Guide to the Human Genome
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Name: LOC100288541 Sequence: fasta or formatted (348aa) NCBI GI: 239509069
Description:

PREDICTED: similar to ribosomal protein L36a

Referenced in:

Ribosomes

Other entries for this name:
alt mRNA [348aa] PREDICTED: hypothetical protein XP_002342844
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         38           2
 C cysteine            3.7         13           1
 D aspartate           2.6          9           1
 E glutamate           4.0         14           1
 F phenylalanine       4.0         14           2
 G glycine             7.2         25           2
 H histidine           2.9         10           1
 I isoleucine          2.6          9           1
 K lysine              4.9         17           2
 L leucine             7.8         27           2
 M methionine          1.4          5           1
 N asparagine          0.9          3           1
 P proline             5.5         19           2
 Q glutamine           4.3         15           2
 R arginine            9.2         32           2
 S serine             10.3         36           2
 T threonine           6.6         23           2
 V valine              9.5         33           2
 W tryptophan          0.6          2           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ribosomal protein L36a 
LOC100293166          1.000   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          1.000   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          1.000   PREDICTED: hypothetical protein XP_002342844 
LOC100293191          0.175   PREDICTED: hypothetical protein 
LOC100290214          0.175   PREDICTED: hypothetical protein XP_002346983 
LOC100288576          0.175   PREDICTED: hypothetical protein XP_002342845 
LOC100288576          0.175   PREDICTED: hypothetical protein 
RPL36A                0.157   ribosomal protein L36a 
RPL36AL               0.156   ribosomal protein L36a-like protein 
LOC100290274          0.139   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.139   PREDICTED: hypothetical protein XP_002342846 
LOC100293876          0.102   PREDICTED: similar to ribosomal protein L36a 
LOC100290073          0.102   PREDICTED: hypothetical protein XP_002346832 
LOC100130667          0.051   PREDICTED: hypothetical protein 
LOC100130667          0.051   PREDICTED: hypothetical protein 
LOC100130667          0.051   PREDICTED: hypothetical protein 
LOC100130262          0.028   PREDICTED: hypothetical protein 
LOC100130262          0.028   PREDICTED: hypothetical protein 
LOC100130262          0.028   PREDICTED: hypothetical protein 
LOC100289978          0.024   PREDICTED: hypothetical protein XP_002348035 
LOC100130710          0.015   PREDICTED: hypothetical protein 
LOC100130710          0.015   PREDICTED: hypothetical protein 
LOC284801             0.012   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.012   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.012   PREDICTED: hypothetical protein LOC284801 
LOC100291846          0.010   PREDICTED: hypothetical protein XP_002345270 
LOC100290090          0.010   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.010   PREDICTED: hypothetical protein XP_002343740 
ZNF583                0.009   zinc finger protein 583 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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