Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289978 Sequence: fasta or formatted (944aa) NCBI GI: 239751877
Description:

PREDICTED: hypothetical protein XP_002348035

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1        105           5
 C cysteine            2.0         19           2
 D aspartate           2.8         26           2
 E glutamate           5.8         55           2
 F phenylalanine       1.5         14           1
 G glycine            16.0        151           5
 H histidine           3.9         37           2
 I isoleucine          1.1         10           1
 K lysine              1.3         12           1
 L leucine            13.2        125           2
 M methionine          0.4          4           1
 N asparagine          0.7          7           2
 P proline             7.5         71           2
 Q glutamine           5.2         49           3
 R arginine           12.2        115           3
 S serine              4.7         44           2
 T threonine           2.2         21           1
 V valine              5.8         55           2
 W tryptophan          2.0         19           1
 Y tyrosine            0.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348035 
LOC100291995          0.455   PREDICTED: hypothetical protein XP_002345272 
LOC100288302          0.327   PREDICTED: hypothetical protein XP_002343738 
LOC100130667          0.030   PREDICTED: hypothetical protein 
LOC100130667          0.030   PREDICTED: hypothetical protein 
LOC100130667          0.030   PREDICTED: hypothetical protein 
LOC728767             0.017   PREDICTED: hypothetical protein 
LOC728767             0.017   PREDICTED: hypothetical protein 
LOC100130262          0.015   PREDICTED: hypothetical protein 
LOC100130262          0.015   PREDICTED: hypothetical protein 
LOC100130262          0.015   PREDICTED: hypothetical protein 
ARID1B                0.013   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.013   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.013   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100287385          0.011   PREDICTED: hypothetical protein XP_002343487 
LOC338758             0.011   PREDICTED: hypothetical protein 
LOC338758             0.011   PREDICTED: hypothetical protein 
LOC338758             0.010   PREDICTED: hypothetical protein 
LOC100292008          0.010   PREDICTED: similar to ZNF668 protein 
LOC100291370          0.010   PREDICTED: hypothetical protein XP_002347637 
MBD2                  0.010   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.010   methyl-CpG binding domain protein 2 isoform 1 
POU3F1                0.010   POU domain, class 3, transcription factor 1 
LOC100287063          0.009   PREDICTED: hypothetical protein 
LOC100292058          0.009   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.009   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.009   PREDICTED: hypothetical protein XP_002343287 
MRVI1                 0.009   JAW1-related protein isoform a 
MRVI1                 0.009   JAW1-related protein isoform b 
MRVI1                 0.009   JAW1-related protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press