR 139
>gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo
sapiens]
Length = 154
Score = 122 bits (307), Expect = 7e-28
Identities = 62/86 (72%), Positives = 68/86 (79%)
Query: 69 TSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLS 128
+S +P TLG SPLLPGGSR+IQKFL S+FS FSSRLCSSPYSCS+VP+T HL S
Sbjct: 54 SSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPS 113
Query: 129 RWFANSTAVFSQSAIFFSFVPVLPSR 154
WF NSTAVFSQSA FFS VPV PSR
Sbjct: 114 SWFPNSTAVFSQSASFFSAVPVRPSR 139
>gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo
sapiens]
Length = 154
Score = 122 bits (307), Expect = 7e-28
Identities = 62/86 (72%), Positives = 68/86 (79%)
Query: 69 TSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLS 128
+S +P TLG SPLLPGGSR+IQKFL S+FS FSSRLCSSPYSCS+VP+T HL S
Sbjct: 54 SSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPS 113
Query: 129 RWFANSTAVFSQSAIFFSFVPVLPSR 154
WF NSTAVFSQSA FFS VPV PSR
Sbjct: 114 SWFPNSTAVFSQSASFFSAVPVRPSR 139
>gi|239509073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 122 bits (307), Expect = 7e-28
Identities = 62/86 (72%), Positives = 68/86 (79%)
Query: 69 TSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLS 128
+S +P TLG SPLLPGGSR+IQKFL S+FS FSSRLCSSPYSCS+VP+T HL S
Sbjct: 54 SSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPS 113
Query: 129 RWFANSTAVFSQSAIFFSFVPVLPSR 154
WF NSTAVFSQSA FFS VPV PSR
Sbjct: 114 SWFPNSTAVFSQSASFFSAVPVRPSR 139
>gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 118 bits (295), Expect = 2e-26
Identities = 59/79 (74%), Positives = 63/79 (79%)
Query: 79 LTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLSRWFANSTAVF 138
+T G SPL+PGGSRRIQKFL SRFS FSSRLCSSPYSCSRVP+T HL S WF +S VF
Sbjct: 212 ITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTVF 271
Query: 139 SQSAIFFSFVPVLPSRKRS 157
SQ A FFS VPV PSR RS
Sbjct: 272 SQLASFFSAVPVRPSRCRS 290
>gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo
sapiens]
Length = 348
Score = 118 bits (295), Expect = 2e-26
Identities = 59/79 (74%), Positives = 63/79 (79%)
Query: 79 LTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLSRWFANSTAVF 138
+T G SPL+PGGSRRIQKFL SRFS FSSRLCSSPYSCSRVP+T HL S WF +S VF
Sbjct: 212 ITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTVF 271
Query: 139 SQSAIFFSFVPVLPSRKRS 157
SQ A FFS VPV PSR RS
Sbjct: 272 SQLASFFSAVPVRPSRCRS 290
>gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo
sapiens]
Length = 348
Score = 118 bits (295), Expect = 2e-26
Identities = 59/79 (74%), Positives = 63/79 (79%)
Query: 79 LTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLSRWFANSTAVF 138
+T G SPL+PGGSRRIQKFL SRFS FSSRLCSSPYSCSRVP+T HL S WF +S VF
Sbjct: 212 ITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTVF 271
Query: 139 SQSAIFFSFVPVLPSRKRS 157
SQ A FFS VPV PSR RS
Sbjct: 272 SQLASFFSAVPVRPSRCRS 290
>gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 118 bits (295), Expect = 2e-26
Identities = 59/79 (74%), Positives = 63/79 (79%)
Query: 79 LTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLSRWFANSTAVF 138
+T G SPL+PGGSRRIQKFL SRFS FSSRLCSSPYSCSRVP+T HL S WF +S VF
Sbjct: 212 ITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTVF 271
Query: 139 SQSAIFFSFVPVLPSRKRS 157
SQ A FFS VPV PSR RS
Sbjct: 272 SQLASFFSAVPVRPSRCRS 290
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 58.9 bits (141), Expect = 1e-08
Identities = 62/232 (26%), Positives = 76/232 (32%), Gaps = 45/232 (19%)
Query: 322 SPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGP-PRPWPCALRPR----- 375
+P PAA V+ P+P +P GP A AR P PGP P P P +P
Sbjct: 138 APVPAAAAVAAGPEPAPAGPAKPAGPAAL--AARAGPGPGPGPGPGPGPGPGKPAGPGAA 195
Query: 376 ----------PRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLP 425
AA P+ L + G A LP PG + PF + P
Sbjct: 196 QTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAP 255
Query: 426 EPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQA 485
P P P PP P TL PP H P A
Sbjct: 256 SP--------------------PAAPAPAAPAAAPPPPPPAPATLARPP-GHPAGPPTAA 294
Query: 486 PS--GEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGV 535
P+ A + GG A A +P G G+ G P + P PGV
Sbjct: 295 PAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQ----PGPGAAAAAPAPGV 342
Score = 38.9 bits (89), Expect = 0.013
Identities = 54/183 (29%), Positives = 58/183 (31%), Gaps = 58/183 (31%)
Query: 321 GSPCPAAEPVSQAGPPSPGHAGRPRGPEA-----ARPCARGPPSQEPGPPRPWPCALRPR 375
GSP AA AGP +P PE ARP GP Q PGPP
Sbjct: 65 GSPAGAAG----AGPAAPAEGAPGAAPEPPPAGRARPGGGGP--QRPGPPS--------- 109
Query: 376 PRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPV 435
P R L G A P KL P PE PV
Sbjct: 110 -------PRRPLVPAGPA---PPAAKLRPP-------------------PEGSAGSCAPV 140
Query: 436 GANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAG 495
A + A PEP PA A+P GP L G P P G+ AG
Sbjct: 141 PAAAAVAAG------PEPAPA---GPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAG 191
Query: 496 GGA 498
GA
Sbjct: 192 PGA 194
Score = 33.9 bits (76), Expect = 0.43
Identities = 50/207 (24%), Positives = 67/207 (32%), Gaps = 34/207 (16%)
Query: 322 SPCPAAEPVSQAGPPSPGHA------GRPRGPEAARPC---------------------A 354
+P PAA P + PP P A G P GP A P A
Sbjct: 260 APAPAA-PAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPA 318
Query: 355 RGPPSQEPGPPRPWPCALRPRPRLRAALPSRRL-FSRGAAQQLPCCYKLHPGRHVPLRPF 413
G P+ G P P A P P ++A P R + + AAQ L + + P
Sbjct: 319 AGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPT 378
Query: 414 KEKHSEARRRLPEP---RQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTL 470
+ + +P P L A +V ++ R T G R P L
Sbjct: 379 MQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSG--IRATLTPTVLAPRL 436
Query: 471 QDPPASHLGSSPAQAPSGEAGRRAGGG 497
PP + Q P G R+ G
Sbjct: 437 PQPPQNPTNIQNFQLPPGMVLVRSENG 463
Score = 30.8 bits (68), Expect = 3.6
Identities = 45/176 (25%), Positives = 60/176 (34%), Gaps = 14/176 (7%)
Query: 317 VMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRP 376
V + P PAA A P+ A P P A AR PP GPP P A+ P
Sbjct: 244 VGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLAR-PPGHPAGPPTAAP-AVPPPA 301
Query: 377 RLRAALPSRRLFSRGAAQQLPCCYKLHPG-RHVPLRPFKEKHSEARRRLPEPRQLHLQPV 435
+ + + A P PG P +E+ +R+ + Q +
Sbjct: 302 AAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTL 361
Query: 436 GANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAG 491
A+ A GP +GA P P PPA +P P G AG
Sbjct: 362 AASGPASTAASMVI----GPTMQGALPSPAAVP----PPAP---GTPTGLPKGAAG 406
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 56.6 bits (135), Expect = 6e-08
Identities = 106/394 (26%), Positives = 131/394 (33%), Gaps = 79/394 (20%)
Query: 149 PVLPSRKRSGKGCPFGKPG-SGAAGPCQSRELLGK-GSGGLSQELQG-------SERGLP 199
P P+ +R +G P G PG G GP GK G G+ +L ERG P
Sbjct: 624 PAGPAGERGEQG-PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFP 682
Query: 200 GGGG-------SGREGRLLVQQQLGV--DTGS--LPGKPGGPGEKSLAQKRQNTGVRVPS 248
G G +G G G D G+ PG G PG + + +R G+ P
Sbjct: 683 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPK 742
Query: 249 GAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGV-----QQGPD 303
G +G K K G L G IG G + GP
Sbjct: 743 GDRGDAGPKGADGSPGKDGVRGLTGP---------------IGPPGPAGAPGDKGESGPS 787
Query: 304 VRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ--- 360
G T G+P EP GPP P P G + +P A+G P
Sbjct: 788 GPA------GPTGAR--GAPGDRGEP----GPPGPAGFAGPPGADG-QPGAKGEPGDAGA 834
Query: 361 --EPGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHS 418
+ GPP P A P P P + +RG+A P PG
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGAK-GARGSAG--PPGATGFPGA------------ 879
Query: 419 EARRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHL 478
A R P + P G + R E GPA R PPGPP PA
Sbjct: 880 -AGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP----GPAGEK 934
Query: 479 GSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG 512
GS A P+G G G G R + G G
Sbjct: 935 GSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRG 968
Score = 49.3 bits (116), Expect = 1e-05
Identities = 115/435 (26%), Positives = 143/435 (32%), Gaps = 53/435 (12%)
Query: 164 GKPG-SGAAGPCQSRELLG----KGSGGLSQELQGSERGLPGGGG-SGREGRLLVQQQLG 217
G PG +GAAGP + G KG+ G + + G+ G PG G SG +G
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKGANG-APGIAGAP-GFPGARGPSGPQG--------- 422
Query: 218 VDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWE 277
G PG G GE + +TG + G G A E K GA GE
Sbjct: 423 --PGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR---GEPGP 477
Query: 278 TKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPS 337
T E G G+ G + E GSP A P P +
Sbjct: 478 TGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537
Query: 338 PGHAGRPRGPEA-ARPCARGPPSQE--PGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQ 394
G G P P + GP Q+ PGPP P P R +A + A +
Sbjct: 538 KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGP------PGARGQAGVMGFPGPKGAAGE 591
Query: 395 QLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEPG 454
+ PG + P + + P P P G + A + PG
Sbjct: 592 PGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG----PAGERGEQGPAGSPGFQGLPG 647
Query: 455 PARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG-- 512
PA A PG Q P G A PSG G R G G + P G G
Sbjct: 648 PAGPPGEAGKPGE---QGVP----GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGAN 700
Query: 513 GLIGSDSL-----PPADPLRLSHPEPGVVPFQNLRSQRDLRNPSHQRKPGVHVTSSVQPG 567
G G+D P P S PG+ R L P R + PG
Sbjct: 701 GAPGNDGAKGDAGAPGAP--GSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPG 758
Query: 568 FQG-RGLCFQ-GEPG 580
G RGL G PG
Sbjct: 759 KDGVRGLTGPIGPPG 773
Score = 48.1 bits (113), Expect = 2e-05
Identities = 118/438 (26%), Positives = 142/438 (32%), Gaps = 83/438 (18%)
Query: 157 SGKGCPFGKPGS-GAAGPCQSRELLGK-GSGGLSQELQGSERGLPGGGGS-GREGRLLVQ 213
+G P G+ GS G AGP S G+ G GL +GL G GS G +G+
Sbjct: 502 AGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLP-----GAKGLTGSPGSPGPDGKTGPP 556
Query: 214 QQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDG 273
G D PG PG PG + A G + +G +G++ + G DG
Sbjct: 557 GPAGQD--GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 614
Query: 274 EWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMS---VGSPCPAAEPV 330
E G Q P E S G P PA P
Sbjct: 615 E---------------------AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP- 652
Query: 331 SQAGPPS----PGHAGRPRGPEAARPCARGPPSQE--PGPPRPWPCALRPRPRLRAALPS 384
+AG P PG G P GP AR RG P + GPP P PR P
Sbjct: 653 GEAGKPGEQGVPGDLGAP-GPSGARG-ERGFPGERGVQGPPGP------AGPRGANGAPG 704
Query: 385 RRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGAN-SVERA 443
A + PG L+ + A P+ + P GA+ S +
Sbjct: 705 NDGAKGDAGAPGAPGSQGAPG----LQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD 760
Query: 444 ARRRRTRP--EPGPA----------------RRGARAEP-----PGPPTLQDPPASHLGS 480
R T P PGPA GAR P PGPP PA G
Sbjct: 761 GVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPP----GPAGFAGP 816
Query: 481 SPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG--GLIGSDSLPPADPLRLSHPEPGVVPF 538
A G G GA G P G G G IG+ P A R S PG F
Sbjct: 817 PGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGF 876
Query: 539 QNLRSQRDLRNPSHQRKP 556
+ PS P
Sbjct: 877 PGAAGRVGPPGPSGNAGP 894
Score = 43.5 bits (101), Expect = 5e-04
Identities = 103/379 (27%), Positives = 128/379 (33%), Gaps = 61/379 (16%)
Query: 158 GKGCPFGKPGS----GAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGGS-GREGRLLV 212
G+ P G PG GA GP +R G +G G PG G+ G +G
Sbjct: 299 GQMGPRGLPGERGRPGAPGPAGARGNDG-ATGAAGPPGPTGPAGPPGFPGAVGAKGEAGP 357
Query: 213 QQQLGVD-TGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSL 271
Q G + + G+PG PG A N G GA A+G +A GA
Sbjct: 358 QGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA------GAPGF 411
Query: 272 DGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTT-EVMSVGSPCPAAEPV 330
G RG G GP G+ + + G P PV
Sbjct: 412 PG-------------ARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEP----GPV 454
Query: 331 SQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPP-RPWPCALRPRPRLRAALPSRRLFS 389
GPP P RG ARG EPGP P P R P R + +
Sbjct: 455 GVQGPPGPAGEEGKRG-------ARG----EPGPTGLPGPPGERGGPGSRGFPGADGV-- 501
Query: 390 RGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRT 449
A + P + PG P E LP + L P G+ + +T
Sbjct: 502 --AGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP-GSPGPD-----GKT 553
Query: 450 RPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLG 509
P PGPA + R PPGPP + G P G AG G G P +G
Sbjct: 554 GP-PGPAGQDGRPGPPGPPGAR----GQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVG 608
Query: 510 SGG--GLIGSDSLP-PADP 525
G G G+ P PA P
Sbjct: 609 PAGKDGEAGAQGPPGPAGP 627
Score = 43.5 bits (101), Expect = 5e-04
Identities = 111/433 (25%), Positives = 133/433 (30%), Gaps = 79/433 (18%)
Query: 162 PFGKPGS-------GAAGPCQSRELLGK-GSGGLSQELQGSERGLPGGGGSGREGRLLVQ 213
P GK G G AGP R G GS G +GLPG G E +
Sbjct: 609 PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF--------QGLPGPAGPPGEAGKPGE 660
Query: 214 QQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDG 273
Q + D G+ PG G GE+ +R G P+G A+G GA G
Sbjct: 661 QGVPGDLGA-PGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPG 719
Query: 274 EWWETKKEFLWEEERGIGTEFLGGVQ-----QGPDVRFLLVEHWGTTEVMSVGSPCPAAE 328
+ + E G G + +G D G+ V
Sbjct: 720 SQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGAD---------GSPGKDGVRGLTGPIG 770
Query: 329 PVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ--EPGPPRPWPCALRPRPRLRAALPSRR 386
P AG P P GP A ARG P EPGPP P A P +
Sbjct: 771 PPGPAGAPGDKGESGPSGP-AGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEP 829
