Guide to the Human Genome
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Name: LOC100290274 Sequence: fasta or formatted (585aa) NCBI GI: 239749293
Description:

PREDICTED: hypothetical protein XP_002346984

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         40           2
 C cysteine            2.1         12           2
 D aspartate           2.1         12           1
 E glutamate           4.8         28           3
 F phenylalanine       4.1         24           2
 G glycine            12.8         75           4
 H histidine           2.9         17           1
 I isoleucine          2.1         12           1
 K lysine              2.9         17           2
 L leucine             9.4         55           2
 M methionine          0.5          3           1
 N asparagine          2.1         12           2
 P proline            12.0         70           2
 Q glutamine           4.8         28           3
 R arginine            9.4         55           4
 S serine             10.4         61           2
 T threonine           3.4         20           2
 V valine              4.8         28           2
 W tryptophan          1.9         11           2
 Y tyrosine            0.9          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          1.000   PREDICTED: hypothetical protein XP_002342846 
LOC100293191          0.081   PREDICTED: hypothetical protein 
LOC100290214          0.081   PREDICTED: hypothetical protein XP_002346983 
LOC100288576          0.081   PREDICTED: hypothetical protein XP_002342845 
LOC100288576          0.081   PREDICTED: hypothetical protein 
LOC100293166          0.078   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.078   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.078   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.078   PREDICTED: similar to ribosomal protein L36a 
TAF4                  0.028   TBP-associated factor 4 
COL1A1                0.027   alpha 1 type I collagen preproprotein 
SAMD1                 0.026   sterile alpha motif domain containing 1 
COL1A2                0.025   alpha 2 type I collagen 
COL3A1                0.025   collagen type III alpha 1 preproprotein 
COL2A1                0.024   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.024   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A1                0.023   alpha 1 type V collagen preproprotein 
LOC100291624          0.023   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.023   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.023   PREDICTED: hypothetical protein XP_002342583 
COL11A1               0.023   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.023   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.023   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100130360          0.022   PREDICTED: hypothetical protein 
LOC100290372          0.021   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.021   PREDICTED: hypothetical protein XP_002342652 
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
OGFR                  0.020   opioid growth factor receptor 
SYN1                  0.020   synapsin I isoform Ia 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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