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Search of human proteins with 117320535
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117320535 proline-rich protein 3 isoform a [Homo sapiens]
(188 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117320535 proline-rich protein 3 isoform a [Homo sapiens] 425 e-119
gi|117320543 proline-rich protein 3 isoform b [Homo sapiens] 367 e-102
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 72 2e-13
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 56 2e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 55 4e-08
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 52 2e-07
gi|7706501 WW domain binding protein 11 [Homo sapiens] 52 3e-07
gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo ... 50 9e-07
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 50 1e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 50 1e-06
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 50 1e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 49 2e-06
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 49 3e-06
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 49 3e-06
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 48 4e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 48 4e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 48 6e-06
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 48 6e-06
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 48 6e-06
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 48 6e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 48 6e-06
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 48 6e-06
gi|18959210 WIRE protein [Homo sapiens] 47 7e-06
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 47 1e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 1e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 47 1e-05
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 47 1e-05
gi|118498339 EMI domain containing 2 [Homo sapiens] 46 2e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 46 2e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 45 3e-05
>gi|117320535 proline-rich protein 3 isoform a [Homo sapiens]
Length = 188
Score = 425 bits (1093), Expect = e-119
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MPKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHR 60
MPKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHR
Sbjct: 1 MPKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHR 60
Query: 61 GPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTR 120
GPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTR
Sbjct: 61 GPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTR 120
Query: 121 GSFHKEQRNPRRLKSWSLIKNTCPPKDDPQVMEDKSDRPVCRHFAKKGHCRYEDLCAFYH 180
GSFHKEQRNPRRLKSWSLIKNTCPPKDDPQVMEDKSDRPVCRHFAKKGHCRYEDLCAFYH
Sbjct: 121 GSFHKEQRNPRRLKSWSLIKNTCPPKDDPQVMEDKSDRPVCRHFAKKGHCRYEDLCAFYH 180
Query: 181 PGVNGPPL 188
PGVNGPPL
Sbjct: 181 PGVNGPPL 188
>gi|117320543 proline-rich protein 3 isoform b [Homo sapiens]
Length = 167
Score = 367 bits (941), Expect = e-102
Identities = 167/188 (88%), Positives = 167/188 (88%), Gaps = 21/188 (11%)
Query: 1 MPKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHR 60
MPKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPI ALHR
Sbjct: 1 MPKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPI---------------------ALHR 39
Query: 61 GPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTR 120
GPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTR
Sbjct: 40 GPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTR 99
Query: 121 GSFHKEQRNPRRLKSWSLIKNTCPPKDDPQVMEDKSDRPVCRHFAKKGHCRYEDLCAFYH 180
GSFHKEQRNPRRLKSWSLIKNTCPPKDDPQVMEDKSDRPVCRHFAKKGHCRYEDLCAFYH
Sbjct: 100 GSFHKEQRNPRRLKSWSLIKNTCPPKDDPQVMEDKSDRPVCRHFAKKGHCRYEDLCAFYH 159
Query: 181 PGVNGPPL 188
PGVNGPPL
Sbjct: 160 PGVNGPPL 167
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 72.4 bits (176), Expect = 2e-13