Query: 387 LFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARR 446
+ P PG P P P P + VGA + A
Sbjct: 830 GDAGAKGDAGP------PGPAGPAGP------------PGP----IGNVGAPGAKGARGS 867
Query: 447 RRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGD 506
G R PPGP PP P G AG+ G G G P
Sbjct: 868 AGPPGATGFPGAAGRVGPPGPSGNAGPPG----------PPGPAGKEGGKGPRGETGPAG 917
Query: 507 VLGSGG-----GLIGSDSLPPADPLRLSHPEPGVVPFQNLRSQRDLRNPSHQRK----PG 557
G G G G P AD PG Q + QR + QR PG
Sbjct: 918 RPGEVGPPGPPGPAGEKGSPGADG---PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPG 974
Query: 558 VHVTSSVQPGFQG 570
+ S +PG QG
Sbjct: 975 LPGPSG-EPGKQG 986
Score = 41.2 bits (95), Expect = 0.003
Identities = 114/415 (27%), Positives = 135/415 (32%), Gaps = 112/415 (26%)
Query: 162 PFGKPGS-GAAGPCQSRELLGK-GSGGLSQEL--------------QGSERGLPGGGG-S 204
P G+PG GA+GP R G G G E QG+ RGLPG G
Sbjct: 204 PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGA-RGLPGTAGLP 262
Query: 205 GREGRLLVQQQLGVDTGSLP----GKPGGPGE---------KSLAQKRQNTGVRVPSGAH 251
G +G G + P G+PG PGE + L +R G P+GA
Sbjct: 263 GMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Query: 252 VASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEH 311
G A G G +G + G QGP
Sbjct: 323 GNDGATGAAGPPGPTGPAGPPGF------------PGAVGAKGEAG-PQGPRG------- 362
Query: 312 WGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCA 371
S G EP GPP P A P G P A G P + P
Sbjct: 363 -------SEGPQGVRGEP----GPPGPAGAAGPAG----NPGADGQPGAKGANGAPGIAG 407
Query: 372 LRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLH 431
P R PS G P K + G P P + + A+ EP
Sbjct: 408 APGFPGARG--PSGPQGPGG-----PPGPKGNSGE--PGAPGSKGDTGAK---GEP---- 451
Query: 432 LQPVGANSVERAARRRRTRPEPGPA----RRGARAEP-----PGPPTLQDPPASH--LGS 480
PVG PGPA +RGAR EP PGPP + P S G+
Sbjct: 452 -GPVGVQG------------PPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGA 498
Query: 481 SPAQAPSGEAGRRAGGGAVGAR-SPGDVLGSGGGLIGSDSLPPADPLRLSHPEPG 534
P G AG R G G + SPG+ G G LP A L S PG
Sbjct: 499 DGVAGPKGPAGERGSPGPAGPKGSPGE-----AGRPGEAGLPGAKGLTGSPGSPG 548
Score = 41.2 bits (95), Expect = 0.003
Identities = 94/380 (24%), Positives = 121/380 (31%), Gaps = 74/380 (19%)
Query: 149 PVLPSRKRSGKGCPFGKPGSGAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGG-SGRE 207
P P G P K G+AGP + G +G + G PG G +G+E
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPG-AAGRVGPPGPSGNAGPPGPPGPAGKE 904
Query: 208 GRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFG 267
G + + G PG+ G PG A ++ + G P+GA G + +A + G
Sbjct: 905 GGKGPRGETG--PAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR---G 959
Query: 268 AGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAA 327
L G+ ERG G P P+
Sbjct: 960 VVGLPGQ----------RGERGF-----------------------------PGLPGPSG 980
Query: 328 EPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSRRL 387
EP Q + G G P GP P GPP + P R A R
Sbjct: 981 EPGKQGPSGASGERG-PPGP-MGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038
Query: 388 FSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRR 447
P PG P+ P K + P + PVGA R
Sbjct: 1039 TGPAGPPGAPGA----PGAPGPVGP-AGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPR 1093
Query: 448 RTRPEPG-PARRGARAE--------PPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGA 498
+ E G RG + PPGPP GS Q PSG +G G
Sbjct: 1094 GDKGETGEQGDRGIKGHRGFSGLQGPPGPP----------GSPGEQGPSGASGPAGPRGP 1143
Query: 499 VG-ARSPG-DVLGSGGGLIG 516
G A +PG D L G IG
Sbjct: 1144 PGSAGAPGKDGLNGLPGPIG 1163
Score = 40.4 bits (93), Expect = 0.005
Identities = 70/235 (29%), Positives = 83/235 (35%), Gaps = 50/235 (21%)
Query: 162 PFGKPGS-GAAGPCQSRELLGK-GSGGLSQELQGSER-GLPGGGGS-GREGRLLVQQQLG 217
P G+PG G +G R G G GL+ S R G PG GS GR+G + G
Sbjct: 978 PSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRG 1037
Query: 218 VDTG-----SLPGKPGGPGEKSLAQK---RQNTGVRVPSGAHVASGQKSLAWEHWKFGAG 269
+TG PG PG PG A K R TG P+G G + A G
Sbjct: 1038 -ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDK 1096
Query: 270 SLDGEWWETKKEFLWEEERGI-GTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAE 328
GE + +RGI G G+Q P G P A+
Sbjct: 1097 GETGE----------QGDRGIKGHRGFSGLQGPP----------GPPGSPGEQGPSGASG 1136
Query: 329 PVSQAGPP----SPGHAG--------RPRGPEA----ARPCARGPPSQEPGPPRP 367
P GPP +PG G P GP A P P PGPP P
Sbjct: 1137 PAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Score = 38.1 bits (87), Expect = 0.023
Identities = 74/281 (26%), Positives = 92/281 (32%), Gaps = 67/281 (23%)
Query: 326 AAEPVSQAGPPSP-------GHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRL 378
A+ P+ GPP P G AG+P RP RGPP + P L
Sbjct: 213 ASGPMGPRGPPGPPGKNGDDGEAGKP-----GRPGERGPPGPQGARGLPGTAGL------ 261
Query: 379 RAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGAN 438
+ R FS + G P P E S P
Sbjct: 262 -PGMKGHRGFSGLDGAK---------GDAGPAGPKGEPGSPGENGAP-----------GQ 300
Query: 439 SVERAARRRRTRP-EPGPARRGAR--------AEPPGPPTLQDPPASHLGSSPAQAPSGE 489
R R RP PGPA GAR A PPGP PP G A GE
Sbjct: 301 MGPRGLPGERGRPGAPGPA--GARGNDGATGAAGPPGPTGPAGPP----GFPGAVGAKGE 354
Query: 490 AGRRAGGGAVGARS-------PGDVLGSG-GGLIGSDSLPPADPLRLSHPEPGVVPFQNL 541
AG + G+ G + PG +G G G+D P A + ++ PG+
Sbjct: 355 AGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGA---KGANGAPGIAGAPGF 411
Query: 542 RSQRDLRNPSHQRKPGVHVTSSVQPGFQGR--GLCFQGEPG 580
R P P +S +PG G +GEPG
Sbjct: 412 PGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPG 452
Score = 33.9 bits (76), Expect = 0.43
Identities = 94/389 (24%), Positives = 120/389 (30%), Gaps = 91/389 (23%)
Query: 162 PFGKPGSGAA-GPCQSRELLGKGSGGLSQELQ---GSERGLPGGGGS-GREGRLLVQQQL 216
P G PG G P S K +GG+S RGLPG G+ G +G
Sbjct: 149 PPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQG-------- 200
Query: 217 GVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWW 276
G PG PGE + G R P G +G A + + G G
Sbjct: 201 ------FQGPPGEPGEPGASGPM---GPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP-- 249
Query: 277 ETKKEFLWEEERGI-GTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGP 335
+ RG+ GT L G++ H G + + A P + G
Sbjct: 250 --------QGARGLPGTAGLPGMKG----------HRGFSGLDGAKGDAGPAGPKGEPGS 291
Query: 336 PSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQ 395
P A GP RG P + P P P R + GAA
Sbjct: 292 PGENGAPGQMGP-------RGLPGERGRPGAPGPAGARGNDG-----------ATGAAGP 333
Query: 396 LPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGP 455
PG P P + + P+ P G+ + R EPGP
Sbjct: 334 --------PGPTGPAGPPGFPGAVGAKGEAGPQG----PRGSEGPQGV------RGEPGP 375
Query: 456 ARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG--- 512
A P G P P A+ +G G G GAR P G GG
Sbjct: 376 PGPAGAAGPAGNPGADGQPG-------AKGANGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
Query: 513 --GLIGSDSLPPADPLRLSHPEPGVVPFQ 539
G G P + + EPG V Q
Sbjct: 429 PKGNSGEPGAPGSKGDTGAKGEPGPVGVQ 457
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 56.2 bits (134), Expect = 8e-08
Identities = 64/191 (33%), Positives = 70/191 (36%), Gaps = 29/191 (15%)
Query: 329 PVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSRRLF 388
P A PP+P A PRG AA A PP+ P PP P P A AA P+R
Sbjct: 102 PRRGATPPAPPRA--PRGAPAAAAAAAPPPTPAP-PPPPAPVA--------AAAPARAPR 150
Query: 389 SRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRR 448
+ AA P PG P +P A P P P +V A RR
Sbjct: 151 AAAAAATAP----PSPG---PAQPGPRAQRAAPLAAPPP-----APAAPPAVAPPAGPRR 198
Query: 449 TRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGR-RAGGGA--VGARSPG 505
P AR PP PP PP P P E G RAGG A V R
Sbjct: 199 APPPAVAAREPPLPPPPQPPA---PPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVV 255
Query: 506 DVLGSGGGLIG 516
LG GG G
Sbjct: 256 RYLGGSGGAGG 266
Score = 41.6 bits (96), Expect = 0.002
Identities = 43/149 (28%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 387 LFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAAR- 445
L SR A L ++ RH P P + + +E + + + L + G+ S AAR
Sbjct: 42 LRSRKARPDLERICRMVRRRHGP-EPERTR-AELEKLIQQRAVLRVSYKGSISYRNAARV 99
Query: 446 ----RRRTRPEPGPARRGA-----RAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
R T P P A RGA A PP P PPA ++PA+AP A
Sbjct: 100 QPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP 159
Query: 497 GAVGARSPGDVLGSGGGLIGSDSLPPADP 525
+ G PG L P A P
Sbjct: 160 PSPGPAQPGPRAQRAAPLAAPPPAPAAPP 188
Score = 38.1 bits (87), Expect = 0.023
Identities = 35/108 (32%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 434 PVGANSVERAARRRRTR----PEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGE 489
PV A + RA R P PGPA+ G RA+ P L PP + P+G
Sbjct: 139 PVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAP--LAAPPPAPAAPPAVAPPAGP 196
Query: 490 AGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVP 537
RRA AV AR P + PPA P + P P P
Sbjct: 197 --RRAPPPAVAAREPP---------LPPPPQPPAPPQQQQPPPPQPQP 233
Score = 30.0 bits (66), Expect = 6.2
Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPP---RPWPCALRPRPR-- 377
P PAA P PP+ P A P PP Q P PP +P P +P P
Sbjct: 182 PAPAAPPA--VAPPAGPRRAPPPAVAAREPPL-PPPPQPPAPPQQQQPPPPQPQPPPEGG 238
Query: 378 -LRAALPSRRLFSRGAAQQL----PCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHL 432
+RA +R + R + L +L GR ++ E+ + AR RL R
Sbjct: 239 AVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGR---VQGLLEEEAAARGRLERTR---- 291
Query: 433 QPVGANSVERAARRRRTRP----EPGPARRG 459
+GA ++ R R R P P ++RG
Sbjct: 292 --LGALALPRGDRPGRAPPAASARPSRSKRG 320
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 55.5 bits (132), Expect = 1e-07
Identities = 107/398 (26%), Positives = 131/398 (32%), Gaps = 61/398 (15%)
Query: 158 GKGCPFGKPGSGAAGPCQSRELLGKGSGGLSQELQG--SERGLPGGGG-SGREGRLLVQQ 214
GKG G G GP R G Q QG E G PG G +G G
Sbjct: 83 GKGVGLGPGPMGLMGP---RGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPG 139
Query: 215 QLGVDTGSLPGKPGGPGEKSLAQKRQNTG------------VRVPSGAHVASGQKSLAWE 262
+ G D PGKPG PGE+ + + G +R +G GQ
Sbjct: 140 KAGED--GHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGV 197
Query: 263 HWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGS 322
+ GA +G +T L E +G G + G D SVG
Sbjct: 198 KGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGAR-GSDG--------------SVGP 242
Query: 323 PCPAAEPVSQAGPP----SPGHAGRPRGPEAARPCARGPPSQEPG-PPRPWPCALRPRPR 377
PA P+ AGPP +PG G A P P E G P P P
Sbjct: 243 VGPAG-PIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPG 301
Query: 378 ---LRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQP 434
L A + L A LP R +P + AR + EP +
Sbjct: 302 ANGLTGAKGAAGLPGVAGAPGLP------GPRGIPGPVGAAGATGARGLVGEPGPAGSKG 355
Query: 435 VGANSVERAARRRRTRPEP-------GPARRGARAEPPGPPTLQDPPASH--LGSSPAQA 485
N E + + P P GP A PPGPP L+ P S G+
Sbjct: 356 ESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAG 415
Query: 486 PSGEAGRRAGGGAVGARSPGDVLGSGG--GLIGSDSLP 521
G G R G G R P G G GL+G LP
Sbjct: 416 VMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLP 453
Score = 52.4 bits (124), Expect = 1e-06
Identities = 110/417 (26%), Positives = 143/417 (34%), Gaps = 45/417 (10%)
Query: 154 RKRSGKGCPFGKPGS-GAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGGSGREGRLLV 212
R R G P G GS G+ GP +G G + + G +G G
Sbjct: 222 RGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGP 281
Query: 213 QQQLGVDTGSLP-GKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSL 271
+ ++G+ S P G PG PG L + G+ +GA G + + GA
Sbjct: 282 RGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA 341
Query: 272 DGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAA---E 328
G E E G G Q P + E S G P P
Sbjct: 342 RGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS 401
Query: 329 PVSQAGPPSPGHAGRPRGPEAARPCARGP-----PSQEPGPPRPWPCALRPRPRLRAALP 383
P S+ P + G AG GP +R A GP P+ + G P P + PR LP
Sbjct: 402 PGSRGLPGADGRAG-VMGPPGSRG-ASGPAGVRGPNGDAGRPGE-PGLMGPR-----GLP 453
Query: 384 SRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERA 443
A ++ P GR P+ P + P P+ P G N +
Sbjct: 454 GSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDP-GKNGDKGH 512
Query: 444 ARRRRTRPEPGP-------------ARRGARAE--PPGPPTLQ-----DPPASHLGSSPA 483
A R PGP +G + E PPGPP Q PA +G
Sbjct: 513 AGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGE 572
Query: 484 QAPSGEAGRRAGGGAVGARSPGDVLGSGG--GLIGS--DSLPPADPLRLSHPEPGVV 536
+ GE G G G R P G+ G G IGS S PP + EPGVV
Sbjct: 573 RGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPD--GNKGEPGVV 627
Score = 47.8 bits (112), Expect = 3e-05
Identities = 98/383 (25%), Positives = 123/383 (32%), Gaps = 66/383 (17%)
Query: 152 PSRKRSGKGCPFGKPGSGAAGPCQSRELLG-------KGSGGLSQEL----QGSERGLPG 200
P+ R +G P +G GP SR G KG G+ + GLPG
Sbjct: 584 PAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPG 643
Query: 201 G-------GGSGREGRLLVQQQLGVD----TGSLPGKPGGPGEKSLAQKRQNTGVRVPSG 249
GG G +G ++ ++G PG G PG R G P+G
Sbjct: 644 ERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAG 703
Query: 250 AHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLV 309
G E G G + + ERG +GP
Sbjct: 704 PAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGA-KGERGA---------KGPK------ 747
Query: 310 EHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHA---GRPRG----PEAARPCARGPPSQEP 362
G V+ P AA P GPP P + G P G P AA PS
Sbjct: 748 ---GENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGIS 804
Query: 363 GPPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARR 422
GPP P P P + L R + PG P E +
Sbjct: 805 GPPGP------PGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPP 858
Query: 423 RLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEP-----PGPPTLQDPPASH 477
P P+ L +GA + R R PG A GA EP GPP + PP +
Sbjct: 859 GTPGPQGL----LGAPGILGLPGSRGERGLPGVA--GAVGEPGPLGIAGPPGARGPPGA- 911
