Guide to the Human Genome
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Name: LOC100287281 Sequence: fasta or formatted (295aa) NCBI GI: 239748653
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {295aa} PREDICTED: hypothetical protein XP_002342581
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         34           3
 C cysteine            1.7          5           1
 D aspartate           2.7          8           1
 E glutamate           4.4         13           1
 F phenylalanine       1.0          3           1
 G glycine            13.2         39           2
 H histidine           1.7          5           1
 I isoleucine          0.7          2           1
 K lysine              2.7          8           1
 L leucine            12.9         38           2
 M methionine          1.0          3           1
 N asparagine          1.4          4           1
 P proline            10.2         30           1
 Q glutamine           4.1         12           2
 R arginine           14.9         44           3
 S serine              6.1         18           2
 T threonine           2.0          6           1
 V valine              5.8         17           2
 W tryptophan          1.7          5           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287281          1.000   PREDICTED: hypothetical protein XP_002342581 
LOC100291779          0.988   PREDICTED: hypothetical protein XP_002345879 
LOC100289978          0.024   PREDICTED: hypothetical protein XP_002348035 
LEMD2                 0.024   LEM domain containing 2 isoform 1 
COL25A1               0.023   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.023   collagen, type XXV, alpha 1 isoform 2 
LOC283999             0.023   hypothetical protein LOC283999 
C1orf77               0.021   small protein rich in arginine and glycine 
GPRIN1                0.021   G protein-regulated inducer of neurite outgrowth 1 ...
LAG3                  0.019   lymphocyte-activation protein 3 precursor 
LOC100292122          0.019   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.019   PREDICTED: hypothetical protein XP_002344191 
COL5A2                0.017   alpha 2 type V collagen preproprotein 
LOC100291129          0.016   PREDICTED: hypothetical protein XP_002347815 
LOC100132799          0.016   PREDICTED: hypothetical protein 
COL27A1               0.016   collagen, type XXVII, alpha 1 
LOC100293902          0.016   PREDICTED: similar to hCG1986016 
LOC100291176          0.016   PREDICTED: hypothetical protein XP_002346954 
TMEM88B               0.016   PREDICTED: hypothetical protein LOC643965 
TMEM88B               0.016   PREDICTED: hypothetical protein LOC643965 
COL1A1                0.014   alpha 1 type I collagen preproprotein 
SEC16A                0.014   SEC16 homolog A 
LOC338758             0.014   PREDICTED: hypothetical protein 
MICALL2               0.014   MICAL-like 2 isoform 1 
KCNH4                 0.014   potassium voltage-gated channel, subfamily H, member ...
LOC100292397          0.014   PREDICTED: hypothetical protein 
AKAP7                 0.014   A-kinase anchor protein 7 isoform beta 
TMEM200B              0.014   transmembrane protein 200B 
GRIN3A                0.014   glutamate receptor, ionotropic, N-methyl-D-aspartat...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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