Guide to the Human Genome
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Name: LOC100288606 Sequence: fasta or formatted (647aa) NCBI GI: 239742799
Description:

PREDICTED: hypothetical protein XP_002342652

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         82           3
 C cysteine            2.5         16           1
 D aspartate           2.2         14           1
 E glutamate           3.4         22           2
 F phenylalanine       2.8         18           2
 G glycine            12.8         83           3
 H histidine           2.2         14           1
 I isoleucine          1.4          9           1
 K lysine              1.5         10           2
 L leucine             9.4         61           5
 M methionine          0.5          3           1
 N asparagine          1.5         10           2
 P proline            11.4         74           3
 Q glutamine           3.4         22           1
 R arginine           14.4         93           4
 S serine              8.5         55           4
 T threonine           2.5         16           2
 V valine              4.5         29           2
 W tryptophan          2.0         13           2
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342652 
LOC100290372          0.999   PREDICTED: hypothetical protein XP_002346788 
COL1A2                0.027   alpha 2 type I collagen 
AGAP2                 0.027   centaurin, gamma 1 isoform PIKE-L 
C6orf136              0.027   hypothetical protein LOC221545 isoform 3 
COL2A1                0.025   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.025   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FLJ37078              0.024   hypothetical protein LOC222183 
LOC100129129          0.022   PREDICTED: hypothetical protein 
LOC100290946          0.022   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.022   PREDICTED: hypothetical protein XP_002344246 
COL1A1                0.022   alpha 1 type I collagen preproprotein 
LOC100288573          0.022   PREDICTED: hypothetical protein XP_002343799 
DACT3                 0.021   thymus expressed gene 3-like 
COL3A1                0.021   collagen type III alpha 1 preproprotein 
MLL4                  0.021   myeloid/lymphoid or mixed-lineage leukemia 4 
COL13A1               0.021   alpha 1 type XIII collagen isoform 7 
COL13A1               0.020   alpha 1 type XIII collagen isoform 20 
COL13A1               0.020   alpha 1 type XIII collagen isoform 18 
COL13A1               0.020   alpha 1 type XIII collagen isoform 17 
COL13A1               0.020   alpha 1 type XIII collagen isoform 16 
COL13A1               0.020   alpha 1 type XIII collagen isoform 14 
COL13A1               0.020   alpha 1 type XIII collagen isoform 10 
COL13A1               0.020   alpha 1 type XIII collagen isoform 9 
COL13A1               0.020   alpha 1 type XIII collagen isoform 5 
COL13A1               0.020   alpha 1 type XIII collagen isoform 4 
COL13A1               0.020   alpha 1 type XIII collagen isoform 3 
COL13A1               0.020   alpha 1 type XIII collagen isoform 2 
COL13A1               0.020   alpha 1 type XIII collagen isoform 1 
LOC100292370          0.020   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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