Query: 478 LGSSPAQAPSGEAGRRAGGGAVG 500
+GS GEAGR G G
Sbjct: 912 VGSPGVNGAPGEAGRDGNPGNDG 934
Score = 44.3 bits (103), Expect = 3e-04
Identities = 104/403 (25%), Positives = 130/403 (32%), Gaps = 51/403 (12%)
Query: 159 KGCPFGKPGSGAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGGS----GREGRLLVQQ 214
+G P +GA GP + + G G G +GLPG G G+ G +
Sbjct: 519 RGAPGPDGNNGAQGPPGPQGVQG-GKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHG 577
Query: 215 QLGVDTGSLP-GKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDG 273
+ G+ + P G+ G PGE A G R PSG G K E GA G
Sbjct: 578 EFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKG---EPGVVGAVGTAG 634
Query: 274 EWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQA 333
+ L E G G + P +R E+ + G P
Sbjct: 635 P---SGPSGLPGERGAAGIPGGKGEKGEPGLR---------GEIGNPGRDGARGAP-GAV 681
Query: 334 GPPSPGHAGRPRGPE-AARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSRRLFSRGA 392
G P P A RG AA P P PG R + A P+ GA
Sbjct: 682 GAPGPAGATGDRGEAGAAGPAGPAGPRGSPGE----------RGEVGPAGPNGFAGPAGA 731
Query: 393 AQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPE 452
A Q PG R K E P P G N A R
Sbjct: 732 AGQ--------PGAKGE-RGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGP 782
Query: 453 PG----PARRGARAEPPGPPTLQDPPA--SHLGSSPAQAPSGEAGRRAGGGAVGARSPGD 506
PG P G R PPGP + PP G + P G+ G G VGA P
Sbjct: 783 PGMTGFPGAAG-RTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPG 841
Query: 507 VLGSGG--GLIGSDSLPPADPLRLSHPEPGVVPFQNLRSQRDL 547
G G G G+ P + PG++ R +R L
Sbjct: 842 FAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGL 884
Score = 37.0 bits (84), Expect = 0.050
Identities = 100/406 (24%), Positives = 128/406 (31%), Gaps = 80/406 (19%)
Query: 160 GCPFGKPGSGAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGGS-------------GR 206
G P K GA GP ++G +G + G PG GS G
Sbjct: 733 GQPGAKGERGAKGPKGENGVVGP-TGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGA 791
Query: 207 EGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKF 266
GR G+ PG PG G++ L R + G +G A G A E
Sbjct: 792 AGRTGPPGPSGIS--GPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPS 849
Query: 267 GAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPA 326
G G + L +G G + P V + G + + P A
Sbjct: 850 GEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAV----GEPGPLGIAGPPGA 905
Query: 327 AEPVSQAGPP----SPGHAGRPRGPEAARPCARGPPSQEPGP----PRPWPCALRPRPRL 378
P G P +PG AGR P GPP ++ P R +P + P
Sbjct: 906 RGPPGAVGSPGVNGAPGEAGRD-----GNPGNDGPPGRDGQPGHKGERGYPGNIGPV--- 957
Query: 379 RAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGAN 438
GAA PG H P+ P KH P + P GA
Sbjct: 958 ------------GAAGA--------PGPHGPVGP-AGKHGNRGETGPSGP---VGPAGAV 993
Query: 439 SVERAARRRRTRPEPG-PARRGARAEP--PGPPTLQDPP--ASHLGSSPAQA-------- 485
+ + R + G P +G R P G LQ P A H G A
Sbjct: 994 GPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPR 1053
Query: 486 ----PSGEAGRRAGGGAVGARSPGDVLGSGG--GLIGSDSLPPADP 525
PSG AG+ G G P + G G G G PP P
Sbjct: 1054 GPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPG-PPGPP 1098
Score = 32.7 bits (73), Expect = 0.95
Identities = 39/136 (28%), Positives = 45/136 (33%), Gaps = 22/136 (16%)
Query: 454 GPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG- 512
GP G P GPP P G Q P+GE G G GAR P G G
Sbjct: 89 GPGPMGLMG-PRGPPGAAGAP----GPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGE 143
Query: 513 -------GLIGSDSLPPADPLRLSHPEPGVVPFQNLRSQRDLRNPSHQ-RKPGVHVTSSV 564
G G + R PG+ F+ +R L Q PGV
Sbjct: 144 DGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGV----KG 199
Query: 565 QPGFQGRGLCFQGEPG 580
+PG G G PG
Sbjct: 200 EPGAPGE----NGTPG 211
Score = 31.6 bits (70), Expect = 2.1
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 447 RRTRPEPGPARRGARAEPPGPPTLQDPPA------------SHLGSSPAQAPSGEAGRRA 494
R R PGP R P GPP PP G P G G R
Sbjct: 41 RGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRG 100
Query: 495 GGGAVGARSPGDVLGSGG 512
GA GA P G G
Sbjct: 101 PPGAAGAPGPQGFQGPAG 118
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 54.7 bits (130), Expect = 2e-07
Identities = 121/459 (26%), Positives = 158/459 (34%), Gaps = 55/459 (11%)
Query: 155 KRSGKGCPF--GKPG-SGAAGPCQSRELLGKGSGGLSQELQGSE--RGLPGGGGSGREGR 209
+R G G P G PG +G GP G G G + +GLPG GG E
Sbjct: 595 ERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENG 654
Query: 210 LLVQQQLGVDTGSLPGKPGG------PGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEH 263
+ D G+ PG PGG PGE+ G+R +G G K A
Sbjct: 655 KPGEPGPKGDAGA-PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP 713
Query: 264 WKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQ---GPDVRFLLVEHWGTTEVMSV 320
GA G + + E G+G+ G + GP + + +
Sbjct: 714 GPPGAAGTPG------LQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPI 767
Query: 321 GSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQ--EPGPPRPWPCALRPRPRL 378
G P PA +P + G G P P A P RG P + E GPP P P
Sbjct: 768 GPPGPAGQPGDK------GEGGAPGLPGIAGP--RGSPGERGETGPPGPAGFPGAPGQNG 819
Query: 379 RAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGAN 438
R + P PG P P + + R P P GA
Sbjct: 820 EPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFP-GAR 878
Query: 439 SVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGA 498
+ PGP+ + PPGP P GS P G+AG+ G+
Sbjct: 879 GLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAP----GSPGVSGPKGDAGQPGEKGS 934
Query: 499 VGARSPGDVLGSGG--GLIGSDSL--PPADPLRLSHPEP-------GVVPFQNLRSQRDL 547
GA+ P G G G+ G+ L PP P P P G L +R
Sbjct: 935 PGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERG- 993
Query: 548 RNPSHQRKPGVHVTSSVQPGFQGR----GLCFQ-GEPGG 581
P Q PG+ T+ +PG G GL + G PGG
Sbjct: 994 -PPGPQGLPGLAGTAG-EPGRDGNPGSDGLPGRDGSPGG 1030
Score = 53.1 bits (126), Expect = 7e-07
Identities = 122/449 (27%), Positives = 151/449 (33%), Gaps = 84/449 (18%)
Query: 158 GKGCPFGKPGS----GAAGPCQSRELLGKGS--GGLSQELQGSERGLPGGGGS-GREGRL 210
G+ P G PG+ GA GP G GG + + +G PG G G G
Sbjct: 396 GEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIP 455
Query: 211 LVQQQLGVD--TGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGA 268
V G D GS PG+PG G A +R G R P+G + G+K A E G
Sbjct: 456 GVPGAKGEDGKDGS-PGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGP 514
Query: 269 GSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAE 328
G E ++ GV GP +R G P
Sbjct: 515 AGPRGAAGEPGRD---------------GVPGGPGMR---------------GMPGSPGG 544
Query: 329 PVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALR-PRPRLRAALPSR-- 385
P S P PG G E+ RP GPP P PR P + P P+ P +
Sbjct: 545 PGSDGKPGPPGSQG-----ESGRP---GPPG--PSGPRGQPGVMGFPGPKGNDGAPGKNG 594
Query: 386 -RLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLH-----LQPVGANS 439
R G Q P G P P + P P+ L P G N
Sbjct: 595 ERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENG 654
Query: 440 VERAARRRRTRPEPG-PARRGARAEP--PGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
+ PG P +G P GPP L P G+ P P E G+ A G
Sbjct: 655 KPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGP---PGPEGGKGAAG 711
Query: 497 -----GAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVPFQNLRSQRDLRNPS 551
GA G + G GGL GS P D EPG + + R P+
Sbjct: 712 PPGPPGAAGTPGLQGMPGERGGL-GSPG-PKGD-----KGEPGGPGADGVPGKDGPRGPT 764
Query: 552 HQRKPGVHVTSSVQPGFQGRGLCFQGEPG 580
P + QPG +G G G PG
Sbjct: 765 GPIGP---PGPAGQPGDKGEG----GAPG 786
Score = 44.3 bits (103), Expect = 3e-04
Identities = 71/249 (28%), Positives = 87/249 (34%), Gaps = 37/249 (14%)
Query: 321 GSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRA 380
G P PA P P + GH G P P P + GPP P P A+ P
Sbjct: 171 GYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGP-PGAIGPSGPAGK 229
Query: 381 ALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPV-GANS 439
S R R + LP + +P P + H R E + + G N
Sbjct: 230 DGESGRP-GRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENG 288
Query: 440 VE-----------RAARRRRTRPE-PGPA----RRGARAE-----PPGPP-TLQDP---- 473
+ R A R RP PG A GAR PPGPP T P
Sbjct: 289 LPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPG 348
Query: 474 ------PASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGL--IGSDSLPPADP 525
PA GS+ A GE G + GA G P + GS GG +G +P A
Sbjct: 349 AKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPG 408
Query: 526 LRLSHPEPG 534
L + PG
Sbjct: 409 LMGARGPPG 417
Score = 43.5 bits (101), Expect = 5e-04
Identities = 88/352 (25%), Positives = 105/352 (29%), Gaps = 62/352 (17%)
Query: 153 SRKRSGKGCPFGKPGS-GAAGPCQSRELLGKG--SGGLSQELQGSERGLPGGGGSGREGR 209
S G P G PG G GP + G SG Q E+G PG G
Sbjct: 886 SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP----- 940
Query: 210 LLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAG 269
PG PG G + R G G + G + + E K GA
Sbjct: 941 --------------PGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGAN 986
Query: 270 SLDGEWWETKKEFLWEEERGI-GTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAE 328
L GE + L G+ GT G P L GSP +
Sbjct: 987 GLSGERGPPGPQGL----PGLAGTAGEPGRDGNPGSDGLPGRD---------GSPGGKGD 1033
Query: 329 PVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSRRLF 388
P +PG G P P P + E GP P A P P
Sbjct: 1034 RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGP---AGAPGP----------AG 1080
Query: 389 SRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRR 448
SRGA PG P E + R P GA A ++
Sbjct: 1081 SRGA-----------PGPQGPRGDKGETGERGAAGIKGHRGFPGNP-GAPGSPGPAGQQG 1128
Query: 449 TRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVG 500
PGPA P GPP +D + H G P G G R G+ G
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPG-KDGTSGHPGPIGPPGPRGNRGERGSEGSPG 1179
Score = 41.6 bits (96), Expect = 0.002
Identities = 124/471 (26%), Positives = 161/471 (34%), Gaps = 78/471 (16%)
Query: 149 PVLPSRKRSGKGCPFGKPGS-GAAGPCQSRELLGKGSGGLSQELQGSE--RGLPGGGGSG 205
P +P R G P G+PGS G+ GP E G S + + G+ GG +G
Sbjct: 114 PGIPGRN-GDPGIP-GQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAG 171
Query: 206 REGRLLVQQQLGVD-TGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHW 264
G G T PG PG PG + + G P G A G A +
Sbjct: 172 YPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDG 231
Query: 265 KFGAGSLDGEWWETKKEFLWEEERGI----GTEFLGGVQQGPDVRFLLVEHWGTTEVMSV 320
+ G G ERG+ G + G+ P ++ E
Sbjct: 232 ESGRPGRPG-------------ERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGET 278
Query: 321 GSPCPAAE---PVSQAGP------PSPGHAGRPRGPEAA----RPCARGPPSQEPGPPRP 367
G+P E P P +PG GRP P AA ARG Q PGPP P
Sbjct: 279 GAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ-PGPPGP 337
Query: 368 WPCALRP-RPRLRAAL-PSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLP 425
A P P + + P+ S GA PG+ P + H+ A+ P
Sbjct: 338 PGTAGFPGSPGAKGEVGPAGSPGSNGA-----------PGQRG--EPGPQGHAGAQGP-P 383
Query: 426 EPRQLHLQPVGANSVERAARRRRTRPEPG-PARRGARAEPPGPPTLQDPP-----ASHLG 479
P ++ P G + A PG P GAR PPGP P A G
Sbjct: 384 GPPGINGSPGGKGEMGPAG-------IPGAPGLMGARG-PPGPAGANGAPGLRGGAGEPG 435
Query: 480 SSPAQ---APSGEAGRRAGGGAVGARSPGDVLGSGG-----GLIGSDSLPPADPLRLSHP 531
+ A+ P GE G G GA+ GS G GL G+ A R
Sbjct: 436 KNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAG 495
Query: 532 EPGVVPFQNLRSQRDLRNPSHQRKPGVHVTSSVQPGFQG-RGLCFQGEPGG 581
G+ + +R P+ R PG G RG+ G PGG
Sbjct: 496 PNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGM--PGSPGG 544
Score = 40.4 bits (93), Expect = 0.005
Identities = 71/249 (28%), Positives = 89/249 (35%), Gaps = 45/249 (18%)
Query: 158 GKGCPFGKPGS-GAAGPCQSRELLGK-GSGGLSQEL-QGSERGLPGGGGS----GREGRL 210
G P G PG G+ GP + GK G+ GLS E +GLPG G+ GR+G
Sbjct: 957 GLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNP 1016
Query: 211 LVQQQLGVD-------------TGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQK 257
G D + PG PG PG +G R SG +G
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP 1076
Query: 258 SLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEV 317
A G G+ ET + G + G + P +
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGER---------GAAGIKGHRGFPGNPGAPGSPGPAGQQ 1127
Query: 318 MSVGSPCPAAE--PVSQAGPP----SPGHAG-----RPRGPEAARPCARGP--PSQ--EP 362
++GSP PA PV +GPP + GH G PRG R P P Q P
Sbjct: 1128 GAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPP 1187
Query: 363 GPP-RPWPC 370
GPP P PC
Sbjct: 1188 GPPGAPGPC 1196
Score = 33.1 bits (74), Expect = 0.73
Identities = 113/438 (25%), Positives = 146/438 (33%), Gaps = 86/438 (19%)
Query: 154 RKRSGKGCPFGKPGSGAAGPCQSRELLGKGSGGLSQEL-QGSERGL---PGGGG-SGREG 208
R +G P G PG+ P Q+ E GKG G E +G G+ PGG G +G G
Sbjct: 800 RGETGPPGPAGFPGA----PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPG 855
Query: 209 RLLVQQQLGVDTGSLPGKPGGPGEKSLAQ---KRQNTGVRVPSGAHVASGQKSLAWEHWK 265
V+ + G G PG G PG + L N G PSG+ G A
Sbjct: 856 PQGVKGERGSPGG--PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGA 913
Query: 266 FGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCP 325
G+ + G + + G + G Q P G + +
Sbjct: 914 PGSPGVSGPKGDAGQP---------GEKGSPGAQGPP----------GAPGPLGIAGITG 954
Query: 326 AAEPVSQAGPPSPGHAGRPRGP--EAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALP 383
A G P P + P+G E+ +P A G S E GP P P L P L
Sbjct: 955 ARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGL-SGERGP--PGPQGL---PGLAGTAG 1008
Query: 384 SRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERA 443
+ LP GR ++ P H P G
Sbjct: 1009 EPGRDGNPGSDGLP-------GRDGSPGGKGDRGENGSPGAPGAPG-HPGPPGPVG---P 1057
Query: 444 ARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARS 503
A + R E GPA P G P PA G+ Q P G+ G GA G +
Sbjct: 1058 AGKSGDRGESGPAG------PAGAPG----PAGSRGAPGPQGPRGDKGETGERGAAGIKG 1107