Identities = 44/120 (36%), Positives = 52/120 (43%), Gaps = 28/120 (23%)
Query: 89 GLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTRGSFHKEQRNPRRLKSWSLIKNTCPPKDD 148
G P P G G P GPGHGGP P + + PP +
Sbjct: 828 GHRPHEGP-GGSMGGSGGHRPHEGPGHGGP-------HGHRPHDVPGHRGHDHRGPPPHE 879
Query: 149 PQVME--------------------DKSDRPVCRHFAKKGHCRYEDLCAFYHPGVNGPPL 188
+ + D S+RPVCRHF KG+CRYE+ CAFYHPGVNGPPL
Sbjct: 880 HRGHDGPGHGGGGHRGHDGGHSHGGDMSNRPVCRHFMMKGNCRYENNCAFYHPGVNGPPL 939
Score = 59.3 bits (142), Expect = 2e-09
Identities = 44/109 (40%), Positives = 47/109 (43%), Gaps = 29/109 (26%)
Query: 37 PPSLLGPPPMANG----KPGDPKSALHRGPP----------GSRGPLIPPLLSLPPPPWG 82
P LLGP P+ANG PG PK H P G GP+ P LL PPPP G
Sbjct: 616 PHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRG 675
Query: 83 R-------------GPIRRGLGPRSSPY--GRGWWGVNAEPPFPGPGHG 116
GP+R G GP PY GRG G N PP P P G
Sbjct: 676 GDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRG 724
Score = 46.2 bits (108), Expect = 2e-05
Identities = 48/139 (34%), Positives = 51/139 (36%), Gaps = 29/139 (20%)
Query: 15 QQQPPLPEREETGDEED-GSPIGPPSLLGPPPMANGK-----PGDP-------------K 55
Q PP P G G P+GP L PPP G PGDP
Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGP 700
Query: 56 SALHRGPPGSRGPLIPPLLSLPPPPW-GRGPIRRGLGP---RSSPYGRGWWGVNAEPPFP 111
HRG G G PP PPPP+ G R G GP R P G G G P
Sbjct: 701 GPYHRGRGGRGGNEPPP----PPPPFRGARGGRSGGGPPNGRGGP-GGGMVGGGGHRPHE 755
Query: 112 GPGHGGPTRGSFHKEQRNP 130
GPG GG S H+ P
Sbjct: 756 GPG-GGMGNSSGHRPHEGP 773
Score = 28.9 bits (63), Expect = 2.7
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 20/102 (19%)
Query: 6 KQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGS 65
K++ H+P + P+P + DEE S+ P + +PG + P G+
Sbjct: 501 KESPHEPDPEPYEPIPPKLIPLDEE-------CSMDETPYVETLEPGGSGGS----PDGA 549
Query: 66 RGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE 107
G +PP+L+ + +G P G G G+N +
Sbjct: 550 GGSKLPPVLA---------NLMGSMGAGKGPQGPGGGGINVQ 582
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 55.8 bits (133), Expect = 2e-08
Identities = 43/124 (34%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 5 KKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP-GDPKSALHRGPP 63
K Q PP + Q P P+ G++ G P P GPPP KP G P +GPP
Sbjct: 46 KPQGPPSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 102
Query: 64 ----GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE--PPFPGPGHGG 117
SR P PP PPP G + P P G G N PP PG G
Sbjct: 103 PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 162
Query: 118 PTRG 121
P +G
Sbjct: 163 PPQG 166
Score = 52.4 bits (124), Expect = 2e-07
Identities = 41/125 (32%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 5 KKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP-GDPKSALHRGPP 63
K ++ PP + Q P P+ G++ G P P GPPP KP G P +GPP
Sbjct: 107 KSRSPRSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 163
Query: 64 -----GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE--PPFPGPGHG 116
SR PP PPP G + P P G G N PP PG G
Sbjct: 164 PQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 223
Query: 117 GPTRG 121
P +G
Sbjct: 224 PPPQG 228
Score = 50.4 bits (119), Expect = 9e-07
Identities = 41/132 (31%), Positives = 52/132 (39%), Gaps = 6/132 (4%)
Query: 5 KKQNHHQPPTQQQPPLPE---REETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRG 61
K Q+ PP + Q P P+ + + G P GPP G P PG P+ +G
Sbjct: 231 KSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 290
Query: 62 PPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE--PPFPGPGHGGPT 119
SR PP PPP G + P P G G N PP PG G P
Sbjct: 291 GSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 350
Query: 120 R-GSFHKEQRNP 130
+ GS + R+P
Sbjct: 351 QGGSKSRSARSP 362
Score = 49.3 bits (116), Expect = 2e-06
Identities = 44/129 (34%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSL-LGPPPMANGKP--GDPKSALHRGPP--GSR 66
PP + Q P P+ GD + S PP GPPP +P P +GPP G
Sbjct: 217 PPGKPQGPPPQ----GDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 272
Query: 67 GPLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRGWWGVN---AEPPFPGPGHGGPTRG 121
