Guide to the Human Genome
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Name: LOC100293902 Sequence: fasta or formatted (325aa) NCBI GI: 239756701
Description:

PREDICTED: similar to hCG1986016

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         35           3
 C cysteine            0.6          2           1
 D aspartate           1.8          6           1
 E glutamate           7.1         23           2
 F phenylalanine       2.2          7           1
 G glycine            13.2         43           2
 H histidine           3.7         12           2
 I isoleucine          0.9          3           1
 K lysine              0.6          2           1
 L leucine            11.1         36           2
 M methionine          0.9          3           1
 N asparagine          0.3          1           1
 P proline            10.5         34           2
 Q glutamine           8.0         26           2
 R arginine           13.8         45           2
 S serine              4.9         16           1
 T threonine           2.5          8           1
 V valine              5.5         18           2
 W tryptophan          1.2          4           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1986016 
LOC100290409          0.991   PREDICTED: hypothetical protein XP_002347745 
LOC100288822          0.969   PREDICTED: hypothetical protein XP_002343515 
FLJ37078              0.028   hypothetical protein LOC222183 
LOC100291596          0.027   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.027   PREDICTED: hypothetical protein XP_002343259 
LOC100288068          0.025   PREDICTED: hypothetical protein 
LOC100130897          0.023   PREDICTED: hypothetical protein 
LOC100130897          0.023   PREDICTED: hypothetical protein 
LOC100293502          0.022   PREDICTED: hypothetical protein 
LOC100289250          0.022   PREDICTED: hypothetical protein XP_002342089 
ARID1A                0.020   AT rich interactive domain 1A isoform a 
ARID1A                0.020   AT rich interactive domain 1A isoform b 
BAHCC1                0.020   BAH domain and coiled-coil containing 1 
PLEKHA4               0.019   pleckstrin homology domain containing family A memb...
LOC100290023          0.017   PREDICTED: hypothetical protein XP_002348147 
CACNA1B               0.017   calcium channel, voltage-dependent, N type, alpha 1B ...
PYGO2                 0.017   pygopus homolog 2 
CLIC6                 0.017   chloride intracellular channel 6 
LOC728767             0.016   PREDICTED: hypothetical protein 
LOC728767             0.016   PREDICTED: hypothetical protein 
SRRM2                 0.016   splicing coactivator subunit SRm300 
FBRSL1                0.014   fibrosin-like 1 
COL22A1               0.014   collagen, type XXII, alpha 1 
LOC100291624          0.014   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.014   PREDICTED: hypothetical protein XP_002346761 
LOC100287281          0.014   PREDICTED: hypothetical protein 
LOC100287455          0.014   PREDICTED: hypothetical protein XP_002342583 
LOC100287281          0.014   PREDICTED: hypothetical protein XP_002342581 
LATS2                 0.014   LATS, large tumor suppressor, homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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