Query: 504 ----PGD--VLGSGG-----GLIGSDS-LPPADPLRLSHP--------EPGVVPFQNLRS 543
PG+ GS G G IGS P P+ S P PG + R
Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRG 1167
Query: 544 QRDLR----NPSHQRKPG 557
R R +P H +PG
Sbjct: 1168 NRGERGSEGSPGHPGQPG 1185
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 53.5 bits (127), Expect = 5e-07
Identities = 105/399 (26%), Positives = 130/399 (32%), Gaps = 63/399 (15%)
Query: 155 KRSGKGCPFGKPGSGAAGPCQSRELLGKGSGGLSQELQGSERGLPGG-------GGSGRE 207
K +G P G GP R G+ +Q LQG RGLPG G SG
Sbjct: 679 KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGP-RGLPGTPGTDGPKGASGPA 737
Query: 208 GRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFG 267
G Q G+ +PG+ G G R + G + P GA G + L G
Sbjct: 738 GPPGAQGPPGLQ--GMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG 795
Query: 268 AGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAA 327
+GE E G G + P R G T G P PA
Sbjct: 796 PAGANGEKGEVGPP---------GPAGSAGARGAPGER-------GET-----GPPGPA- 833
Query: 328 EPVSQAGPP----SPGHAGRP----RGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLR 379
AGPP PG G + +A P +G PS PGP P R
Sbjct: 834 ---GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG-PSGAPGPQGPTGVTGPKGARGA 889
Query: 380 AALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPF-KEKHSEARRRLPEPRQLHLQPVGAN 438
P F A + P +PG P P K+ AR P + G
Sbjct: 890 QGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR-----AGEP 944
Query: 439 SVERAARRRRTRPEPGPARRGARAEPPGPPTLQDP--------PASHLGSSPAQAPSGEA 490
++ A + EPG PPGP L G PSGE
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP 1004
Query: 491 GRRAGGGAVGARSPGDVLGSGG-----GLIGSDSLPPAD 524
G++ GA G R P +G G G G + P AD
Sbjct: 1005 GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD 1043
Score = 47.8 bits (112), Expect = 3e-05
Identities = 120/450 (26%), Positives = 145/450 (32%), Gaps = 84/450 (18%)
Query: 162 PFGKPGSGAAGPCQSRELLG----KGSGGLSQELQG-----SERGLPGGGGS-------- 204
P G PG G + ++ G K G +QG RG PG G+
Sbjct: 166 PPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQG 225
Query: 205 --GREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVR---VPSGAHVASGQKSL 259
G G V +G PG PG PG+ A K G R P GA G L
Sbjct: 226 NPGEPGEPGVSGPMG--PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 283
Query: 260 AWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMS 319
G LDG E + E G G GP R L E T +
Sbjct: 284 PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG-PMGP--RGLPGERGRTGPAGA 340
Query: 320 VGSPCPAAEPVSQAGPPSP-GHAGRPRGP-------EAARPCARGP-----PSQEPGPP- 365
G+ +P AGPP P G AG P P EA ARGP P EPG P
Sbjct: 341 AGARGNDGQP-GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 399
Query: 366 RPWPCALRPRP---RLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARR 422
P P P + A S A P + PG P K
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP-GPRGPPGPQGATGPLGPKGQTGEP 458
Query: 423 RL--------PEPRQLHLQPVGANSVERAARRRRTRPEPG-------PARRGA------- 460
+ P+ P GA +R R EPG P RGA
Sbjct: 459 GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 518
Query: 461 ----RAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARS----PGDVLGSG- 511
A P G P + P G + + +G+ GR G GAR PGD G
Sbjct: 519 GQDGLAGPKGAPGERGPS----GLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 512 ---GGLIGSDSLPPADPLRLSHPEPGVVPF 538
G G D P + + +PGV+ F
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARGQPGVMGF 604
Score = 44.3 bits (103), Expect = 3e-04
Identities = 104/385 (27%), Positives = 127/385 (32%), Gaps = 60/385 (15%)
Query: 149 PVLPSRKRSGKGCPFGKPGS-GAAGPCQSRELLGKGSGGLSQELQGSERGLPGG----GG 203
P P G G P G PG+ G AGP +R G +Q +G E G PG G
Sbjct: 355 PPGPVGPAGGPGFP-GAPGAKGEAGPTGARGPEG------AQGPRG-EPGTPGSPGPAGA 406
Query: 204 SGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEH 263
SG G T +PG G G +A G R P G A+G +
Sbjct: 407 SGNPG-----------TDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQT 455
Query: 264 WKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSP 323
+ G GE E G + G R E G V +G P
Sbjct: 456 GEPGIAGFKGEQGPK------GEPGPAGPQGAPGPAGEEGKRGARGEPGG---VGPIGPP 506
Query: 324 CPAAEPVSQAGPPSPGHAG-----RPRGPE--AARPCARGPPSQEPGPPRPWPCALRPRP 376
P ++ P G AG RGP A A G P + P P L RP
Sbjct: 507 GERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP 566
Query: 377 RLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVG 436
A P ++ GA + GR P P + P P+ + +P G
Sbjct: 567 --GDAGPQGKVGPSGAPGE--------DGRPGPPGPQGARGQPGVMGFPGPKGANGEP-G 615
Query: 437 ANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
+ R PG A PPGP PA G A PSG G
Sbjct: 616 KAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA----GPAGERGEQGAPGPSGFQGLPGPP 671
Query: 497 GAVG-ARSPGD--VLGSGG--GLIG 516
G G PGD V G G GL+G
Sbjct: 672 GPPGEGGKPGDQGVPGEAGAPGLVG 696
Score = 43.5 bits (101), Expect = 5e-04
Identities = 118/477 (24%), Positives = 146/477 (30%), Gaps = 140/477 (29%)
Query: 149 PVLPSRKRSGKGCPF-----GKPGS-----GAAGPCQSRELLGKGSGGLSQELQGSERGL 198
P+ P+ + G P G+PG G GP + G+ G E+G
Sbjct: 87 PICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGE-QGPRGDRGDKGEKGA 145
Query: 199 PGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKS 258
PG GR+G PG PG PG P G G
Sbjct: 146 PGP--RGRDGE--------------PGTPGNPG---------------PPGPPGPPGPPG 174
Query: 259 LAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVM 318
L AG D E+ G + GV QGP +
Sbjct: 175 LGGNFAAQMAGGFD--------------EKAGGAQL--GVMQGP-----------MGPMG 207
Query: 319 SVGSPCPAAEPVSQAGPPSPGHAGRP--------RGP-----------EAARPCA---RG 356
G P PA P Q +PG G P RGP EA +P RG
Sbjct: 208 PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERG 267
Query: 357 PPSQE-----PGPPR-PWPCALRPRPRL-----RAALPSRRLFSRGAAQQLPCCYKLHPG 405
PP + PG P P R P L A P + S + G
Sbjct: 268 PPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN---------G 318
Query: 406 RHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPP 465
P+ P R LP R G AA R +PGPA P
Sbjct: 319 SPGPMGP---------RGLPGER-------GRTGPAGAAGARGNDGQPGPAGPPGPVGPA 362
Query: 466 GPPTLQDPPAS--HLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPA 523
G P P + G + A+ P G G R G G SPG SG G+D +P A
Sbjct: 363 GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG--SPGPAGASGNP--GTDGIPGA 418
Query: 524 DPLRLSHPEPGVVPFQNLRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGLCFQGEPG 580
+ S PG+ R P P + +PG G F+GE G
Sbjct: 419 ---KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAG----FKGEQG 468
Score = 40.8 bits (94), Expect = 0.003
Identities = 70/229 (30%), Positives = 86/229 (37%), Gaps = 41/229 (17%)
Query: 162 PFGKPGS-GAAGPCQSRELLGK-GSGGLSQEL-QGSERGLPGGGGS-GREGRLLVQQQLG 217
P G+PG GA G R G G GL+ + G PG G GR+G V+ G
Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRG 1059
Query: 218 VDTGSL--PGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEW 275
+TG++ PG PG PG A G R +GA G A G G+
Sbjct: 1060 -ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGD- 1117
Query: 276 WETKKEFLWEEERGI-GTEFLGGVQ--QGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQ 332
K E ERG+ G G+Q GP G + P A P
Sbjct: 1118 ---KGEAGEPGERGLKGHRGFTGLQGLPGPP---------GPSGDQGASGP---AGPSGP 1162
Query: 333 AGPPSP-GHAGR--------PRGPEAARPCA-----RGPPSQEPGPPRP 367
GPP P G +G+ P GP R + GPP PGPP P
Sbjct: 1163 RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPG-NPGPPGP 1210
Score = 32.7 bits (73), Expect = 0.95
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 149 PVLPSRKRSGKGCPFGKPGSGAAGPCQSRELLGKGS--GGLSQELQGSERGLPGGGG-SG 205
P P+ K+ +G + G +GP +R + G G + + ERGL G G +G
Sbjct: 1078 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1137
Query: 206 REGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQ 256
+G LPG PG G++ + +G R P G SG+
Sbjct: 1138 LQG--------------LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGK 1174
Score = 32.0 bits (71), Expect = 1.6
Identities = 65/245 (26%), Positives = 78/245 (31%), Gaps = 42/245 (17%)
Query: 157 SGKGCPFGKPG-SGAAGPCQSRELLGKGSGGLSQELQG-----SERGLPGGGG-SGREGR 209
+G P G PG SG GP +R G LQG E+G PG G SG EG
Sbjct: 911 NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP 970
Query: 210 LLVQQQLGV----------DTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSL 259
Q G PG PG GE +G R P G G
Sbjct: 971 PGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGP 1030
Query: 260 AWEHWKFGAGSLDGEWWETKKEFLWEEERG----IGTEFLGGVQQGPDVRFLLVEHWGTT 315
A E + G+ DG + + +RG +G G P G T
Sbjct: 1031 AGEPGREGSPGADGPPGRDGAAGV-KGDRGETGAVGAPGAPGPPGSPGPA-------GPT 1082
Query: 316 EVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGP-----EAARPCARGPPSQE--------P 362
A P+ +GP P+GP EA P RG P
Sbjct: 1083 GKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLP 1142
Query: 363 GPPRP 367
GPP P
Sbjct: 1143 GPPGP 1147
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 53.5 bits (127), Expect = 5e-07
Identities = 105/399 (26%), Positives = 130/399 (32%), Gaps = 63/399 (15%)
Query: 155 KRSGKGCPFGKPGSGAAGPCQSRELLGKGSGGLSQELQGSERGLPGG-------GGSGRE 207
K +G P G GP R G+ +Q LQG RGLPG G SG
Sbjct: 610 KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGP-RGLPGTPGTDGPKGASGPA 668
Query: 208 GRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFG 267
G Q G+ +PG+ G G R + G + P GA G + L G
Sbjct: 669 GPPGAQGPPGLQ--GMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG 726
Query: 268 AGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAA 327
+GE E G G + P R G T G P PA
Sbjct: 727 PAGANGEKGEVGPP---------GPAGSAGARGAPGER-------GET-----GPPGPA- 764
Query: 328 EPVSQAGPP----SPGHAGRP----RGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLR 379
AGPP PG G + +A P +G PS PGP P R
Sbjct: 765 ---GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG-PSGAPGPQGPTGVTGPKGARGA 820
Query: 380 AALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPF-KEKHSEARRRLPEPRQLHLQPVGAN 438
P F A + P +PG P P K+ AR P + G
Sbjct: 821 QGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR-----AGEP 875
Query: 439 SVERAARRRRTRPEPGPARRGARAEPPGPPTLQDP--------PASHLGSSPAQAPSGEA 490
++ A + EPG PPGP L G PSGE
Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP 935
Query: 491 GRRAGGGAVGARSPGDVLGSGG-----GLIGSDSLPPAD 524
G++ GA G R P +G G G G + P AD
Sbjct: 936 GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD 974
Score = 47.8 bits (112), Expect = 3e-05
Identities = 120/450 (26%), Positives = 145/450 (32%), Gaps = 84/450 (18%)
Query: 162 PFGKPGSGAAGPCQSRELLG----KGSGGLSQELQG-----SERGLPGGGGS-------- 204
P G PG G + ++ G K G +QG RG PG G+
Sbjct: 97 PPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQG 156
Query: 205 --GREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVR---VPSGAHVASGQKSL 259
G G V +G PG PG PG+ A K G R P GA G L
Sbjct: 157 NPGEPGEPGVSGPMG--PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 214
Query: 260 AWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMS 319
G LDG E + E G G GP R L E T +
Sbjct: 215 PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG-PMGP--RGLPGERGRTGPAGA 271
Query: 320 VGSPCPAAEPVSQAGPPSP-GHAGRPRGP-------EAARPCARGP-----PSQEPGPP- 365
G+ +P AGPP P G AG P P EA ARGP P EPG P
Sbjct: 272 AGARGNDGQP-GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 330
Query: 366 RPWPCALRPRP---RLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARR 422
P P P + A S A P + PG P K
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP-GPRGPPGPQGATGPLGPKGQTGEP 389
Query: 423 RL--------PEPRQLHLQPVGANSVERAARRRRTRPEPG-------PARRGA------- 460
+ P+ P GA +R R EPG P RGA
Sbjct: 390 GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 449
Query: 461 ----RAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARS----PGDVLGSG- 511
A P G P + P G + + +G+ GR G GAR PGD G
Sbjct: 450 GQDGLAGPKGAPGERGPS----GLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 505
Query: 512 ---GGLIGSDSLPPADPLRLSHPEPGVVPF 538
G G D P + + +PGV+ F
Sbjct: 506 VGPSGAPGEDGRPGPPGPQGARGQPGVMGF 535
Score = 44.3 bits (103), Expect = 3e-04
Identities = 104/385 (27%), Positives = 127/385 (32%), Gaps = 60/385 (15%)
Query: 149 PVLPSRKRSGKGCPFGKPGS-GAAGPCQSRELLGKGSGGLSQELQGSERGLPGG----GG 203
P P G G P G PG+ G AGP +R G +Q +G E G PG G
Sbjct: 286 PPGPVGPAGGPGFP-GAPGAKGEAGPTGARGPEG------AQGPRG-EPGTPGSPGPAGA 337
Query: 204 SGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEH 263
SG G T +PG G G +A G R P G A+G +
Sbjct: 338 SGNPG-----------TDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQT 386
Query: 264 WKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSP 323
+ G GE E G + G R E G V +G P
Sbjct: 387 GEPGIAGFKGEQGPK------GEPGPAGPQGAPGPAGEEGKRGARGEPGG---VGPIGPP 437
Query: 324 CPAAEPVSQAGPPSPGHAG-----RPRGPE--AARPCARGPPSQEPGPPRPWPCALRPRP 376
P ++ P G AG RGP A A G P + P P L RP
Sbjct: 438 GERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP 497
Query: 377 RLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVG 436
A P ++ GA + GR P P + P P+ + +P G
Sbjct: 498 --GDAGPQGKVGPSGAPGE--------DGRPGPPGPQGARGQPGVMGFPGPKGANGEP-G 546
Query: 437 ANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
+ R PG A PPGP PA G A PSG G
Sbjct: 547 KAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA----GPAGERGEQGAPGPSGFQGLPGPP 602
Query: 497 GAVG-ARSPGD--VLGSGG--GLIG 516
G G PGD V G G GL+G
Sbjct: 603 GPPGEGGKPGDQGVPGEAGAPGLVG 627
Score = 42.7 bits (99), Expect = 0.001
Identities = 112/443 (25%), Positives = 141/443 (31%), Gaps = 102/443 (23%)
Query: 174 CQSRELLGKGSGGLSQELQGSERGLPGGGGS-GREGRLLVQQQLGVDTGSLPGKPGGPGE 232
CQ +++ G G E G + + G G G +G Q G D G G+ G PG
Sbjct: 23 CQGQDVRQPGPKGQKGE-PGDIKDIVGPKGPPGPQGPAGEQGPRG-DRGD-KGEKGAPGP 79
