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Search of human proteins with 239748653
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748653 PREDICTED: hypothetical protein [Homo sapiens] 600 e-172
gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo ... 600 e-172
gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo ... 593 e-170
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 39 0.007
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 39 0.007
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 38 0.009
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 38 0.009
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 38 0.012
gi|28875797 small protein rich in arginine and glycine [Homo sap... 37 0.016
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 37 0.016
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap... 36 0.035
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 36 0.046
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 36 0.046
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 35 0.060
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 34 0.13
gi|169208488 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 34 0.13
gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens] 34 0.18
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ... 34 0.18
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap... 34 0.18
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap... 34 0.18
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.23
gi|124378039 SEC16 homolog A [Homo sapiens] 33 0.23
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 33 0.23
gi|6912446 potassium voltage-gated channel, subfamily H, member ... 33 0.30
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens] 33 0.30
gi|51242137 transmembrane protein 200B [Homo sapiens] 33 0.30
gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartat... 33 0.39
>gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 600 bits (1547), Expect = e-172
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
Query: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF 120
RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF
Sbjct: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF 120
Query: 121 KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS 180
KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS
Sbjct: 121 KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS 180
Query: 181 GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ 240
GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ
Sbjct: 181 GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ 240
Query: 241 RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 241 RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
>gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo
sapiens]
Length = 295
Score = 600 bits (1547), Expect = e-172
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
Query: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF 120
RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF
Sbjct: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF 120
Query: 121 KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS 180
KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS
Sbjct: 121 KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS 180
Query: 181 GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ 240
GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ
Sbjct: 181 GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ 240
Query: 241 RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 241 RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
>gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo
sapiens]
Length = 297