P PP P PPP G R P P G G N PP PG G P +G
Sbjct: 273 KPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 332
Query: 122 SFHKEQRNP 130
+K Q P
Sbjct: 333 G-NKPQGPP 340
Score = 48.1 bits (113), Expect = 4e-06
Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 6/132 (4%)
Query: 5 KKQNHHQPPTQQQPPLPE---REETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRG 61
K ++ PP + Q P P+ + + G P GPP G P PG P+ +G
Sbjct: 169 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228
Query: 62 PPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE--PPFPGPGHGGPT 119
S+ PP PPP G + P P G G N PP PG G P
Sbjct: 229 DNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 288
Query: 120 R-GSFHKEQRNP 130
+ GS + R+P
Sbjct: 289 QGGSKSRSSRSP 300
Score = 47.8 bits (112), Expect = 6e-06
Identities = 43/129 (33%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSL-LGPPPMANGKP--GDPKSALHRGPP--GSR 66
PP + Q P P+ GD + S PP GPPP +P P +GPP G
Sbjct: 155 PPGKPQGPPPQ----GDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 210
Query: 67 GPLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRGWWGVN---AEPPFPGPGHGGPTRG 121
P PP P PPP G + P P G G N PP PG G P +G
Sbjct: 211 KPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 270
Query: 122 SFHKEQRNP 130
+K Q P
Sbjct: 271 G-NKPQGPP 278
Score = 47.0 bits (110), Expect = 1e-05
Identities = 45/144 (31%), Positives = 52/144 (36%), Gaps = 26/144 (18%)
Query: 12 PPTQQQPPLPE--REETGDEEDGSPIGPP--------------SLLGPPPMANGKP--GD 53
PP + Q P P+ + G G P GPP GPPP +P
Sbjct: 74 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 133
Query: 54 PKSALHRGPP--GSRGPLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRGWWGVN---A 106
P +GPP G P PP P PPP G R P P G G N
Sbjct: 134 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQG 193
Query: 107 EPPFPGPGHGGPTRGSFHKEQRNP 130
PP PG G P +G +K Q P
Sbjct: 194 PPPPPGKPQGPPPQGG-NKPQGPP 216
Score = 42.7 bits (99), Expect = 2e-04
Identities = 41/133 (30%), Positives = 49/133 (36%), Gaps = 29/133 (21%)
Query: 5 KKQNHHQPPTQQQPPLPE---REETGDEEDGSPIGPPSLLGPPPMANGKPGDP------- 54
K ++ PP + Q P P+ + + G P GPP G P PG P
Sbjct: 293 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 352
Query: 55 --KSALHRGPPGSRGPLIPPLL-----SLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE 107
KS R PPG P PP PPPP G P + P P G
Sbjct: 353 GSKSRSARSPPGK--PQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQG--------- 401
Query: 108 PPFPGPGHGGPTR 120
PP P P G P+R
Sbjct: 402 PPRP-PQGGRPSR 413
Score = 42.0 bits (97), Expect = 3e-04
Identities = 38/113 (33%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 27 GDEEDGSPIGPPSLLGPPPMANGKP--GDPKSALHRGPP--GSRGPLIPPLLSLP--PPP 80
G++ G P P GPPP +P P +GPP G P PP P PPP
Sbjct: 44 GNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 103
Query: 81 WG---RGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTRGSFHKEQRNP 130
G R P R G P +G PP PG G P +G +K Q P
Sbjct: 104 QGDKSRSP-RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG-NKPQGPP 154
Score = 41.2 bits (95), Expect = 5e-04
Identities = 36/113 (31%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP--GDPKSALHRGPP--GSRG 67
PP + Q P P + + SP G P GPPP +P P +GPP G
Sbjct: 279 PPGKPQGP-PPQGGSKSRSSRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 335
Query: 68 PLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGP 118
P PP P PPP G R P P G N P P G P
Sbjct: 336 PQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNP 388
Score = 38.1 bits (87), Expect = 0.004
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 30 EDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG 89
ED S PSL+ G+P+ A +G +GP PP PPP G +
Sbjct: 21 EDVSQEESPSLIA---------GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGP 71
Query: 90 LGPRSSPYGRGWWGVNAE--PPFPGPGHGGPTRGSFHKEQRNP 130
P P G G N PP PG G P +G + R+P
Sbjct: 72 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP 114
Score = 36.2 bits (82), Expect = 0.017