Query: 233 KSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGT 292
+ + G P G G L AG D E+ G
Sbjct: 80 RGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFD--------------EKAGGA 125
Query: 293 EFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRP-------- 344
+ GV QGP + G P PA P Q +PG G P
Sbjct: 126 QL--GVMQGP-----------MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGP 172
Query: 345 RGP-----------EAARPCA---RGPPSQE-----PGPPR-PWPCALRPRPRL-----R 379
RGP EA +P RGPP + PG P P R P L
Sbjct: 173 RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGE 232
Query: 380 AALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANS 439
A P + S + G P+ P R LP R G
Sbjct: 233 AGAPGVKGESGSPGEN---------GSPGPMGP---------RGLPGER-------GRTG 267
Query: 440 VERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPAS--HLGSSPAQAPSGEAGRRAGGG 497
AA R +PGPA P G P P + G + A+ P G G R G
Sbjct: 268 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG 327
Query: 498 AVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPGVVPFQNLRSQRDLRNPSHQRKPG 557
G SPG SG G+D +P A + S PG+ R P P
Sbjct: 328 TPG--SPGPAGASGNP--GTDGIPGA---KGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 380
Query: 558 VHVTSSVQPGFQGRGLCFQGEPG 580
+ +PG G F+GE G
Sbjct: 381 GPKGQTGEPGIAG----FKGEQG 399
Score = 40.8 bits (94), Expect = 0.003
Identities = 70/229 (30%), Positives = 86/229 (37%), Gaps = 41/229 (17%)
Query: 162 PFGKPGS-GAAGPCQSRELLGK-GSGGLSQEL-QGSERGLPGGGGS-GREGRLLVQQQLG 217
P G+PG GA G R G G GL+ + G PG G GR+G V+ G
Sbjct: 931 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRG 990
Query: 218 VDTGSL--PGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEW 275
+TG++ PG PG PG A G R +GA G A G G+
Sbjct: 991 -ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGD- 1048
Query: 276 WETKKEFLWEEERGI-GTEFLGGVQ--QGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQ 332
K E ERG+ G G+Q GP G + P A P
Sbjct: 1049 ---KGEAGEPGERGLKGHRGFTGLQGLPGPP---------GPSGDQGASGP---AGPSGP 1093
Query: 333 AGPPSP-GHAGR--------PRGPEAARPCA-----RGPPSQEPGPPRP 367
GPP P G +G+ P GP R + GPP PGPP P
Sbjct: 1094 RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPG-NPGPPGP 1141
Score = 32.7 bits (73), Expect = 0.95
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 149 PVLPSRKRSGKGCPFGKPGSGAAGPCQSRELLGKGS--GGLSQELQGSERGLPGGGG-SG 205
P P+ K+ +G + G +GP +R + G G + + ERGL G G +G
Sbjct: 1009 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1068
Query: 206 REGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQ 256
+G LPG PG G++ + +G R P G SG+
Sbjct: 1069 LQG--------------LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGK 1105
Score = 32.0 bits (71), Expect = 1.6
Identities = 65/245 (26%), Positives = 78/245 (31%), Gaps = 42/245 (17%)
Query: 157 SGKGCPFGKPG-SGAAGPCQSRELLGKGSGGLSQELQG-----SERGLPGGGG-SGREGR 209
+G P G PG SG GP +R G LQG E+G PG G SG EG
Sbjct: 842 NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP 901
Query: 210 LLVQQQLGV----------DTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSL 259
Q G PG PG GE +G R P G G
Sbjct: 902 PGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGP 961
Query: 260 AWEHWKFGAGSLDGEWWETKKEFLWEEERG----IGTEFLGGVQQGPDVRFLLVEHWGTT 315
A E + G+ DG + + +RG +G G P G T
Sbjct: 962 AGEPGREGSPGADGPPGRDGAAGV-KGDRGETGAVGAPGAPGPPGSPGPA-------GPT 1013
Query: 316 EVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGP-----EAARPCARGPPSQE--------P 362
A P+ +GP P+GP EA P RG P
Sbjct: 1014 GKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLP 1073
Query: 363 GPPRP 367
GPP P
Sbjct: 1074 GPPGP 1078
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 52.8 bits (125), Expect = 9e-07
Identities = 101/384 (26%), Positives = 122/384 (31%), Gaps = 106/384 (27%)
Query: 162 PFGKPGS-GAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDT 220
P G PG+ G GP GG+ E+G PG G
Sbjct: 1259 PSGAPGADGPQGP----------PGGIGNPGAVGEKGEPGEAGEP--------------- 1293
Query: 221 GSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKK 280
LPG+ G PG K +R G PSGA G K + G+ G
Sbjct: 1294 -GLPGEGGPPGPKG---ERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVG------- 1342
Query: 281 EFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGH 340
+ + G E Q GP + E GSP P EP +GPP
Sbjct: 1343 ---FPGDPGPPGEPGPAGQDGPPG-----DKGDDGEPGQTGSPGPTGEP-GPSGPPGKRG 1393
Query: 341 AGRPRGPEAAR--------------PCARGPPSQEPGPPRPWPCALR------------- 373
P GPE + P GP + P +P P LR
Sbjct: 1394 PPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPG 1453
Query: 374 -------PRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPE 426
P P LP + P K HPG + P E+ + R LP
Sbjct: 1454 SPGPDGPPGPMGPPGLPGLK------GDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1507
Query: 427 PRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASH--LGSSPAQ 484
P Q P G + T P GP PPGPP L PP GSS
Sbjct: 1508 P-QGSSGPKGEQGI--------TGPS-GPIG------PPGPPGLPGPPGPKGAKGSSGPT 1551
Query: 485 APSGEAGRRAGGGAVGARSPGDVL 508
P GEAG G G PG+V+
Sbjct: 1552 GPKGEAGHPGPPGPPG--PPGEVI 1573
Score = 42.7 bits (99), Expect = 0.001
Identities = 108/407 (26%), Positives = 130/407 (31%), Gaps = 77/407 (18%)
Query: 157 SGKGCPFGKPG----SGAAGPCQSRELLG-KGSGGLSQELQGSERGLPGGGGSGREGRLL 211
+G P G+PG G GP + L G KG G RG PG G
Sbjct: 1182 TGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEG--------PRGFPGPPGP------- 1226
Query: 212 VQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGV---RVPSGAHVASGQKSLAWEHWKFGA 268
V LPG PG GE + G R PSGA A G + GA
Sbjct: 1227 ------VGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGA 1280
Query: 269 GSLDGEWWETKKEFLWEE--------ERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSV 320
GE E + L E ERG E GP +
Sbjct: 1281 VGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPG-----PKGPPGDDGPK 1335
Query: 321 GSPCPAAEPVSQAGPPSPGHAGRPRGP----EAARPCARGP--PSQEPGPPRPWPCALRP 374
GSP P P P PG AG+ P + P G P+ EPGP P P
Sbjct: 1336 GSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPP 1395
Query: 375 RPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLH--L 432
P A P R +GA + + PG+ P+ P + P P L
Sbjct: 1396 GP----AGPEGRQGEKGAKGE--AGLEGPPGKTGPIGP------QGAPGKPGPDGLRGIP 1443
Query: 433 QPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPA-----SHLGSSPAQAPS 487
PVG + + PGP PPG P L+ H G P
Sbjct: 1444 GPVGEQGLPGS---------PGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPP 1494
Query: 488 GEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHPEPG 534
GE G + G G + G G S + P P L P PG
Sbjct: 1495 GEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGP-PG 1540
Score = 38.1 bits (87), Expect = 0.023
Identities = 58/203 (28%), Positives = 71/203 (34%), Gaps = 47/203 (23%)
Query: 334 GPPSP-GHAGRPRGP-------EAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSR 385
GPP P G AG P P + P RGPP + P P L P LP R
Sbjct: 469 GPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGR---PGLPGADGLPGPPGTMLMLPFR 525
Query: 386 RLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAAR 445
F G G P+ +E S+A+ L + R P G +
Sbjct: 526 --FGGGG----------DAGSKGPMVSAQE--SQAQAILQQARLALRGPAGPMGLTG--- 568
Query: 446 RRRTRPEPGPARRGARAEP-----PGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVG 500
R P P G + EP GP +Q PP P+G+ GRR G+ G
Sbjct: 569 --RPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPG----------PAGKPGRRGRAGSDG 616
Query: 501 ARSPGDVLGSGG--GLIGSDSLP 521
AR G G G G LP
Sbjct: 617 ARGMPGQTGPKGDRGFDGLAGLP 639
Score = 37.7 bits (86), Expect = 0.030
Identities = 102/393 (25%), Positives = 124/393 (31%), Gaps = 70/393 (17%)
Query: 158 GKGCPFGKPG----SGAAGPC--QSRELLGKGSGGLSQELQGSERGLPGG----GGSGRE 207
G+ P GKPG GA GP +E GG G PG G G
Sbjct: 742 GEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIR 801
Query: 208 GRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFG 267
G + + G D G PG G+ + R G P G G K + G
Sbjct: 802 GLKGTKGEKGED-----GFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPG 856
Query: 268 AGSLDGEWWETKKEFLWEEERGIGTEFLGGV--QQGPDVRFLLVEHWGTT-EVMSVGSPC 324
GE + +G L G +QGP G E G+P
Sbjct: 857 PLGPPGE------------KGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPG 904
Query: 325 PAAEPVSQAGPPSP-------GHAGRPRGPE--------AARPCARGP-----PSQEPGP 364
P Q GP P G G+P GP+ A P RGP P+ PGP
Sbjct: 905 KPG-PRGQRGPTGPRGERGPRGITGKP-GPKGNSGGDGPAGPPGERGPNGPQGPTGFPGP 962
Query: 365 PRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRL 424
P P P + LP Q PG P P E R
Sbjct: 963 KGP------PGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGH 1016
Query: 425 PEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPG----PPTLQDP-PASHLG 479
P P P G + A + T+ +PGPA + PPG P P P LG
Sbjct: 1017 PGPPG----PPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALG 1072
Query: 480 SSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG 512
+ P G G G+ G R P G G
Sbjct: 1073 LKGNEGPPGPPG---PAGSPGERGPAGAAGPIG 1102
Score = 37.7 bits (86), Expect = 0.030
Identities = 102/385 (26%), Positives = 119/385 (30%), Gaps = 108/385 (28%)
Query: 158 GKGCPFGKPGSGAAGPCQSRELLGKGSGGLSQELQGSERGLPG-GGGSGREGRLLVQQQL 216
G+G P G PG GP + LG GLPG G G +G +
Sbjct: 847 GRGGPNGDPGP--LGPPGEKGKLGVP-------------GLPGYPGRQGPKGSI------ 885
Query: 217 GVDTGSLPGKPGGPGEKS---LAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDG 273
PG PG GEK K G R P+G G + + + G DG
Sbjct: 886 -----GFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDG 940
Query: 274 EWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQA 333
ERG QGP G P P P
Sbjct: 941 PAGPPG-------ERGPNGP------QGP-----------------TGFPGPKGPP---- 966
Query: 334 GPPS----PGHAGR-----------PRGPEAA----RPCARGPPSQEPGPPRPWPCALRP 374
GPP PGH G+ P GP P P E G P P P
Sbjct: 967 GPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGP------P 1020
Query: 375 RPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVP--LRPFKEKHSEARRRLPEP-RQLH 431
P LP L + + P L PG+ P LR F R LP P L
Sbjct: 1021 GPPGEQGLPG--LAGKEGTKGDPGPAGL-PGKDGPPGLRGFP-----GDRGLPGPVGALG 1072
Query: 432 LQ----PVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPS 487
L+ P G + R GP R P GPP PA G+ + P
Sbjct: 1073 LKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPG----PAGEKGAPGEKGPQ 1128
Query: 488 GEAGRRAGGGAVGARSPGDVLGSGG 512
G AGR G VG P +G G
Sbjct: 1129 GPAGRDGLQGPVGLPGPAGPVGPPG 1153
Score = 35.8 bits (81), Expect = 0.11
Identities = 49/196 (25%), Positives = 64/196 (32%), Gaps = 31/196 (15%)
Query: 332 QAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSRRLFSRG 391
+ GPP P P GP+ RG P+ +PGP P P + + +P +
Sbjct: 830 EIGPPGPRGEDGPEGPKG-----RGGPNGDPGPLGP------PGEKGKLGVPGLPGYPGR 878
Query: 392 AAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRP 451
+ + PG + EK P PR P G ER R
Sbjct: 879 QGPKGSIGFPGFPGAN------GEKGGRGTPGKPGPRG-QRGPTGPRG-ERGP--RGITG 928
Query: 452 EPGPARRGARAEPPGPPTLQDP--PASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLG 509
+PGP P GPP + P P G + P G G+ G G R G
Sbjct: 929 KPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG 988
Query: 510 SGGGLIGSDSLPPADP 525
G PP P
Sbjct: 989 KTG--------PPGPP 996
Score = 35.4 bits (80), Expect = 0.15
Identities = 110/425 (25%), Positives = 132/425 (31%), Gaps = 104/425 (24%)
Query: 155 KRSGKGCPFGKPG-------SGAAGPCQSRELLGK-----GSGGLSQELQGSERGLPGG- 201
++ G+G P GKPG +G G R + GK SGG ERG P G
Sbjct: 896 EKGGRGTP-GKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERG-PNGP 953
Query: 202 -GGSGREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLA 260
G +G G G D LPG PG GE K G G +G+
Sbjct: 954 QGPTGFPGPKGPPGPPGKD--GLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPM 1011
Query: 261 WEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSV 320
E G GE + G L G P +R G +
Sbjct: 1012 GERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLR-------GFPGDRGL 1064
Query: 321 GSPCPAAEPVSQAGPPSP-GHAGRP--RGPEAA--------RPCARGPPSQ--------E 361
P A GPP P G AG P RGP A RP +GPP E
Sbjct: 1065 PGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGE 1124
Query: 362 PGPPRP-------WPCALRPRPRLRAALPSR-----------RLFSRG------------ 391
GP P P L P P P + S+G
Sbjct: 1125 KGPQGPAGRDGLQGPVGL-PGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTG 1183
Query: 392 ----AAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRR 447
Q P PG F +K E R P P PVG +
Sbjct: 1184 PQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPG----PVGLQGL------- 1232
Query: 448 RTRPEPGPARRGARAE-----PPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGAR 502
P P P +G + PPGPP + P G+ A P G G GAVG +
Sbjct: 1233 ---PGP-PGEKGETGDVGQMGPPGPPGPRGPS----GAPGADGPQGPPGGIGNPGAVGEK 1284
Query: 503 -SPGD 506
PG+
Sbjct: 1285 GEPGE 1289
Score = 34.3 bits (77), Expect = 0.33
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 452 EPGPARRGARAEPPGPP-----TLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGD 506
EPGP PPGPP T D G+ Q G G++ GA G P
Sbjct: 677 EPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQG 736
Query: 507 VLGSGG--GLIGSDSLP 521
+G G G +G LP
Sbjct: 737 AIGPPGEKGPLGKPGLP 753
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 52.4 bits (124), Expect = 1e-06
Identities = 77/269 (28%), Positives = 94/269 (34%), Gaps = 47/269 (17%)
Query: 339 GHAGRPRGPEAARPCAR---GPPSQEPG------PPRPWPCALRPRPRLRAALPSRRLFS 389
G +G RGP A P GPP Q PG P P P P A S +
Sbjct: 67 GSSGGSRGPSPAHPWTTPQPGPPHQ-PGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYC 125
Query: 390 RGAAQQ-----LPCCYKLHPGRHVPLRPFKEKHSEARRRL---PEPRQLHLQPVGANSVE 441
GA L H VP + A L PE R Q +G S
Sbjct: 126 AGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAAR-QGLGGRSAR 184