Score = 593 bits (1530), Expect = e-170
Identities = 294/297 (98%), Positives = 295/297 (99%), Gaps = 2/297 (0%)
Query: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1 MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
Query: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIR--EPKTSPEALRLRLAGLKASP 118
RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIR EPKTSPEALRLRLAGLKASP
Sbjct: 61 RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGLKASP 120
Query: 119 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 178
SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW
Sbjct: 121 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 180
Query: 179 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 238
DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV
Sbjct: 181 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 240
Query: 239 QQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
QQRGGLPVQWS+GPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 241 QQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 297
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 38.5 bits (88), Expect = 0.007
Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 57/234 (24%)
Query: 65 GEGAAAPGMVPAGDSRPLT-----------ALLACNLNPFYLLIREPKTSPEALRLRLAG 113
GE A A G P PL A LA + P ++ + P L G
Sbjct: 455 GEAALATGEGPQARVHPLVDGQQGGALEGLAALATLVGPLARVVPQVVAQPGGA---LEG 511
Query: 114 LKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARR-----------LPLPAR 162
L A +F P R + G WR G RR L L R
Sbjct: 512 LAALGTFVGPLRR---------------SGGGRGWRRDGGGRRQRFLGAGHLRSLSLRGR 556
Query: 163 VAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGG-----PR 217
RG V+ R ++G G A A RLP SP+ L V G P
Sbjct: 557 APGRGLFHVALL-MRQEAGQLREGAVAA---AAAERLPAGSPVAVL----VAGEPSHRPE 608
Query: 218 GRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPR 271
G AG+ G RRG GR+ ++QRG +W G L G GPG R
Sbjct: 609 GLAAGQTGKARRGGGGGRRGLRQRG----RWLVGLGRLGGCLLGLGRRIGPGAR 658
Score = 29.6 bits (65), Expect = 3.3
Identities = 46/167 (27%), Positives = 60/167 (35%), Gaps = 31/167 (18%)
Query: 141 GTPAGSSWRGSPGARRLPLPA------RVAERGGARVSRRGPRWDSGPQTGGQAHAELLA 194
G+P G P R L A R GG R R+ RW G G+ LL
Sbjct: 592 GSPVAVLVAGEPSHRPEGLAAGQTGKARRGGGGGRRGLRQRGRWLVGL---GRLGGCLLG 648
Query: 195 LERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQ-------QRGG---- 243
L RR+ + L + L + L RGLR ++ ++ +RGG
Sbjct: 649 LGRRIGPGARLVLQEQLLAAESLLAAIAAVHQLHRGLRRRQKELRHHGRGRGRRGGRRGR 708
Query: 244 -----LPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARA 285
+P+Q DL L G RG G RG G G RA
Sbjct: 709 AVGLEVPLQVGVAHEDLAGLPGLGGRGRGGGTRG------GGGAVRA 749
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 38.5 bits (88), Expect = 0.007
Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 105 EALRLRL-AGLKASPSFKDPESRFMEPWAPLPL---------LVGEGTPAGSSWRGSPGA 154
E RLR A L+A P+ P + EPW P G+ P+ +SW GS G
Sbjct: 64 EEARLREDAPLRARPAAASPRA---EPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL 120
Query: 155 RRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG 214
PA++ R R S D +T +A RR SP A P ++
Sbjct: 121 AYPARPAQLRRRASVRGSSEE---DEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL 177
Query: 215 GP------RGRRAGRLGSLRRGLRLGRQ 236
GP R RAG G+ R +GR+
Sbjct: 178 GPDPRPGLRATRAGPAGAARARPEVGRR 205
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 38.1 bits (87), Expect = 0.009
Identities = 41/125 (32%), Positives = 49/125 (39%), Gaps = 25/125 (20%)
Query: 111 LAGLKASPSFKDPESRFMEPWAP-LPLLVGE---GTPAGSSWRGSPGARRLPLPARVAER 166
L G+K P F P+ EP P LP GE P G RG PGA P P
Sbjct: 336 LPGIKGEPGFIGPQG---EPGLPGLPGTKGERGEAGPPGRGERGEPGA---PGPKGKQGE 389
Query: 167 GGARVSR-----RGPRWDSGP--------QTGGQAHAELLALERRLPEHSPLRALKPLAV 213
