Guide to the Human Genome
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Name: LOC100290214 Sequence: fasta or formatted (154aa) NCBI GI: 239749289
Description:

PREDICTED: hypothetical protein XP_002346983

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          9           1
 C cysteine            2.6          4           1
 D aspartate           1.3          2           1
 E glutamate           0.6          1           1
 F phenylalanine       5.8          9           2
 G glycine             7.1         11           2
 H histidine           1.3          2           1
 I isoleucine          0.6          1           1
 K lysine              4.5          7           1
 L leucine             9.1         14           2
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline            14.9         23           2
 Q glutamine           3.9          6           1
 R arginine            4.5          7           1
 S serine             22.1         34           3
 T threonine           6.5         10           2
 V valine              5.2          8           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346983 
LOC100293191          1.000   PREDICTED: hypothetical protein 
LOC100288576          1.000   PREDICTED: hypothetical protein XP_002342845 
LOC100288576          1.000   PREDICTED: hypothetical protein 
LOC100293166          0.403   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.403   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.403   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.403   PREDICTED: similar to ribosomal protein L36a 
LOC100290274          0.334   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.334   PREDICTED: hypothetical protein XP_002342846 
MAML2                 0.055   mastermind-like 2 
MAPK7                 0.052   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.052   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.052   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.052   mitogen-activated protein kinase 7 isoform 2 
POLR2A                0.048   DNA-directed RNA polymerase II A 
GLTSCR1               0.048   glioma tumor suppressor candidate region gene 1 [Ho...
SON                   0.048   SON DNA-binding protein isoform F 
SON                   0.048   SON DNA-binding protein isoform B 
SYNPO2L               0.048   synaptopodin 2-like isoform a 
SYNPO2L               0.048   synaptopodin 2-like isoform b 
TNKS                  0.041   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
PNRC1                 0.041   proline-rich nuclear receptor coactivator 1 
ABI1                  0.041   abl-interactor 1 isoform a 
PRDM2                 0.041   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.041   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.041   retinoblastoma protein-binding zinc finger protein i...
DCX                   0.041   doublecortin isoform c 
DCX                   0.041   doublecortin isoform c 
DCX                   0.041   doublecortin isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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