Query: 442 RAARR---RRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGA 498
RR R RPEPGP GAR P P T A+ GS+ A+ P+ R GG+
Sbjct: 185 ARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSA-ARGPA----RHLRGGS 239
Query: 499 VGARSPGDVLG----SGGGLIGSDSLPPADPLRLSHPEPGVVPFQNLR------------ 542
V A + LG L S PLR P + P R
Sbjct: 240 VAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVNWNQSSRPA 299
Query: 543 ---SQRDLRN-PSHQRKPGVHVTSSVQPG 567
+QR R+ PS R G+ ++ +PG
Sbjct: 300 SHNAQRAARHIPSRPRASGLRARAARRPG 328
Score = 36.6 bits (83), Expect = 0.066
Identities = 55/165 (33%), Positives = 63/165 (38%), Gaps = 19/165 (11%)
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAAL 382
P P QAGP PG GR R ARGP G A R L +
Sbjct: 199 PGPHHTGARQAGP-LPGTRGRTRAAGTGS-AARGPARHLRGGSVAAAAAARC---LGLSP 253
Query: 383 PSR-RLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVE 441
P R RLFS ++ P P R P RP ARRR +P N+ +
Sbjct: 254 PGRSRLFSPRSSLARP------PLRFPPARPALSP--SARRRCRVNWNQSSRPASHNA-Q 304
Query: 442 RAARRRRTRPEPGPARRGARAEP---PGP-PTLQDPPASHLGSSP 482
RAAR +RP R A P PGP P P A G+SP
Sbjct: 305 RAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAALRPGTSP 349
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 52.4 bits (124), Expect = 1e-06
Identities = 77/269 (28%), Positives = 94/269 (34%), Gaps = 47/269 (17%)
Query: 339 GHAGRPRGPEAARPCAR---GPPSQEPG------PPRPWPCALRPRPRLRAALPSRRLFS 389
G +G RGP A P GPP Q PG P P P P A S +
Sbjct: 67 GSSGGSRGPSPAHPWTTPQPGPPHQ-PGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYC 125
Query: 390 RGAAQQ-----LPCCYKLHPGRHVPLRPFKEKHSEARRRL---PEPRQLHLQPVGANSVE 441
GA L H VP + A L PE R Q +G S
Sbjct: 126 AGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAAR-QGLGGRSAR 184
Query: 442 RAARR---RRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGA 498
RR R RPEPGP GAR P P T A+ GS+ A+ P+ R GG+
Sbjct: 185 ARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSA-ARGPA----RHLRGGS 239
Query: 499 VGARSPGDVLG----SGGGLIGSDSLPPADPLRLSHPEPGVVPFQNLR------------ 542
V A + LG L S PLR P + P R
Sbjct: 240 VAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVNWNQSSRPA 299
Query: 543 ---SQRDLRN-PSHQRKPGVHVTSSVQPG 567
+QR R+ PS R G+ ++ +PG
Sbjct: 300 SHNAQRAARHIPSRPRASGLRARAARRPG 328
Score = 36.6 bits (83), Expect = 0.066
Identities = 55/165 (33%), Positives = 63/165 (38%), Gaps = 19/165 (11%)
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAAL 382
P P QAGP PG GR R ARGP G A R L +
Sbjct: 199 PGPHHTGARQAGP-LPGTRGRTRAAGTGS-AARGPARHLRGGSVAAAAAARC---LGLSP 253
Query: 383 PSR-RLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVE 441
P R RLFS ++ P P R P RP ARRR +P N+ +
Sbjct: 254 PGRSRLFSPRSSLARP------PLRFPPARPALSP--SARRRCRVNWNQSSRPASHNA-Q 304
Query: 442 RAARRRRTRPEPGPARRGARAEP---PGP-PTLQDPPASHLGSSP 482
RAAR +RP R A P PGP P P A G+SP
Sbjct: 305 RAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAALRPGTSP 349
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 52.4 bits (124), Expect = 1e-06
Identities = 77/269 (28%), Positives = 94/269 (34%), Gaps = 47/269 (17%)
Query: 339 GHAGRPRGPEAARPCAR---GPPSQEPG------PPRPWPCALRPRPRLRAALPSRRLFS 389
G +G RGP A P GPP Q PG P P P P A S +
Sbjct: 67 GSSGGSRGPSPAHPWTTPQPGPPHQ-PGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYC 125
Query: 390 RGAAQQ-----LPCCYKLHPGRHVPLRPFKEKHSEARRRL---PEPRQLHLQPVGANSVE 441
GA L H VP + A L PE R Q +G S
Sbjct: 126 AGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAAR-QGLGGRSAR 184
Query: 442 RAARR---RRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGA 498
RR R RPEPGP GAR P P T A+ GS+ A+ P+ R GG+
Sbjct: 185 ARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSA-ARGPA----RHLRGGS 239
Query: 499 VGARSPGDVLG----SGGGLIGSDSLPPADPLRLSHPEPGVVPFQNLR------------ 542
V A + LG L S PLR P + P R
Sbjct: 240 VAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVNWNQSSRPA 299
Query: 543 ---SQRDLRN-PSHQRKPGVHVTSSVQPG 567
+QR R+ PS R G+ ++ +PG
Sbjct: 300 SHNAQRAARHIPSRPRASGLRARAARRPG 328
Score = 36.6 bits (83), Expect = 0.066
Identities = 55/165 (33%), Positives = 63/165 (38%), Gaps = 19/165 (11%)
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAAL 382
P P QAGP PG GR R ARGP G A R L +
Sbjct: 199 PGPHHTGARQAGP-LPGTRGRTRAAGTGS-AARGPARHLRGGSVAAAAAARC---LGLSP 253
Query: 383 PSR-RLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVE 441
P R RLFS ++ P P R P RP ARRR +P N+ +
Sbjct: 254 PGRSRLFSPRSSLARP------PLRFPPARPALSP--SARRRCRVNWNQSSRPASHNA-Q 304
Query: 442 RAARRRRTRPEPGPARRGARAEP---PGP-PTLQDPPASHLGSSP 482
RAAR +RP R A P PGP P P A G+SP
Sbjct: 305 RAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAALRPGTSP 349
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 52.0 bits (123), Expect = 2e-06
Identities = 104/401 (25%), Positives = 135/401 (33%), Gaps = 70/401 (17%)
Query: 162 PFGKPGS-GAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGG-SGREGRLLVQQQLGVD 219
P G PG G+AG L G+ G E+G PG G G GR VQ +G+
Sbjct: 1067 PVGSPGERGSAGTAGPIGLPGR-PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP 1125
Query: 220 TGSLP-GKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWET 278
+ P G PG G+K + G + G + G L G DGE
Sbjct: 1126 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPR 1185
Query: 279 KKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEP-----VSQA 333
++ ++ ++ G G GP + G P P E V
Sbjct: 1186 GQQGMFGQKGDEGARGFPG-PPGP--------------IGLQGLPGPPGEKGENGDVGPM 1230
Query: 334 GPPSPGHAGRPRGPEAARPCARGPPSQ--------EPGPPRPWPCALRPRPRLRAAL--P 383
GPP P P+GP A +GPP E G P A P P A + P
Sbjct: 1231 GPPGPPGPRGPQGPNGA-DGPQGPPGSVGSVGGVGEKGEPGE---AGNPGPPGEAGVGGP 1286
Query: 384 SRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLP-------EPRQLHLQPVG 436
+G A P PG P K + P EP P G
Sbjct: 1287 KGERGEKGEAG--PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP-----GPAG 1339
Query: 437 ANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
+ V +PGP A PPGPP + PP G++ A+ GE G +
Sbjct: 1340 QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP----GAAGAEGRQGEKGAKGEA 1395
Query: 497 GA---------VGARSPGDVLGSGG-----GLIGSDSLPPA 523
GA VG + P G G G +G LP A
Sbjct: 1396 GAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1436
Score = 47.0 bits (110), Expect = 5e-05
Identities = 124/467 (26%), Positives = 156/467 (33%), Gaps = 113/467 (24%)
Query: 156 RSGKGCPFGKPG----SGAAGPCQSRELLG----KGSGGLSQE--------LQGSERGLP 199
R G P G PG +G+ G + +G KGS G E LQG G P
Sbjct: 1115 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV-GAP 1173
Query: 200 G-GGGSGREGRLLVQQQLGV--DTGS--LPGKPGGPGEKSL----AQKRQN--------- 241
G GG G G Q G D G+ PG PG G + L +K +N
Sbjct: 1174 GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPP 1233
Query: 242 --TGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQ 299
G R P G + A G + G GE E E G+G
Sbjct: 1234 GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP-PGEAGVG-------- 1284
Query: 300 QGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPP-------SPGHAGRPRGPEAARP 352
GP G P AA P GPP +PG G P P P
Sbjct: 1285 -GPK---------GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP--GPP 1332
Query: 353 CARGPPSQE--------------PGPPRPWPCALRPRPRLRAALPSR-----RLFSRGAA 393
GP Q+ PGPP P A P P + P R +GA
Sbjct: 1333 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1392
Query: 394 QQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEP 453
+ + PG+ P+ P A + PE + PVG + AA + P
Sbjct: 1393 GEAGA--EGPPGKTGPVGP----QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP---P 1443
Query: 454 GPARRGARAEPPGPPTLQDPPAS-----HLGSSPAQAPSGEAGRRAGGGAVGARSPGDVL 508
GP PPG P L+ P S H G P GE G + G G +
Sbjct: 1444 GPMG------PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAK 1497
Query: 509 GSGGGLIGSDSLP-PADPLRLSHPEPGVVPFQNLRSQRDLRNPSHQR 554
G GG +P PA PL P PG+ Q + + P+ Q+
Sbjct: 1498 GDGG-------IPGPAGPLGPPGP-PGLPGPQGPKGNKGSTGPAGQK 1536
Score = 42.7 bits (99), Expect = 0.001
Identities = 107/411 (26%), Positives = 132/411 (32%), Gaps = 83/411 (20%)
Query: 148 VPVLPSRK-RSGKGCPFGKPG-SGAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGG-S 204
VP LP R G G PG GA G +R + GK G Q RG G G +
Sbjct: 851 VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK-PGPRGQRGPTGPRGSRGARGPT 909
Query: 205 GREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHW 264
G+ G G G G PG PGE+ + G P G G+ L
Sbjct: 910 GKPG------PKGTSGGD--GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPG 961
Query: 265 KFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGV--QQGPDVRFLLVEHWGTTEVMSVGS 322
+ G G+ G GGV QGP T + G
Sbjct: 962 QRGETGFQGK---------------TGPPGPGGVVGPQGPTGE--------TGPIGERGH 998
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGP-------------------EAARPCARGPPSQEPG 363
P P P Q P + G G P E P A+G P + G
Sbjct: 999 PGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGG 1058
Query: 364 PPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARR- 422
P P P P R S G A P PG P P EK + +
Sbjct: 1059 EGPQGP----PGP---VGSPGER-GSAGTAG--PIGLPGRPGPQGPPGPAGEKGAPGEKG 1108
Query: 423 -RLPEPRQLHLQPVGANSVERAARRRRTRPEPG----PARRGARAE-----PPGPPTLQD 472
+ P R PVG A + G P ++G++ + PPGPP LQ
Sbjct: 1109 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG 1168
Query: 473 PPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG--GLIGSDSLP 521
P +G+ GE G R G G + G G G IG LP
Sbjct: 1169 P----VGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1215
Score = 38.1 bits (87), Expect = 0.023
Identities = 68/240 (28%), Positives = 85/240 (35%), Gaps = 44/240 (18%)
Query: 293 EFLGGVQQGPDVRFLLVE-HWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAAR 351
EF GV D+ + H E G P + GPP P GP
Sbjct: 412 EFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP---- 467
Query: 352 PCARGP--PSQEPGPPRPWPCALRPRPRLRAA--LPSRRLFSRGAAQQLPCCYKLHPGRH 407
P +GP P +PG P RP L A LP G LP Y G
Sbjct: 468 PGLQGPTGPPGDPGDRGP-----PGRPGLPGADGLPG----PPGTMLMLPFRYG-GDGSK 517
Query: 408 VPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAE---- 463
P +E ++A+ L + R P G + R P GP GA+ E
Sbjct: 518 GPTISAQE--AQAQAILQQARIALRGPPGPMGLTG-----RPGPVGGPGSSGAKGESGDP 570
Query: 464 -PPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARS-PGDVLGSGGGLIGSDSLP 521
P GP +Q PP P+G+ G+R GA G R PG+ G G D LP
Sbjct: 571 GPQGPRGVQGPPG----------PTGKPGKRGRPGADGGRGMPGEPGAKGDR--GFDGLP 618
Score = 32.7 bits (73), Expect = 0.95
Identities = 115/471 (24%), Positives = 156/471 (33%), Gaps = 93/471 (19%)
Query: 154 RKRSGKGCPFGKPGSGAAGPCQSRELLG-KGSGGLSQELQGSERGLPG-GGGSGREGRLL 211
R G+ P G PG AGP R LLG +G+ G + G+ G G G +G +
Sbjct: 645 RGEDGEIGPRGLPGE--AGP---RGLLGPRGTPGAP-----GQPGMAGVDGPPGPKGNMG 694
Query: 212 VQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSL 271
Q + G PG+ G PG + L + G P G G+ LA G
Sbjct: 695 PQGEPGP-----PGQQGNPGPQGLPGPQGPIG---PPGEKGPQGKPGLA------GLPGA 740
Query: 272 DGEWWETKKEFLWEEERGIGTE-------FLG--GVQQGPDVRFLLVEHWGTTEVMSVGS 322
DG KE E+ +G + G GV+ VR L E G
Sbjct: 741 DGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGL---KGSKGEKGEDGF 797
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAAR-PCARGPPSQEPGPPRPWPCALRPRPRLRAA 381
P + + G G PRG + P R P+ +PGP + + +
Sbjct: 798 PGFKGDMGLKGDRGEVGQIG-PRGEDGPEGPKGRAGPTGDPGPSG------QAGEKGKLG 850
Query: 382 LPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVE 441
+P + + + PG + EK + P PR P G
Sbjct: 851 VPGLPGYPGRQGPKGSTGFPGFPGAN------GEKGARGVAGKPGPRGQR-GPTGPRGSR 903
Query: 442 RAARRRRTRPEPGPARRGARAEPPGPPTLQDP--PASHLGSSPAQAPSGEAGRRAGGGAV 499
A R +PGP PPGPP + P P +G + P G G+ G
Sbjct: 904 GA---RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHP 960
Query: 500 GAR------------SPGDVLGSGG-----------------GLIGSDSLPPADPLRLSH 530
G R PG V+G G G G LP A +
Sbjct: 961 GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAK 1020
Query: 531 PEPGVVPFQNLRSQRDLRN-PSHQRKPGVHVTSSVQPGFQGRGLCFQGEPG 580
+PG LR P + PG + PG +G G QG PG
Sbjct: 1021 GDPGPQGISGKDGPAGLRGFPGERGLPG----AQGAPGLKG-GEGPQGPPG 1066
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 52.0 bits (123), Expect = 2e-06
Identities = 104/401 (25%), Positives = 135/401 (33%), Gaps = 70/401 (17%)
Query: 162 PFGKPGS-GAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGG-SGREGRLLVQQQLGVD 219
P G PG G+AG L G+ G E+G PG G G GR VQ +G+
Sbjct: 1016 PVGSPGERGSAGTAGPIGLPGR-PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP 1074
Query: 220 TGSLP-GKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWET 278
+ P G PG G+K + G + G + G L G DGE
Sbjct: 1075 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPR 1134
Query: 279 KKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEP-----VSQA 333
++ ++ ++ G G GP + G P P E V
Sbjct: 1135 GQQGMFGQKGDEGARGFPG-PPGP--------------IGLQGLPGPPGEKGENGDVGPM 1179
Query: 334 GPPSPGHAGRPRGPEAARPCARGPPSQ--------EPGPPRPWPCALRPRPRLRAAL--P 383
GPP P P+GP A +GPP E G P A P P A + P
Sbjct: 1180 GPPGPPGPRGPQGPNGA-DGPQGPPGSVGSVGGVGEKGEPGE---AGNPGPPGEAGVGGP 1235
Query: 384 SRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLP-------EPRQLHLQPVG 436
+G A P PG P K + P EP P G
Sbjct: 1236 KGERGEKGEAG--PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP-----GPAG 1288
Query: 437 ANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
+ V +PGP A PPGPP + PP G++ A+ GE G +
Sbjct: 1289 QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP----GAAGAEGRQGEKGAKGEA 1344
Query: 497 GA---------VGARSPGDVLGSGG-----GLIGSDSLPPA 523
GA VG + P G G G +G LP A
Sbjct: 1345 GAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1385
Score = 47.0 bits (110), Expect = 5e-05
Identities = 124/467 (26%), Positives = 156/467 (33%), Gaps = 113/467 (24%)
Query: 156 RSGKGCPFGKPG----SGAAGPCQSRELLG----KGSGGLSQE--------LQGSERGLP 199