G R + RG + DSG Q G Q E++ L H L+ + L V
Sbjct: 390 SGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNL--HEALQRITTLTV 447
Query: 214 GGPRG 218
GP G
Sbjct: 448 TGPPG 452
Score = 28.5 bits (62), Expect = 7.4
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 14/152 (9%)
Query: 141 GTPAGSSWRGSPGARR-LPLPARVAERGGARV-------SRRGPRWDSGPQTGGQAHAEL 192
G P +G G++ + P E+GG + +G + DSG G +
Sbjct: 470 GIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMP--GPQGPSI 527
Query: 193 LALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGP 252
+ H P + P + GP+G G +G G + ++G + RGP
Sbjct: 528 IGPPGPPGPHGPPGPMGPHGLPGPKGTD-GPMGP--HGPAGPKGERGEKGAMGEPGPRGP 584
Query: 253 RDLCWLRPTAGCNRGPGPRGCAKGSVGRGGAR 284
L G + PGPRG KG +G G +
Sbjct: 585 YGLPGKDGEPGLDGFPGPRG-EKGDLGEKGEK 615
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 38.1 bits (87), Expect = 0.009
Identities = 41/125 (32%), Positives = 49/125 (39%), Gaps = 25/125 (20%)
Query: 111 LAGLKASPSFKDPESRFMEPWAP-LPLLVGE---GTPAGSSWRGSPGARRLPLPARVAER 166
L G+K P F P+ EP P LP GE P G RG PGA P P
Sbjct: 336 LPGIKGEPGFIGPQG---EPGLPGLPGTKGERGEAGPPGRGERGEPGA---PGPKGKQGE 389
Query: 167 GGARVSR-----RGPRWDSGP--------QTGGQAHAELLALERRLPEHSPLRALKPLAV 213
G R + RG + DSG Q G Q E++ L H L+ + L V
Sbjct: 390 SGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNL--HEALQRITTLTV 447
Query: 214 GGPRG 218
GP G
Sbjct: 448 TGPPG 452
Score = 31.2 bits (69), Expect = 1.1
Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 14/160 (8%)
Query: 141 GTPAGSSWRGSPGARR-LPLPARVAERGGARV-------SRRGPRWDSGPQTGGQAHAEL 192
G P +G G++ + P E+GG + +G + DSG G +
Sbjct: 470 GIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMP--GPQGPSI 527
Query: 193 LALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGP 252
+ H P + P + GP+G G +G G + ++G + RGP
Sbjct: 528 IGPPGPPGPHGPPGPMGPHGLPGPKGTD-GPMGP--HGPAGPKGERGEKGAMGEPGPRGP 584
Query: 253 RDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHV 292
L G + PGPRG KG +G G + HV
Sbjct: 585 YGLPGKDGEPGLDGFPGPRG-EKGDLGEKGEKVTSPSQHV 623
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 37.7 bits (86), Expect = 0.012
Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 25/162 (15%)
Query: 143 PAGSSWRGSPGARRLPLPARVAERGGARVSRR--GP------RWDSGPQTGGQAHAELLA 194
P+ S SP AR++ L + RG + R GP RWD P A L+
Sbjct: 49 PSSSQALHSP-ARQVHLVWLLRSRGFREIKERAQGPGASPWGRWDWSPSP---RFAARLS 104
Query: 195 LERRLPEHSPLRALK-----PLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWS 249
P+ R + P GGPRG+ AGR G + R R GR+R + +
Sbjct: 105 TSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLR--RAGRRRARPPPVPRLPAP 162
Query: 250 RGPRDLCWLRPTAGCNRGPG-PRGCAKGSVGRGGARAAPNHT 290
R PR RP P P G G GR P T
Sbjct: 163 RAPR-----RPRGPATPDPSPPAGRPHGPAGRAAPGRRPGCT 199
Score = 31.2 bits (69), Expect = 1.1
Identities = 54/199 (27%), Positives = 67/199 (33%), Gaps = 61/199 (30%)
Query: 97 IREPKTSPEAL-----RLRLAGLKASPSFKDPESRFMEP---------WAPLP-----LL 137
+ +P +S +AL ++ L L S F++ + R P W+P P L
Sbjct: 45 LADPPSSSQALHSPARQVHLVWLLRSRGFREIKERAQGPGASPWGRWDWSPSPRFAARLS 104
Query: 138 VGEGTPAGSSWRGSPGARRLPLP------------ARVAERGGARVSR----------RG 175
P G + R G LP V R G R +R R
Sbjct: 105 TSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLRRAGRRRARPPPVPRLPAPRA 164
Query: 176 PRWDSGPQTGGQAHAELLALERRLPEHSPL--RALKPLAVGGPRGRRAGRLGSLRRGLRL 233
PR GP T P+ SP R P P GRR G LR R
Sbjct: 165 PRRPRGPAT---------------PDPSPPAGRPHGPAGRAAP-GRRPGCTAQLRAPGRR 208
Query: 234 GRQR--VQQRGGLPVQWSR 250
GRQR V GG QW R
Sbjct: 209 GRQRLLVHPGGGGRRQWQR 227
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 37.4 bits (85), Expect = 0.016
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 204 PLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQ-RVQQRGGLPVQWSRGPRDLCWLRPTA 262
P+ AL A+GG RG + G R GLR GR R RGG+ ++ R + P
