Guide to the Human Genome
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Name: LOC100132799 Sequence: fasta or formatted (150aa) NCBI GI: 169208488
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         20           2
 C cysteine            1.3          2           1
 D aspartate           2.0          3           1
 E glutamate           3.3          5           1
 F phenylalanine       1.3          2           1
 G glycine            12.0         18           3
 H histidine           2.7          4           1
 I isoleucine          1.3          2           1
 K lysine              3.3          5           1
 L leucine            11.3         17           2
 M methionine          1.3          2           1
 N asparagine          2.7          4           2
 P proline            10.7         16           5
 Q glutamine           4.0          6           1
 R arginine           11.3         17           1
 S serine             10.0         15           1
 T threonine           4.0          6           1
 V valine              2.0          3           1
 W tryptophan          2.0          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132084          0.300   PREDICTED: hypothetical protein 
BAG1                  0.064   BCL2-associated athanogene isoform 1L 
LOC100131455          0.042   PREDICTED: hypothetical protein 
LOC100131455          0.042   PREDICTED: hypothetical protein 
LOC100131455          0.042   PREDICTED: hypothetical protein 
C9orf66               0.042   hypothetical protein LOC157983 
AGAP2                 0.042   centaurin, gamma 1 isoform PIKE-L 
FZD8                  0.042   frizzled 8 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.039   PREDICTED: hypothetical protein LOC80164 
LOC729370             0.039   PREDICTED: hypothetical protein 
ZC3H18                0.039   zinc finger CCCH-type containing 18 
SAMD1                 0.039   sterile alpha motif domain containing 1 
LOC100293441          0.039   PREDICTED: hypothetical protein 
LOC100289925          0.039   PREDICTED: hypothetical protein XP_002347406 
LOC100288653          0.039   PREDICTED: hypothetical protein XP_002343232 
HOXA3                 0.035   homeobox A3 isoform a 
HOXA3                 0.035   homeobox A3 isoform a 
FNDC1                 0.035   fibronectin type III domain containing 1 
SRRM2                 0.035   splicing coactivator subunit SRm300 
LOC100130503          0.035   PREDICTED: hypothetical protein 
LOC100130503          0.035   PREDICTED: hypothetical protein 
ATXN7                 0.035   ataxin 7 isoform b 
ATXN7                 0.035   ataxin 7 isoform a 
LOC100293652          0.035   PREDICTED: hypothetical protein 
LOC100127891          0.035   PREDICTED: hypothetical protein 
LOC100291016          0.035   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.035   PREDICTED: hypothetical protein XP_002343597 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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