R G P G PG +G+ G + +G KGS G E LQG G P
Sbjct: 1064 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV-GAP 1122
Query: 200 G-GGGSGREGRLLVQQQLGV--DTGS--LPGKPGGPGEKSL----AQKRQN--------- 241
G GG G G Q G D G+ PG PG G + L +K +N
Sbjct: 1123 GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPP 1182
Query: 242 --TGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQ 299
G R P G + A G + G GE E E G+G
Sbjct: 1183 GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP-PGEAGVG-------- 1233
Query: 300 QGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPP-------SPGHAGRPRGPEAARP 352
GP G P AA P GPP +PG G P P P
Sbjct: 1234 -GPK---------GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP--GPP 1281
Query: 353 CARGPPSQE--------------PGPPRPWPCALRPRPRLRAALPSR-----RLFSRGAA 393
GP Q+ PGPP P A P P + P R +GA
Sbjct: 1282 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1341
Query: 394 QQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEP 453
+ + PG+ P+ P A + PE + PVG + AA + P
Sbjct: 1342 GEAGA--EGPPGKTGPVGP----QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP---P 1392
Query: 454 GPARRGARAEPPGPPTLQDPPAS-----HLGSSPAQAPSGEAGRRAGGGAVGARSPGDVL 508
GP PPG P L+ P S H G P GE G + G G +
Sbjct: 1393 GPMG------PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAK 1446
Query: 509 GSGGGLIGSDSLP-PADPLRLSHPEPGVVPFQNLRSQRDLRNPSHQR 554
G GG +P PA PL P PG+ Q + + P+ Q+
Sbjct: 1447 GDGG-------IPGPAGPLGPPGP-PGLPGPQGPKGNKGSTGPAGQK 1485
Score = 42.7 bits (99), Expect = 0.001
Identities = 107/411 (26%), Positives = 132/411 (32%), Gaps = 83/411 (20%)
Query: 148 VPVLPSRK-RSGKGCPFGKPG-SGAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGG-S 204
VP LP R G G PG GA G +R + GK G Q RG G G +
Sbjct: 800 VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK-PGPRGQRGPTGPRGSRGARGPT 858
Query: 205 GREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHW 264
G+ G G G G PG PGE+ + G P G G+ L
Sbjct: 859 GKPG------PKGTSGGD--GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPG 910
Query: 265 KFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGV--QQGPDVRFLLVEHWGTTEVMSVGS 322
+ G G+ G GGV QGP T + G
Sbjct: 911 QRGETGFQGK---------------TGPPGPGGVVGPQGPTGE--------TGPIGERGH 947
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGP-------------------EAARPCARGPPSQEPG 363
P P P Q P + G G P E P A+G P + G
Sbjct: 948 PGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGG 1007
Query: 364 PPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARR- 422
P P P P R S G A P PG P P EK + +
Sbjct: 1008 EGPQGP----PGP---VGSPGER-GSAGTAG--PIGLPGRPGPQGPPGPAGEKGAPGEKG 1057
Query: 423 -RLPEPRQLHLQPVGANSVERAARRRRTRPEPG----PARRGARAE-----PPGPPTLQD 472
+ P R PVG A + G P ++G++ + PPGPP LQ
Sbjct: 1058 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG 1117
Query: 473 PPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG--GLIGSDSLP 521
P +G+ GE G R G G + G G G IG LP
Sbjct: 1118 P----VGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1164
Score = 38.1 bits (87), Expect = 0.023
Identities = 68/240 (28%), Positives = 85/240 (35%), Gaps = 44/240 (18%)
Query: 293 EFLGGVQQGPDVRFLLVE-HWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAAR 351
EF GV D+ + H E G P + GPP P GP
Sbjct: 361 EFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP---- 416
Query: 352 PCARGP--PSQEPGPPRPWPCALRPRPRLRAA--LPSRRLFSRGAAQQLPCCYKLHPGRH 407
P +GP P +PG P RP L A LP G LP Y G
Sbjct: 417 PGLQGPTGPPGDPGDRGP-----PGRPGLPGADGLPG----PPGTMLMLPFRYG-GDGSK 466
Query: 408 VPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAE---- 463
P +E ++A+ L + R P G + R P GP GA+ E
Sbjct: 467 GPTISAQE--AQAQAILQQARIALRGPPGPMGLTG-----RPGPVGGPGSSGAKGESGDP 519
Query: 464 -PPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARS-PGDVLGSGGGLIGSDSLP 521
P GP +Q PP P+G+ G+R GA G R PG+ G G D LP
Sbjct: 520 GPQGPRGVQGPPG----------PTGKPGKRGRPGADGGRGMPGEPGAKGDR--GFDGLP 567
Score = 32.7 bits (73), Expect = 0.95
Identities = 115/471 (24%), Positives = 156/471 (33%), Gaps = 93/471 (19%)
Query: 154 RKRSGKGCPFGKPGSGAAGPCQSRELLG-KGSGGLSQELQGSERGLPG-GGGSGREGRLL 211
R G+ P G PG AGP R LLG +G+ G + G+ G G G +G +
Sbjct: 594 RGEDGEIGPRGLPGE--AGP---RGLLGPRGTPGAP-----GQPGMAGVDGPPGPKGNMG 643
Query: 212 VQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSL 271
Q + G PG+ G PG + L + G P G G+ LA G
Sbjct: 644 PQGEPGP-----PGQQGNPGPQGLPGPQGPIG---PPGEKGPQGKPGLA------GLPGA 689
Query: 272 DGEWWETKKEFLWEEERGIGTE-------FLG--GVQQGPDVRFLLVEHWGTTEVMSVGS 322
DG KE E+ +G + G GV+ VR L E G
Sbjct: 690 DGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGL---KGSKGEKGEDGF 746
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAAR-PCARGPPSQEPGPPRPWPCALRPRPRLRAA 381
P + + G G PRG + P R P+ +PGP + + +
Sbjct: 747 PGFKGDMGLKGDRGEVGQIG-PRGEDGPEGPKGRAGPTGDPGPSG------QAGEKGKLG 799
Query: 382 LPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVE 441
+P + + + PG + EK + P PR P G
Sbjct: 800 VPGLPGYPGRQGPKGSTGFPGFPGAN------GEKGARGVAGKPGPRGQR-GPTGPRGSR 852
Query: 442 RAARRRRTRPEPGPARRGARAEPPGPPTLQDP--PASHLGSSPAQAPSGEAGRRAGGGAV 499
A R +PGP PPGPP + P P +G + P G G+ G
Sbjct: 853 GA---RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHP 909
Query: 500 GAR------------SPGDVLGSGG-----------------GLIGSDSLPPADPLRLSH 530
G R PG V+G G G G LP A +
Sbjct: 910 GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAK 969
Query: 531 PEPGVVPFQNLRSQRDLRN-PSHQRKPGVHVTSSVQPGFQGRGLCFQGEPG 580
+PG LR P + PG + PG +G G QG PG
Sbjct: 970 GDPGPQGISGKDGPAGLRGFPGERGLPG----AQGAPGLKG-GEGPQGPPG 1015
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 52.0 bits (123), Expect = 2e-06
Identities = 104/401 (25%), Positives = 135/401 (33%), Gaps = 70/401 (17%)
Query: 162 PFGKPGS-GAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGG-SGREGRLLVQQQLGVD 219
P G PG G+AG L G+ G E+G PG G G GR VQ +G+
Sbjct: 1055 PVGSPGERGSAGTAGPIGLPGR-PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP 1113
Query: 220 TGSLP-GKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWET 278
+ P G PG G+K + G + G + G L G DGE
Sbjct: 1114 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPR 1173
Query: 279 KKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEP-----VSQA 333
++ ++ ++ G G GP + G P P E V
Sbjct: 1174 GQQGMFGQKGDEGARGFPG-PPGP--------------IGLQGLPGPPGEKGENGDVGPM 1218
Query: 334 GPPSPGHAGRPRGPEAARPCARGPPSQ--------EPGPPRPWPCALRPRPRLRAAL--P 383
GPP P P+GP A +GPP E G P A P P A + P
Sbjct: 1219 GPPGPPGPRGPQGPNGA-DGPQGPPGSVGSVGGVGEKGEPGE---AGNPGPPGEAGVGGP 1274
Query: 384 SRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLP-------EPRQLHLQPVG 436
+G A P PG P K + P EP P G
Sbjct: 1275 KGERGEKGEAG--PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP-----GPAG 1327
Query: 437 ANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
+ V +PGP A PPGPP + PP G++ A+ GE G +
Sbjct: 1328 QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP----GAAGAEGRQGEKGAKGEA 1383
Query: 497 GA---------VGARSPGDVLGSGG-----GLIGSDSLPPA 523
GA VG + P G G G +G LP A
Sbjct: 1384 GAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1424
Score = 47.0 bits (110), Expect = 5e-05
Identities = 124/467 (26%), Positives = 156/467 (33%), Gaps = 113/467 (24%)
Query: 156 RSGKGCPFGKPG----SGAAGPCQSRELLG----KGSGGLSQE--------LQGSERGLP 199
R G P G PG +G+ G + +G KGS G E LQG G P
Sbjct: 1103 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV-GAP 1161
Query: 200 G-GGGSGREGRLLVQQQLGV--DTGS--LPGKPGGPGEKSL----AQKRQN--------- 241
G GG G G Q G D G+ PG PG G + L +K +N
Sbjct: 1162 GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPP 1221
Query: 242 --TGVRVPSGAHVASGQKSLAWEHWKFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGVQ 299
G R P G + A G + G GE E E G+G
Sbjct: 1222 GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP-PGEAGVG-------- 1272
Query: 300 QGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPP-------SPGHAGRPRGPEAARP 352
GP G P AA P GPP +PG G P P P
Sbjct: 1273 -GPK---------GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP--GPP 1320
Query: 353 CARGPPSQE--------------PGPPRPWPCALRPRPRLRAALPSR-----RLFSRGAA 393
GP Q+ PGPP P A P P + P R +GA
Sbjct: 1321 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1380
Query: 394 QQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEP 453
+ + PG+ P+ P A + PE + PVG + AA + P
Sbjct: 1381 GEAGA--EGPPGKTGPVGP----QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGP---P 1431
Query: 454 GPARRGARAEPPGPPTLQDPPAS-----HLGSSPAQAPSGEAGRRAGGGAVGARSPGDVL 508
GP PPG P L+ P S H G P GE G + G G +
Sbjct: 1432 GPMG------PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAK 1485
Query: 509 GSGGGLIGSDSLP-PADPLRLSHPEPGVVPFQNLRSQRDLRNPSHQR 554
G GG +P PA PL P PG+ Q + + P+ Q+
Sbjct: 1486 GDGG-------IPGPAGPLGPPGP-PGLPGPQGPKGNKGSTGPAGQK 1524
Score = 42.7 bits (99), Expect = 0.001
Identities = 107/411 (26%), Positives = 132/411 (32%), Gaps = 83/411 (20%)
Query: 148 VPVLPSRK-RSGKGCPFGKPG-SGAAGPCQSRELLGKGSGGLSQELQGSERGLPGGGG-S 204
VP LP R G G PG GA G +R + GK G Q RG G G +
Sbjct: 839 VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK-PGPRGQRGPTGPRGSRGARGPT 897
Query: 205 GREGRLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHW 264
G+ G G G G PG PGE+ + G P G G+ L
Sbjct: 898 GKPG------PKGTSGGD--GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPG 949
Query: 265 KFGAGSLDGEWWETKKEFLWEEERGIGTEFLGGV--QQGPDVRFLLVEHWGTTEVMSVGS 322
+ G G+ G GGV QGP T + G
Sbjct: 950 QRGETGFQGK---------------TGPPGPGGVVGPQGPTGE--------TGPIGERGH 986
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGP-------------------EAARPCARGPPSQEPG 363
P P P Q P + G G P E P A+G P + G
Sbjct: 987 PGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGG 1046
Query: 364 PPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARR- 422
P P P P R S G A P PG P P EK + +
Sbjct: 1047 EGPQGP----PGP---VGSPGER-GSAGTAG--PIGLPGRPGPQGPPGPAGEKGAPGEKG 1096
Query: 423 -RLPEPRQLHLQPVGANSVERAARRRRTRPEPG----PARRGARAE-----PPGPPTLQD 472
+ P R PVG A + G P ++G++ + PPGPP LQ
Sbjct: 1097 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG 1156
Query: 473 PPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGG--GLIGSDSLP 521
P +G+ GE G R G G + G G G IG LP
Sbjct: 1157 P----VGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1203
Score = 38.1 bits (87), Expect = 0.023
Identities = 68/240 (28%), Positives = 85/240 (35%), Gaps = 44/240 (18%)
Query: 293 EFLGGVQQGPDVRFLLVE-HWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAAR 351
EF GV D+ + H E G P + GPP P GP
Sbjct: 400 EFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP---- 455
Query: 352 PCARGP--PSQEPGPPRPWPCALRPRPRLRAA--LPSRRLFSRGAAQQLPCCYKLHPGRH 407
P +GP P +PG P RP L A LP G LP Y G
Sbjct: 456 PGLQGPTGPPGDPGDRGP-----PGRPGLPGADGLPG----PPGTMLMLPFRYG-GDGSK 505
Query: 408 VPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAE---- 463
P +E ++A+ L + R P G + R P GP GA+ E
Sbjct: 506 GPTISAQE--AQAQAILQQARIALRGPPGPMGLTG-----RPGPVGGPGSSGAKGESGDP 558
Query: 464 -PPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARS-PGDVLGSGGGLIGSDSLP 521
P GP +Q PP P+G+ G+R GA G R PG+ G G D LP
Sbjct: 559 GPQGPRGVQGPPG----------PTGKPGKRGRPGADGGRGMPGEPGAKGDR--GFDGLP 606
Score = 32.7 bits (73), Expect = 0.95
Identities = 115/471 (24%), Positives = 156/471 (33%), Gaps = 93/471 (19%)
Query: 154 RKRSGKGCPFGKPGSGAAGPCQSRELLG-KGSGGLSQELQGSERGLPG-GGGSGREGRLL 211
R G+ P G PG AGP R LLG +G+ G + G+ G G G +G +
Sbjct: 633 RGEDGEIGPRGLPGE--AGP---RGLLGPRGTPGAP-----GQPGMAGVDGPPGPKGNMG 682
Query: 212 VQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVRVPSGAHVASGQKSLAWEHWKFGAGSL 271
Q + G PG+ G PG + L + G P G G+ LA G
Sbjct: 683 PQGEPGP-----PGQQGNPGPQGLPGPQGPIG---PPGEKGPQGKPGLA------GLPGA 728
Query: 272 DGEWWETKKEFLWEEERGIGTE-------FLG--GVQQGPDVRFLLVEHWGTTEVMSVGS 322
DG KE E+ +G + G GV+ VR L E G
Sbjct: 729 DGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGL---KGSKGEKGEDGF 785
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAAR-PCARGPPSQEPGPPRPWPCALRPRPRLRAA 381
P + + G G PRG + P R P+ +PGP + + +
Sbjct: 786 PGFKGDMGLKGDRGEVGQIG-PRGEDGPEGPKGRAGPTGDPGPSG------QAGEKGKLG 838
Query: 382 LPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVE 441
+P + + + PG + EK + P PR P G
Sbjct: 839 VPGLPGYPGRQGPKGSTGFPGFPGAN------GEKGARGVAGKPGPRGQR-GPTGPRGSR 891
Query: 442 RAARRRRTRPEPGPARRGARAEPPGPPTLQDP--PASHLGSSPAQAPSGEAGRRAGGGAV 499
A R +PGP PPGPP + P P +G + P G G+ G
Sbjct: 892 GA---RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHP 948
Query: 500 GAR------------SPGDVLGSGG-----------------GLIGSDSLPPADPLRLSH 530
G R PG V+G G G G LP A +
Sbjct: 949 GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAK 1008
Query: 531 PEPGVVPFQNLRSQRDLRN-PSHQRKPGVHVTSSVQPGFQGRGLCFQGEPG 580
+PG LR P + PG + PG +G G QG PG
Sbjct: 1009 GDPGPQGISGKDGPAGLRGFPGERGLPG----AQGAPGLKG-GEGPQGPPG 1054
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 51.2 bits (121), Expect = 3e-06
Identities = 65/221 (29%), Positives = 83/221 (37%), Gaps = 29/221 (13%)
Query: 297 GVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARG 356
GV + P R + E WG+ + S AA S + PP PG P A R
Sbjct: 15 GVAESP-ARPRVNEQWGSRAHPNPRSASSAAAAASSSFPP-PGFIHPPSSRAAVHSRLRA 72
Query: 357 PPSQEPGPPRPWPCALRPRPRLRAALPSRRLFSRGAA---QQLPCC----YKLHPGRHVP 409
P+ PR P L P AL RL + AA Q+ ++ PG P
Sbjct: 73 APA---AAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPP 129
Query: 410 LRP-FKEKHSEARRRLPEPRQLHLQPVGANSVERAARRRRTRPEPGPARR---GARAEPP 465
L+P + H+ R +PE L P + RA R R P PAR G P
Sbjct: 130 LQPRSRHPHTRYPRAVPEATPLRPPP---GTRPRAKSRPGCRSSPFPARSRTPGEAGPPR 186