Sbjct: 91 PIGALARGAIGG-RGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRM 149
Query: 263 GCNRG-------PGPRGCAKGSVGRGG 282
G RG PG G +G++GRGG
Sbjct: 150 GLRRGGVRGRGGPGRGGLGRGAMGRGG 176
Score = 36.2 bits (82), Expect = 0.035
Identities = 40/117 (34%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 141 GTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLP 200
G P G+ RG+ G R LP+ R RGG R GG+A LL L
Sbjct: 89 GRPIGALARGAIGGRGLPIIQRGLPRGGLR--------------GGRATRTLLRGGMSLR 134
Query: 201 EHSPL---RALKP---LAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRG 251
+ L RA+ P L GG RGR G L RG +GR + RG + RG
Sbjct: 135 GQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG-AMGRGGIGGRGRGMIGRGRG 190
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 37.4 bits (85), Expect = 0.016
Identities = 48/185 (25%), Positives = 66/185 (35%), Gaps = 20/185 (10%)
Query: 21 QVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKRRREP-GEGAAAPGMVPAGDS 79
+ L GQ+G A G A L + + S + R+ EP G P + DS
Sbjct: 639 ETKLPGQEGAAA--PGEAGAVCLKKETPQASEKVDPGSCRKAEPLASGKGEPVSLGKADS 696
Query: 80 RPLTALLACNLN---PFYLLIREPKTSPEALRLRLAGLKASPSFKDPESRFMEPWAPLPL 136
P + +L P L +P +S L + G SP +EP A P+
Sbjct: 697 APSRKTESPSLGKVVPLSLEKTKPSSSSRQLDRKALGSARSPEGARGSEGRVEPKAE-PV 755
Query: 137 LVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVS---RRGPRW----------DSGPQ 183
E + G + GA R P P A G R + P W D+G Q
Sbjct: 756 SSTEASSLGQKDLEAAGAERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQ 815
Query: 184 TGGQA 188
G QA
Sbjct: 816 AGAQA 820
>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
sapiens]
Length = 525
Score = 36.2 bits (82), Expect = 0.035
Identities = 43/146 (29%), Positives = 58/146 (39%), Gaps = 16/146 (10%)
Query: 127 FMEP-W-APL-PLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQ 183
F++P W AP+ PL G P + G+P +LP + + + + R G W P
Sbjct: 11 FLQPLWVAPVKPLQPGAEVPVVWAQEGAPA--QLPCSPTIPLQDLSLLRRAGVTWQHQPD 68
Query: 184 TGGQAHAELLALERRLPEHSPLRALKPLAVG--GPRGRRAGRLGSLRRGLRLGRQRVQQR 241
+G A A P H P A GPR RR L GLR GR +Q R
Sbjct: 69 SGPPAAA---------PGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPR 119
Query: 242 GGLPVQWSRGPRDLCWLRPTAGCNRG 267
L + + WLRP + G
Sbjct: 120 VQLDERGRQRGDFSLWLRPARRADAG 145
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 35.8 bits (81), Expect = 0.046
Identities = 62/217 (28%), Positives = 80/217 (36%), Gaps = 31/217 (14%)
Query: 55 LSRRKRRREPGEGAAAPGMVPAGD-SRPLTALLACNLNPFYLLIREPKTSPEALRLRLAG 113
L R R+RE G G+AAP + +GD + L A P +L EP+ RL
Sbjct: 232 LLSRTRQRELG-GSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLPD 290
Query: 114 LKASPSFKDPESRFMEPWAP-------LPLLVGEGTPAGSSWRGSPGARRLP------LP 160
+ P P R P AP L VG G SWR G+ LP L
Sbjct: 291 FEKQPH--SPRERLDPPPAPFGQMILILGFRVGRGGTGSWSWRRGAGSAELPGCSCAQLA 348
Query: 161 ARVAERGGARVSR---RGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPR 217
++A G + SR G R + GG A R L+ L
Sbjct: 349 QQLARAGKSTESRNRLNGRRGGVEARGGGGGVA-------RAERDDVLQGLGLRGTEDWC 401
Query: 218 GRRAGRLGS-LRRGLR---LGRQRVQQRGGLPVQWSR 250
RRA R S +RRG G +R +PV +R
Sbjct: 402 ARRAPRTSSGVRRGAAPGFRGSSNTARRRSIPVSLNR 438
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 35.8 bits (81), Expect = 0.046
Identities = 62/217 (28%), Positives = 80/217 (36%), Gaps = 31/217 (14%)
Query: 55 LSRRKRRREPGEGAAAPGMVPAGD-SRPLTALLACNLNPFYLLIREPKTSPEALRLRLAG 113
L R R+RE G G+AAP + +GD + L A P +L EP+ RL
Sbjct: 232 LLSRTRQRELG-GSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLPD 290
Query: 114 LKASPSFKDPESRFMEPWAP-------LPLLVGEGTPAGSSWRGSPGARRLP------LP 160
+ P P R P AP L VG G SWR G+ LP L
Sbjct: 291 FEKQPH--SPRERLDPPPAPFGQMILILGFRVGRGGTGSWSWRRGAGSAELPGCSCAQLA 348
Query: 161 ARVAERGGARVSR---RGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPR 217