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 12 PPTQQQPPLPE---REETGDEEDGSPIGPPSL-----LGPPPMANGKPGDPKSALHRGPP 63
PP + Q P P+ + + G P GPP GPPP A G P P++ PP
Sbjct: 341 PPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQA-----PP 395
Query: 64 GS--RGPLIPPLLSLPPPP 80
+GP PP P P
Sbjct: 396 AGQPQGPPRPPQGGRPSRP 414
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 55.1 bits (131), Expect = 4e-08
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 5 KKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP-GDPKSALHRGPP 63
K ++ PP + Q P P+ G++ G P P GPPP +P G P +GPP
Sbjct: 86 KSRSPRSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPP 142
Query: 64 ----GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE--PPFPGPGHGG 117
SR P PP PPP G + P P G G PP PG G
Sbjct: 143 PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGP 202
Query: 118 PTRGSFHKEQRNP 130
P +G + ++P
Sbjct: 203 PPQGDKSRSSQSP 215
Score = 53.1 bits (126), Expect = 1e-07
Identities = 41/121 (33%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 17 QPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP-GDPKSALHRGPP----GSRGPLIP 71
Q P P+ G++ G P P GPPP KP G P +GPP SR P P
Sbjct: 37 QGPSPQG---GNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP 93
Query: 72 PLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE--PPFPGPGHGGPTRGSFHKEQRN 129
P PPP G + P P G G N PP PG G P +G + R+
Sbjct: 94 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRS 153
Query: 130 P 130
P
Sbjct: 154 P 154
Score = 52.8 bits (125), Expect = 2e-07
Identities = 44/134 (32%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 5 KKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP-GDPKSALHRGPP 63
K ++ PP + Q P P+ G++ G P P GPPP KP G P +GPP
Sbjct: 147 KSRSPRSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPP 203
Query: 64 ----GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAE--PPFPGPGHGG 117
SR PP PPP G + P P G G N PP PG G
Sbjct: 204 PQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 263
Query: 118 PTR-GSFHKEQRNP 130
P + GS + R+P
Sbjct: 264 PAQGGSKSQSARSP 277
Score = 47.0 bits (110), Expect = 1e-05
Identities = 41/134 (30%), Positives = 50/134 (37%), Gaps = 31/134 (23%)
Query: 5 KKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP-GDPKSALHRGPP 63
K ++ PP + Q P P+ G++ G P P GPPP KP G P +GPP
Sbjct: 208 KSRSSQSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 264
Query: 64 GSRG------------PLIPPLLSL-----PPPPWGRGPIRRGLGPRSSPYGRGWWGVNA 106
G P PP PPPP G P + P P G
Sbjct: 265 AQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQG-------- 316
Query: 107 EPPFPGPGHGGPTR 120
PP P P G P+R
Sbjct: 317 -PPRP-PQGGRPSR 328
Score = 43.1 bits (100), Expect = 1e-04
Identities = 45/144 (31%), Positives = 52/144 (36%), Gaps = 27/144 (18%)
Query: 12 PPTQQQPPLPE--REETGDEEDGSPIGPP--------------SLLGPPPMANGKP--GD 53
PP + Q P P+ G G P GPP GPPP +P
Sbjct: 114 PPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 173
Query: 54 PKSALHRGPP--GSRGPLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRGWWGVN---A 106
P +GPP G + P PP P PPP G R P P G G N
Sbjct: 174 PPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQG-DKSRSSQSPPGKPQGPPPQGGNQPQG 232
Query: 107 EPPFPGPGHGGPTRGSFHKEQRNP 130
PP PG G P +G +K Q P
Sbjct: 233 PPPPPGKPQGPPPQGG-NKPQGPP 255
Score = 42.0 bits (97), Expect = 3e-04
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 12 PPTQQQPPLPE--REETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPL 69
PP + Q P P+ ++ G G P GPP + PG P+ +G +GP
Sbjct: 175 PPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPP 234
Query: 70 IPPLLSLPPPPWG----RGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTRGSFHK 125
PP PPP G +GP G P+ P G +A P PG G P +
Sbjct: 235 PPPGKPQGPPPQGGNKPQGPPPPG-KPQGPPAQGGSKSQSARSP-PGKPQGPP-----QQ 287
Query: 126 EQRNPR 131
E NP+
Sbjct: 288 EGNNPQ 293
Score = 35.0 bits (79), Expect = 0.038
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 5 KKQNHHQPPTQQQPPLP--EREETGDEEDGSPIGPPSL-----LGPPPMANGKPGDPKSA 57
K Q P Q PP + ++ G P GPP GPPP A G P P++