Query: 466 GPPTLQDP-PASHLGSSPA---------QAPSGEAGRRAGG 496
G P + P P H SPA +P G+RA G
Sbjct: 187 GDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAG 227
Score = 30.8 bits (68), Expect = 3.6
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWP-------CALRPR 375
P P P +++ PG P + P GPP +P P P P ALR
Sbjct: 153 PPPGTRPRAKS---RPGCRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRET 209
Query: 376 PRLRAALPSRRLFSRGAAQ 394
P L P RR R A +
Sbjct: 210 PSLSPPSPGRRNGKRAAGK 228
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 50.1 bits (118), Expect = 6e-06
Identities = 72/249 (28%), Positives = 86/249 (34%), Gaps = 39/249 (15%)
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPG------------PPRPWPC 370
P AA P A P S G +GRPRG A RG + P P W
Sbjct: 275 PSAAARPCGAALPRS-GFSGRPRGRGGAA-AGRGSRGEHPACGVGLARGTAPQPASTW-- 330
Query: 371 ALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRL--PEPR 428
AL RPR SR RG A H R H+ R+ P PR
Sbjct: 331 ALAARPRAGGTWTSRFEAQRGCA---------HQDGQRRTRDGAGNHASEPARVWSPPPR 381
Query: 429 QLHLQPVGANSVERAARRRRTRPEP---GPARRGARAEPPGPPTLQDPPASHLGSSPAQA 485
+ + + S++ +RR P GPAR G A P G PT P A G
Sbjct: 382 RQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPT--PPHARPTGRRQDPE 439
Query: 486 PSGEAGRRAGGGAVGARSPGDVLG-----SGGGLIGSDSLPPADPLRLSHPEPGVVPFQN 540
P A R GG A G G GG + LR + P P +
Sbjct: 440 PGPRAPR--GGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGS 497
Query: 541 LRSQRDLRN 549
RS R LR+
Sbjct: 498 SRSVRLLRS 506
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 50.1 bits (118), Expect = 6e-06
Identities = 72/249 (28%), Positives = 86/249 (34%), Gaps = 39/249 (15%)
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPG------------PPRPWPC 370
P AA P A P S G +GRPRG A RG + P P W
Sbjct: 275 PSAAARPCGAALPRS-GFSGRPRGRGGAA-AGRGSRGEHPACGVGLARGTAPQPASTW-- 330
Query: 371 ALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRL--PEPR 428
AL RPR SR RG A H R H+ R+ P PR
Sbjct: 331 ALAARPRAGGTWTSRFEAQRGCA---------HQDGQRRTRDGAGNHASEPARVWSPPPR 381
Query: 429 QLHLQPVGANSVERAARRRRTRPEP---GPARRGARAEPPGPPTLQDPPASHLGSSPAQA 485
+ + + S++ +RR P GPAR G A P G PT P A G
Sbjct: 382 RQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPT--PPHARPTGRRQDPE 439
Query: 486 PSGEAGRRAGGGAVGARSPGDVLG-----SGGGLIGSDSLPPADPLRLSHPEPGVVPFQN 540
P A R GG A G G GG + LR + P P +
Sbjct: 440 PGPRAPR--GGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGS 497
Query: 541 LRSQRDLRN 549
RS R LR+
Sbjct: 498 SRSVRLLRS 506
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 50.1 bits (118), Expect = 6e-06
Identities = 78/289 (26%), Positives = 99/289 (34%), Gaps = 53/289 (18%)
Query: 277 ETKKEFLWEEERGIGTEFLGGVQQGPDVRFLLVEHWGTTEVMSVGSPCPAAEPVSQAGPP 336
E KKE L G LG V L T +V P SQ P
Sbjct: 2286 EVKKEELGASSPSYGPPNLGFVDSPSSGTHLGGLELKTPDVFKA----PLTPRASQVEPQ 2341
Query: 337 SPGHAGRPRGPEAARPCARGPPS---------------QEPGPPRPWPCALRPRPRLRAA 381
SPG RP+ P A+ A PPS Q P PRP P P P A
Sbjct: 2342 SPGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQP----PPPESCCA 2397
Query: 382 LPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVE 441
LP R L S ++P + PL P + A P P Q +
Sbjct: 2398 LPPRSLPS-DPFSRVPASPQSQSSSQSPLTP---RPLSAEAFCPSPVTPRFQ--SPDPYS 2451
Query: 442 RAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASH----LGSSPAQAPSGEAGR----- 492
R R ++R P + R +PP + +H G PA P+G AG
Sbjct: 2452 RPPSRPQSRDPFAPLHKPPRPQPP-EVAFKAGSLAHTSLGAGGFPAALPAGPAGELHAKV 2510
Query: 493 RAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLRLSHP----EPGVVP 537
+G RSPG G +G+ S P+R + P EP + P
Sbjct: 2511 PSGQPPNFVRSPGT-----GAFVGTPS-----PMRFTFPQAVGEPSLKP 2549
Score = 36.6 bits (83), Expect = 0.066
Identities = 47/177 (26%), Positives = 57/177 (32%), Gaps = 26/177 (14%)
Query: 322 SPCPAAEPVS---QAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRL 378
SP P A P+S + P SP P P PP + P P P + P P
Sbjct: 537 SPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPE- 595
Query: 379 RAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGAN 438
+ RLF L P PL P EA R P P + P
Sbjct: 596 -----ASRLFPPFEESPLS-----PPPEESPLSP----PPEASRLSPPPEDSPMSPPPEE 641
Query: 439 S-------VERAARRR-RTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPS 487
S V R + +R P P P PT P AS L P +P+
Sbjct: 642 SPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPT 698
Score = 36.2 bits (82), Expect = 0.086
Identities = 46/179 (25%), Positives = 68/179 (37%), Gaps = 30/179 (16%)
Query: 319 SVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQE-PGPPRPWPCALRPRPR 377
++GSP PAA P G P+ P G + PP+ PGP P L+ P+
Sbjct: 2112 ALGSPPPAAAPTIFIGSPTT-----PAGLSTSADGFLKPPAGSVPGPDSPGELFLKLPPQ 2166
Query: 378 LRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQP--V 435
+ A +PS+ F A L + P + P P P QP +
Sbjct: 2167 VPAQVPSQDPFGLAPAYPLEPRFPTAPPTYPP--------------YPSPTGAPAQPPML 2212
Query: 436 GANSVERAAR--RRRTRPEPGPARRGARAEP---PGPPTLQD---PPASHLGSSPAQAP 486
GA+S A + T P P + + +P P P+L + P + +G A P
Sbjct: 2213 GASSRPGAGQPGEFHTTPPGTPRHQPSTPDPFLKPRCPSLDNLAVPESPGVGGGKASEP 2271
Score = 35.4 bits (80), Expect = 0.15
Identities = 45/162 (27%), Positives = 57/162 (35%), Gaps = 36/162 (22%)
Query: 325 PAAEPVSQAGPPS-PGHAGRPR---GPEAARPCARGPPSQEPGPPRPWPCALRPRP---R 377
P PV PPS P RP P + P P PG P+P L P P
Sbjct: 4300 PVLGPVHPTPPPSSPQEPKRPSQLPSPSSQLPTEAQLPPTHPGTPKPQGPTLEPPPGRVS 4359
Query: 378 LRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQL---HLQP 434
AA + LFS+G L P+ + A + PE L HL
Sbjct: 4360 PAAAQLADTLFSKG------------------LGPWDPPDNLAETQKPEQSSLVPGHLDQ 4401
Query: 435 VGANSVERAAR---RRRTRPEP-----GPARRGARAEPPGPP 468
V V A++ ++ R EP +R A EP G P
Sbjct: 4402 VNGQVVPEASQLSIKQEPREEPCALGAQSVKREANGEPIGAP 4443
Score = 34.3 bits (77), Expect = 0.33
Identities = 43/181 (23%), Positives = 55/181 (30%), Gaps = 24/181 (13%)
Query: 322 SPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPP--SQEPGP---PRPWPCALRPRP 376
SP P P S PP P P P + GP PRP L PRP
Sbjct: 699 SPPPEDSPASP--PPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPHLSPRPEEPHLSPRP 756
Query: 377 RLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQP-V 435
P + PC VP P +E P+P +LHL P
Sbjct: 757 EEPHLSPQAEEPHLSPQPEEPCLCA------VPEEPHLSPQAEGPHLSPQPEELHLSPQT 810
Query: 436 GANSVERAARRRRTRPEPGPARRGARAEPPG----------PPTLQDPPASHLGSSPAQA 485
+ P+P + ++E P P L+ PP S P +
Sbjct: 811 EEPHLSPVPEEPCLSPQPEESHLSPQSEEPCLSPRPEESHLSPELEKPPLSPRPEKPPEE 870
Query: 486 P 486
P
Sbjct: 871 P 871
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 172 GPCQSRELLGKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGGPG 231
GP R+ LG G+S L G +PG G + L Q G+ G P GP
Sbjct: 2842 GPELGRQALGSPLAGISTRLPGPGEPVPGPAGPAQFIELRHNVQKGLGPGGTPFPGQGPP 2901
Query: 232 EK 233
++
Sbjct: 2902 QR 2903
Score = 30.8 bits (68), Expect = 3.6
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 316 EVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCA---- 371
+V + +P P EP P +P A P P P P EP P P P A
Sbjct: 4902 DVRQLSAP-PPEEPSPPPSPLAPSPASPPTEPLVELPTE---PLAEPPVPSPLPLASSPE 4957
Query: 372 -LRPRPRLR 379
RP+PR R
Sbjct: 4958 SARPKPRAR 4966
Score = 30.4 bits (67), Expect = 4.7
Identities = 46/170 (27%), Positives = 59/170 (34%), Gaps = 26/170 (15%)
Query: 317 VMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRP 376
V+S SP P P+S PP P PEA+R PP P P P P P
Sbjct: 658 VVSRLSPPPEESPLSP--PPEESPTSPP--PEASR--LSPPPEDSPTSPPPEDSPASPPP 711
Query: 377 R-LRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPV 435
+LP ++ C + G H+ RP +E H P P + HL P
Sbjct: 712 EDSLMSLPLEESPLLPLPEEPQLCPR-SEGPHLSPRP-EEPHLS-----PRPEEPHLSP- 763
Query: 436 GANSVERAARRRRTRPEP-GPARRGARAEPPGPPTLQDPPASHLGSSPAQ 484
A P+P P EP P + P HL P +
Sbjct: 764 -------QAEEPHLSPQPEEPCLCAVPEEPHLSPQAEGP---HLSPQPEE 803
Score = 30.0 bits (66), Expect = 6.2
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 170 AAGPCQSRELLGKGSGGLSQELQGSERGLPGGGGSGREGRLLVQQQLGVDTGSLPGKPGG 229
A P QS LL K G L L G P G G+ G L +L +LPG+PGG
Sbjct: 3618 ALSPSQSPRLLTKLPGQL---LPGHGLQPPQGPPGGQAGGL----RLTPGGMALPGQPGG 3670
Query: 230 PG-EKSLAQKRQ 240
P +LAQ++Q
Sbjct: 3671 PFLNTALAQQQQ 3682
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 48.9 bits (115), Expect = 1e-05
Identities = 55/202 (27%), Positives = 70/202 (34%), Gaps = 38/202 (18%)
Query: 313 GTTEVMSVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCAL 372
G + GSP P+ P +AG G G + G PS+ PGP P
Sbjct: 475 GAQTLALAGSPAPSGHP--KAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGPAGD 532
Query: 373 RPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHL 432
P A PS PG P P ++ +E+ P PR
Sbjct: 533 EP-----AESPSET-----------------PGPR-PAGPAGDEPAESPSETPGPR---- 565
Query: 433 QPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDP---PASHLGSSPAQAPSGE 489
P G E A T PGP+ G + P + P PA G PA++PS
Sbjct: 566 -PAGPAGDEPAESPSET---PGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSET 621
Query: 490 AGRRAGG--GAVGARSPGDVLG 509
G R G G A SP + G
Sbjct: 622 PGPRPAGPAGDEPAESPSETPG 643
Score = 34.3 bits (77), Expect = 0.33
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 448 RTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG--GAVGARSPG 505
RT P+ G G+ +E PGP PA G PA++PS G R G G A SP
Sbjct: 507 RTGPKEGTP--GSPSETPGPS-----PAGPAGDEPAESPSETPGPRPAGPAGDEPAESPS 559
Query: 506 DVLG-SGGGLIGSDSLPPADPLRLSHPEP 533
+ G G G + P P P P
Sbjct: 560 ETPGPRPAGPAGDE--PAESPSETPGPSP 586
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 48.5 bits (114), Expect = 2e-05
Identities = 67/248 (27%), Positives = 93/248 (37%), Gaps = 34/248 (13%)
Query: 323 PCPAAEPVSQAGPPSPGHAGRPRGPE-AARP--------CARGPPSQEPGPPR-PWPCAL 372
P P Q GPP PG + +GP RP GPP+ P P R P P +
Sbjct: 455 PPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSA 514
Query: 373 RPRPRLRAALPSRRLFSRGAAQQLPCC--YKLHPGRHVPLRPFKEKHSEARRRLPEPRQL 430
+P +AA P++ Q P P P P ++ + + +
Sbjct: 515 PQQPASQAAPPTQ----GQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVS 570
Query: 431 HLQPVGANSVERAARRRRTRPE--PGPA---RRGARAEP---PGPPTLQDP------PAS 476
P A+ ++R+ P+ PGPA R+ ++A P GPPT Q P PA
Sbjct: 571 GPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAG 630
Query: 477 HLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPLR--LSHPEPG 534
AQ PS + A A G P L L + +LP P R LS E
Sbjct: 631 RPKPQLAQKPSQDVPPPATAAAGG--PPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVK 688
Query: 535 VVPFQNLR 542
++LR
Sbjct: 689 AETIRSLR 696
Score = 47.4 bits (111), Expect = 4e-05
Identities = 64/249 (25%), Positives = 86/249 (34%), Gaps = 26/249 (10%)
Query: 331 SQAGPPSPGHA--GRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALP---SR 385
S PSPG GR + A P A+ P + GPP+P P R P L+ P +
Sbjct: 432 SHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQ 491
Query: 386 RLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGANSVERAAR 445
L G P +L P +P + + + + R + P GA R
Sbjct: 492 HLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGP-GAPPAARPPA 550
Query: 446 RRRTRPEPGP--ARRGARAEPPGPPTLQD-PPASHLGSSPAQAPSGEAG---RRAGGGAV 499
+ + GP A R P PP PP P Q P G AG + + G V
Sbjct: 551 SPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPV 610
Query: 500 GARSPGDV---LGSGGGLIG-----------SDSLPPADPLRLSHPEPGVVPFQNLRSQR 545
P SG G G D PPA P P + Q+L +
Sbjct: 611 PRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAF 670
Query: 546 DLRNPSHQR 554
+L P+ R
Sbjct: 671 NLPEPAPPR 679
Score = 45.8 bits (107), Expect = 1e-04
Identities = 50/187 (26%), Positives = 67/187 (35%), Gaps = 31/187 (16%)
Query: 321 GSPCPAA---------EPVSQAGPPSPGH-------AGRPRGPEAARPCARGPPSQEPGP 364
GSP P +P SQA PP+ G AG P P AARP A P ++ GP
Sbjct: 501 GSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGP 560
Query: 365 PRP--WPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARR 422
P+ P P + P +G Q+ PG P R + R
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPGGQQRQGPPQK-------PPGPAGPTRQASQAGPVPRT 613
Query: 423 RLP---EPRQLHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLG 479
P +PR P G + A + + P P A G PP P + ++
Sbjct: 614 GPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGG---PPHPQLNKSQSLTNAF 670
Query: 480 SSPAQAP 486
+ P AP
Sbjct: 671 NLPEPAP 677
Score = 30.8 bits (68), Expect = 3.6
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 23/123 (18%)
Query: 426 EPRQLHLQPVGANSVERAARRRRTR------------PEPG--PARRGARAEPPGPPTLQ 471
E +QL ++ V N + +A R+R R P PG P R +P GPP Q
Sbjct: 401 EDKQLIVELV-VNKMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQ 459
Query: 472 DPPASHLGSSPAQAPSGEAGRRAGGGAVGARSP--GDVLGSGGGLIGSDSLPPADPLRLS 529
PP G P P G + G + R P G SG G LP P S
Sbjct: 460 RPPPQ--GGPPQPGP----GPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTS 513
Query: 530 HPE 532
P+
Sbjct: 514 APQ 516
Score = 29.6 bits (65), Expect = 8.0
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 523 ADPLRLSH---PEPGVVPFQNLRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGLCFQGEP 579
A P R SH P PG +P SQ+ P+ QR P PG Q +G Q P
Sbjct: 426 ASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRP 485
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,217,868
Number of Sequences: 37866
Number of extensions: 2235816
Number of successful extensions: 23892
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 1310
Number of HSP's that attempted gapping in prelim test: 14823
Number of HSP's gapped (non-prelim): 7800
length of query: 585
length of database: 18,247,518
effective HSP length: 108
effective length of query: 477
effective length of database: 14,157,990
effective search space: 6753361230
effective search space used: 6753361230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.