++A G + SR G R + GG A R L+ L
Sbjct: 349 QQLARAGKSTESRNRLNGRRGGVEARGGGGGVA-------RAERDDVLQGLGLRGTEDWC 401
Query: 218 GRRAGRLGS-LRRGLR---LGRQRVQQRGGLPVQWSR 250
RRA R S +RRG G +R +PV +R
Sbjct: 402 ARRAPRTSSGVRRGAAPGFRGSSNTARRRSIPVSLNR 438
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 35.4 bits (80), Expect = 0.060
Identities = 44/149 (29%), Positives = 56/149 (37%), Gaps = 31/149 (20%)
Query: 141 GTPAGSSWRGSPGARRLP----LPARVAERGGARVSRRGPRWDSG-PQTGGQAHAELLAL 195
G P + GSPGAR P LP RG GP+ + G P + G+A
Sbjct: 273 GNPGEVGFAGSPGARGFPGAPGLPGLKGHRG--HKGLEGPKGEVGAPGSKGEAGPT---- 326
Query: 196 ERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGPRDL 255
P+ A+ PL G G R GRLG + QRG + GP
Sbjct: 327 -------GPMGAMGPLGPRGMPGER-GRLGP--------QGAPGQRGAHGMPGKPGPMGP 370
Query: 256 CWLRPTAGCNRGPGPRGCAKGSVGRGGAR 284
+ ++G PG KG G GAR
Sbjct: 371 LGIPGSSGFPGNPG----MKGEAGPTGAR 395
Score = 30.4 bits (67), Expect = 1.9
Identities = 52/196 (26%), Positives = 68/196 (34%), Gaps = 43/196 (21%)
Query: 113 GLKASPSFKDPESRFMEPWAPLPLLVGE----GTPAGSSWRGSPGARRLPLPARVAERGG 168
GL +P + PE + AP GE G P RG PG+ LP
Sbjct: 573 GLTGNPGVQGPEGKLGPLGAP-----GEDGRPGPPGSIGIRGQPGSMGLP---------- 617
Query: 169 ARVSRRGPRWDSG-PQTGGQAHAELLALERRLP----EHSPLRALKPLAVGGPRGRRA-- 221
GP+ SG P G+A + +R P E P + P + G RG +
Sbjct: 618 ------GPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPP 671
Query: 222 ---------GRLGSLRRGLRLGRQRVQ-QRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPR 271
G G G + G Q V G + RG R R G PG +
Sbjct: 672 GPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEK 731
Query: 272 GCAKGSVGRGGARAAP 287
G A G G G + +P
Sbjct: 732 GMA-GGHGPDGPKGSP 746
Score = 28.1 bits (61), Expect = 9.6
Identities = 46/164 (28%), Positives = 59/164 (35%), Gaps = 40/164 (24%)
Query: 130 PWAPLPLLVGEGTPAGSSWRGSPGAR-RLPLPARVAERGGARVSRRGPRWDSGPQTGGQA 188
P P P+ G P + RG PG+R + P R +RG +GPR D G G +
Sbjct: 1085 PGTPGPV----GAPGDAGQRGDPGSRGPIGPPGRAGKRG--LPGPQGPRGDKGDH-GDRG 1137
Query: 189 HAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQW 248
+R H L+ L GP G G GS G+P +
Sbjct: 1138 -------DRGQKGHRGFTGLQGLP--GPPGPN-GEQGS---------------AGIPGPF 1172
Query: 249 SRGPRDLCWLRPTAGCNRGPGPRG-----CAKGSVGRGGARAAP 287
GPR +G PGP G +GSVG G P
Sbjct: 1173 --GPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPP 1214
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 34.3 bits (77), Expect = 0.13
Identities = 43/153 (28%), Positives = 56/153 (36%), Gaps = 25/153 (16%)
Query: 113 GLKASPSFKDPESRFMEPWA-----PLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERG 167
G+K S D + + +A P+ G W G RR +V +
Sbjct: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGL 511
Query: 168 GARVSRRGPRWDSGPQTGGQAHA--ELLALERR--------------LPEHSPLRALKPL 211
RRGP+ +G Q G QA A AL R + RA KP+
Sbjct: 512 RGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAHKPV 571
Query: 212 AVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGL 244
VG R R+G+ RR G RV QRG L
Sbjct: 572 VVGERLRGRGARVGTWRR----GGGRVAQRGQL 600
Score = 28.1 bits (61), Expect = 9.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 56 SRRKRRREPGEGAAAPGMVPAGDSRP 81
SR+K R PG A PG PAG P
Sbjct: 188 SRKKSFRAPGSPACGPGRRPAGTPMP 213
>gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 34.3 bits (77), Expect = 0.13
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 144 AGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHS 203
AGS R R +P + A R GAR +R P +G E A RL
Sbjct: 10 AGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRLGNRG 69
Query: 204 PLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWS 249
RA G P R +GRL S L L R+ R + +QWS
Sbjct: 70 LSRA------GSPLSRDSGRLLS---ALALPREAATGRLTVMLQWS 106
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 34.3 bits (77), Expect = 0.13
Identities = 50/170 (29%), Positives = 63/170 (37%), Gaps = 40/170 (23%)
Query: 113 GLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVS 172
G+ P P+ P P G GTP +G PG+R P RG
Sbjct: 1015 GMMGPPGVPGPKGSMGHPGMP----GGMGTPGEPGPQGPPGSRGPP-----GMRGAK--G 1063
Query: 173 RRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLR 232
RRGPR GP G Q R LK GP+G R GR G ++G+
Sbjct: 1064 RRGPRGPDGP-AGEQGS----------------RGLK--GPPGPQG-RPGRPG--QQGVA 1101
Query: 233 LGRQRVQQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGG 282
R + RG + GP T G PGP+G +G +G G
Sbjct: 1102 GERGHLGSRGFPGIPGPSGPPG------TKGLPGEPGPQG-PQGPIGPPG 1144
>gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]
Length = 325
Score = 33.9 bits (76), Expect = 0.18
Identities = 79/285 (27%), Positives = 104/285 (36%), Gaps = 68/285 (23%)
Query: 26 GQDGGLARQQGAIDAQ-------LLH---RSRSRCSREAL------SRRKRRREPGEGAA 69
G+ GGL+ Q G + Q LH R+ R R + ++R ++E A
Sbjct: 65 GEAGGLSDQPGVMRTQGRTVGVAALHARFRASQRAGRHPVEAELGPAQRAVQQEQRARAR 124
Query: 70 APGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSFKDPESRFME 129
APG VP G R LL + P L R + P LR+R PS +
Sbjct: 125 APGRVPGGRPR----LLQQSRPP--LPRRHGRQRPVVLRVR----AVHPSLQ-------- 166
Query: 130 PWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQA- 188
+GEG P+G G+ G+ L E +R RR P G QTG +
Sbjct: 167 -----VCHLGEGLPSGEGEDGAEGSHSLD------ECPPSRQVRRQPHIPFGFQTGVEPP 215
Query: 189 -HAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRL-------GSLRRGLRLGRQRVQQ 240
HA + P + R L PL RG + RL G R G
Sbjct: 216 HHA------AQHPPRAQTRRLFPL-----RGLQGSRLLPDLLPTGEGRPGEDPPFAGPSA 264
Query: 241 RGGLPVQWS--RGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGA 283
+P+ WS PR + L G R P G GS R GA
Sbjct: 265 WLHVPLFWSLLERPRPILRLAYLEG-RRFPWNAGLRPGSAARAGA 308
>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
sapiens]
Length = 262
Score = 33.9 bits (76), Expect = 0.18
Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 37/136 (27%)
Query: 149 RGSPG--ARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLR 206
RG+ G ARRL LP GG S R P W+SG RR P
Sbjct: 120 RGACGNTARRL-LPG-----GGRLRSPRDPAWESG---------------RRRPASGVRV 158
Query: 207 ALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRG------GLPVQWSR----GPRDLC 256
L V GPRG R +LG G + Q R +W + GPR L
Sbjct: 159 ESGVLPVPGPRGSRLSKLGGPHARSPHGNRVPQARSPALRSLETAARWRKKQPLGPRRLG 218
Query: 257 WLRPTAGCNRGPGPRG 272
W P N PG RG
Sbjct: 219 WATP----NPLPGHRG 230
>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 451
Score = 33.9 bits (76), Expect = 0.18
Identities = 49/155 (31%), Positives = 59/155 (38%), Gaps = 25/155 (16%)
Query: 149 RGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRAL 208
R PG P PAR E ++R P SG G A++ R L+
Sbjct: 114 RAIPGVH--PRPARQEE------AQRRPAPRSGSHEQG-------AVQARAAGRQQLQHR 158
Query: 209 KPLAVGGP-RGRRAGRLGSLR-RGLRLGRQRVQQRGGLPVQWSRGPRDLCWLRPTAGCNR 266
+P A G P R R A R+ LR RG R R Q RG V GP RP A R
Sbjct: 159 QPPARGRPVRRRPAARVLRLRCRGSR-ARSLQQARGQQRVAQGSGPVQRREARPGASRRR 217
Query: 267 GPG-------PRGCAKGSVGRGGARAAPNHTHVVP 294
GP PR G + + GA + H P
Sbjct: 218 GPALQQQLGHPRVSVPGGLVQRGAPRPVHRAHRGP 252
>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 487
Score = 33.9 bits (76), Expect = 0.18
Identities = 49/155 (31%), Positives = 59/155 (38%), Gaps = 25/155 (16%)
Query: 149 RGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRAL 208
R PG P PAR E ++R P SG G A++ R L+
Sbjct: 114 RAIPGVH--PRPARQEE------AQRRPAPRSGSHEQG-------AVQARAAGRQQLQHR 158
Query: 209 KPLAVGGP-RGRRAGRLGSLR-RGLRLGRQRVQQRGGLPVQWSRGPRDLCWLRPTAGCNR 266
+P A G P R R A R+ LR RG R R Q RG V GP RP A R
Sbjct: 159 QPPARGRPVRRRPAARVLRLRCRGSR-ARSLQQARGQQRVAQGSGPVQRREARPGASRRR 217
Query: 267 GPG-------PRGCAKGSVGRGGARAAPNHTHVVP 294
GP PR G + + GA + H P
Sbjct: 218 GPALQQQLGHPRVSVPGGLVQRGAPRPVHRAHRGP 252
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 33.5 bits (75), Expect = 0.23
Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 30/151 (19%)
Query: 139 GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERR 198
GE PAG G+PGA P P A + G R GP +GP
Sbjct: 1037 GETGPAGPP--GAPGAPGAPGPVGPAGKSGDR-GETGPAGPAGPV--------------- 1078
Query: 199 LPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGPRDLCWL 258
P+ A P GPRG + RG++ RG +Q GP
Sbjct: 1079 ----GPVGARGPAGPQGPRGDKGETGEQGDRGIK------GHRGFSGLQGPPGPPGSPGE 1128
Query: 259 RPTAGCNRGPGPRG--CAKGSVGRGGARAAP 287
+ +G + GPRG + G+ G+ G P
Sbjct: 1129 QGPSGASGPAGPRGPPGSAGAPGKDGLNGLP 1159
Score = 32.3 bits (72), Expect = 0.51
Identities = 43/148 (29%), Positives = 51/148 (34%), Gaps = 26/148 (17%)
Query: 141 GTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLP 200
G P RG PG+R P VA G G R GP P
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAGPKGP----AGERGSPGPAG---------------P 519
Query: 201 EHSPLRALKPLAVGGPRGR-RAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGPRDLCWLR 259
+ SP A +P G P + G GS + G + G P GP R
Sbjct: 520 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP-----GPPGPPGAR 574
Query: 260 PTAGCNRGPGPRGCAKGSVGRGGARAAP 287
AG PGP+G A G G+ G R P
Sbjct: 575 GQAGVMGFPGPKGAA-GEPGKAGERGVP 601
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 33.5 bits (75), Expect = 0.23
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 140 EGTPAGSSWRGSPGARRLPLPARVAERGG-------ARVSRRGPRWD-SGPQTGGQAHAE 191
+ TP GSS + SP + P PA ++ G AR S +GP GP T +AHA
Sbjct: 63 QSTPLGSSSKSSPPVLQGPAPAGFSQHPGLLVPHTHARDSSQGPCEPLPGPLTQPRAHA- 121
Query: 192 LLALERRLPEHSPLR-ALKPLAVGGPRGRRAGRLG 225
SP AL P A GP R+ +G
Sbjct: 122 -----------SPFSGALTPSAPPGPEMNRSAEVG 145
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 33.5 bits (75), Expect = 0.23
Identities = 50/171 (29%), Positives = 58/171 (33%), Gaps = 47/171 (27%)
Query: 139 GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPR-WDSGPQTGGQAHAELLALER 197
G G GS R G R + +R+A G R PR W GGQ L +
Sbjct: 137 GRGAVRGSGKRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGW------GGQGAERLGVHQP 190
Query: 198 RLPEH-------------------SPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 238
LP H SP RA +P + G PR RR LGS R GR +
Sbjct: 191 GLPTHAALRGGGGGSEGGGGGARPSPPRARQPPS-GRPRPRRTRLLGSAER--HTGRAAL 247
Query: 239 QQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVG-----RGGAR 284
+ G L RP A RG A RGGAR
Sbjct: 248 ARHGQLS-------------RPHAAVRNSSRGRGAATSVSAAARPTRGGAR 285
Score = 29.3 bits (64), Expect = 4.3
Identities = 55/184 (29%), Positives = 67/184 (36%), Gaps = 43/184 (23%)
Query: 130 PWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAH 189
P AP+ P + GSP RR R+A G R PR G
Sbjct: 64 PTAPVSFSRIRRNPLRTQLSGSP-PRRPTSVLRLASPAGDLPRRPRPRAGGG-------- 114
Query: 190 AELLALERRLPEHSPLRALKPLAVGGPRGR-RAGR---LGS-LRRGLRLGRQRVQQ---- 240
HSP A+ + GG +GR R GR GS RRG L QRV+
Sbjct: 115 -----------RHSPRPAVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQRVRSRLAG 163
Query: 241 ----RGG--LPVQWSRGPRDLCWLR----PTAGCNRGPGPRGCAKGSVGRGGARAAPNHT 290
RGG P W + + PT RG G G ++G G GGAR +P
Sbjct: 164 LGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGG--GGSEG--GGGGARPSPPRA 219
Query: 291 HVVP 294
P
Sbjct: 220 RQPP 223
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 33.5 bits (75), Expect = 0.23
Identities = 48/185 (25%), Positives = 65/185 (35%), Gaps = 32/185 (17%)
Query: 52 REALSRRKRRREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRL 111
++ALS + P G +P S+P T P+ SP A L+
Sbjct: 457 KQALSALEEAGAPAPGRPSPATAAVPSSQPKT--------------EAPQASPLAKPLQ- 501
Query: 112 AGLKASPSFKDPESRFMEPWAPLPLL----------VGEGTPAGSSWRGSPGARRLPLPA 161
+SP SR MEP APL G A SS G GA P P
Sbjct: 502 ---SSSPRVLGLPSR-MEPPAPLSTSSTSQASALPPAGRRNLAESSGVGRVGAGSRPKPE 557
Query: 162 RVAERGGARVSRR--GPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALKPLAVGGPRG 218
+G + + G + G A L ++RR P L+ +P A+ PR
Sbjct: 558 APMAKGKSTTLTQDMSTSLQEGQEDGPAGWRANLKPVDRRSPAERTLKPKEPRALAEPRA 617
Query: 219 RRAGR 223
A R
Sbjct: 618 GEAPR 622
>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
[Homo sapiens]
Length = 1017
Score = 33.1 bits (74), Expect = 0.30
Identities = 48/152 (31%), Positives = 57/152 (37%), Gaps = 19/152 (12%)
Query: 63 EPGEGAAA------PGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKA 116
EPG G P + PA L +LL L PF L+ P SP +L LAG
Sbjct: 733 EPGGGPRPRRPLLLPNLSPARPRGSLVSLLGEELPPFSALVSSPSLSP-SLSPALAGQGH 791
Query: 117 SPSFKDPESRFMEPWAPLPLLV---GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSR 173
S S P R W P LL+ G P S R G + AE R SR
Sbjct: 792 SASPHGP-PRCSAAWKPPQLLIPPLGTFGPPDLSPRIVDG---IEDSGSTAEAPSFRFSR 847
Query: 174 R----GPRWDSGPQTGGQAHAELLALERRLPE 201
R PR P TG + EL + + E
Sbjct: 848 RPELPRPR-SQAPPTGTRPSPELASEAEEVKE 878
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 33.1 bits (74), Expect = 0.30
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 104 PEALRLRLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARV 163
P +R+ G++ +P DP+++ P + + G S G G R P A
Sbjct: 67 PPTRAIRMQGIRNTPG-GDPKAQACFPTSAANRSF-QPRSLGGSLAGIAGPRPSPCQAHD 124
Query: 164 AERGGA-RVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG-GPRGRRA 221
ERGG R S R D G R+P PL L P A G GR +
Sbjct: 125 CERGGGGRPSHRAAAVDQGRP------------RPRVPRGQPLPGLHPSAAAPGVGGRAS 172
Query: 222 GRLGSLRRG 230
G G L G
Sbjct: 173 GAGGLLGEG 181
>gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens]
Length = 104
Score = 33.1 bits (74), Expect = 0.30
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 170 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 209
R S+ P W SG + GG+ AEL+ L +RL E++ L+A++
Sbjct: 29 RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69
>gi|51242137 transmembrane protein 200B [Homo sapiens]
Length = 307
Score = 33.1 bits (74), Expect = 0.30
Identities = 53/187 (28%), Positives = 73/187 (39%), Gaps = 35/187 (18%)
Query: 98 REPKTSPEALRLRLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSW---RGSPGA 154
R P++ PE LR+R A + P F A L +LVG G W G+PG+
Sbjct: 31 RRPRSPPEPLRVR-----ARLRLRSPSGAFAALGA-LVVLVGMGIAVAGYWPHRAGAPGS 84
Query: 155 RRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG 214
R A + + + R G + GG+AH H LR L P+ +G
Sbjct: 85 R----AANASSPQMSELRREG-------RGGGRAHG----------PHERLRLLGPVIMG 123
Query: 215 GPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSR---GPRDLCWLRPTAGCNRGPGPR 271
L L +R++Q G L Q R GP C L P+ G R P
Sbjct: 124 VGLFVFICANTLLYENRDLETRRLRQ-GVLRAQALRPPDGPGWDCALLPSPG-PRSPRAV 181
Query: 272 GCAKGSV 278
GCA+ +
Sbjct: 182 GCAEPEI 188
>gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartate
3A [Homo sapiens]
Length = 1115
Score = 32.7 bits (73), Expect = 0.39
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 17/118 (14%)
Query: 90 LNPFYLLIREPKTSPEALRLRLAGLKASPSFKDP-------------ESRFMEPWAPLPL 136
L+ ++LL R P L LAG+ +S S P + ++PW P
Sbjct: 4 LSLWWLLSRVCLLLPPPCALVLAGVPSSSSHPQPCQILKRIGHAVRVGAVHLQPWTTAPR 63
Query: 137 LVG---EGTPAGSSW-RGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHA 190
+ + AG+ PG RR P P+ A G+ + RGP P G +A A
Sbjct: 64 AASRAPDDSRAGAQRDEPEPGTRRSPAPSPGARWLGSTLHGRGPPGSRKPGEGARAEA 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,328,126
Number of Sequences: 37866
Number of extensions: 853942
Number of successful extensions: 3663
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 3463
Number of HSP's gapped (non-prelim): 398
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.