Sbjct: 250 KPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQA- 308
Query: 58 LHRGPPGS--RGPLIPPLLSLPPPP 80
PP +GP PP P P
Sbjct: 309 ----PPAGQPQGPPRPPQGGRPSRP 329
Score = 29.6 bits (65), Expect = 1.6
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 30 EDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG 89
ED S PSL+ G+P+ +G +GP PP PPP G G +G
Sbjct: 21 EDVSQEESPSLIA---------GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQG-GNKPQG 70
Query: 90 LGPRSSPYGRGWWGVNAEPPF--PGPGHGGPTRG 121
P P G G + P PG G P +G
Sbjct: 71 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQG 104
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 52.4 bits (124), Expect = 2e-07
Identities = 42/99 (42%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 34 PIGPPSLLGPP--PMANGK------PGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGP 85
P GPP +GPP P A G PG + +GPPG GP PP S+P PP RGP
Sbjct: 822 PPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGP 881
Query: 86 IRRGL-GPRSSPYGRGWWGVNAE-----PPFPGPGHGGP 118
GL GP P G + N+E PP P PG GP
Sbjct: 882 PGEGLPGPPGPP---GSFLSNSETFLSGPPGP-PGPPGP 916
Score = 38.9 bits (89), Expect = 0.003
Identities = 47/181 (25%), Positives = 64/181 (35%), Gaps = 42/181 (23%)
Query: 2 PKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPP-------------PMAN 48
PK +K + P + P+ +R G P+GP GPP P +
Sbjct: 604 PKGQKGSVGDPG--MEGPMGQRGREG------PMGPRGEAGPPGSGEKGERGAAGEPGPH 655
Query: 49 GKPGDPKSALHRGPPGSRGPLIPP----------LLSLPPPPWGRGPIRRGLGPRSSPYG 98
G PG P S +G GS GP PP + LP +GP+ GP+
Sbjct: 656 GPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPP-GPKGDQGE 714
Query: 99 RGWWGVNAEPPFPG----------PGHGGPTRGSFHKEQRNPRRLKSWSLIKNTCPPKDD 148
+G G+ EP G G GP H+ R + L I+ P D
Sbjct: 715 KGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGD 774
Query: 149 P 149
P
Sbjct: 775 P 775
Score = 34.3 bits (77), Expect = 0.065
Identities = 39/123 (31%), Positives = 47/123 (38%), Gaps = 38/123 (30%)
Query: 12 PPTQQQPPLPE-------REETGDEEDGSPIGPPS---------LLGPPPMANGKPGDPK 55
PP + PP P R G+ G P GPP L GPP G PG P
Sbjct: 861 PPGPRGPPGPSIPGPPGPRGPPGEGLPGPP-GPPGSFLSNSETFLSGPP----GPPGPPG 915
Query: 56 SALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGH 115
+GPPG RG +G +GL P S G +G+N + P PG
Sbjct: 916 PKGDQGPPGPRG--------------HQG--EQGL-PGFSTSGSSSFGLNLQGPPGPPGP 958
Query: 116 GGP 118
GP
Sbjct: 959 QGP 961
Score = 33.1 bits (74), Expect = 0.14
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 36 GPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSS 95
G P + GPP +G PG P +GP G G P + P G+ G +
Sbjct: 761 GMPGIRGPPG-PSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTV 819
Query: 96 PYGRGWWGVNAEPPFPG-PGHGGPTRGSFHKEQRN 129
P G G P PG PG GP H+E N
Sbjct: 820 PGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLN 854
Score = 32.3 bits (72), Expect = 0.25
Identities = 36/98 (36%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 32 GSPIGPPSLLGPP-PMAN----GKPGDPKSALHRGP---PGSRGPLIPPLLSLPPPPWGR 83
GSP GP +G P P + G PG P H GP G +G + P + P GR
Sbjct: 567 GSP-GPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGR 625
Query: 84 -GPIRRGLGPR--SSPYGRGWWGVNAEPPFPGPGHGGP 118
GP +GPR + P G G G PGP HG P
Sbjct: 626 EGP----MGPRGEAGPPGSGEKGERGAAGEPGP-HGPP 658
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 44 PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWG 82
PP G+ G P GP G RGP PP PP P G
Sbjct: 1439 PPGQKGEMGTP------GPKGDRGPAGPPGHPGPPGPRG 1471
Score = 29.3 bits (64), Expect = 2.1
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 16 QQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPP 72
Q PP P + + G P G P LG P + G + GPPG GP PP
Sbjct: 950 QGPPGPPGPQGPKGDKGDP-GVPGALGIPS-GPSEGGSSSTMYVSGPPGPPGPPGPP 1004
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 52.0 bits (123), Expect = 3e-07
Identities = 45/113 (39%), Positives = 50/113 (44%), Gaps = 27/113 (23%)
Query: 12 PPTQ-QQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLI 70
PP+Q Q PP+P GPP L GPPP +P P + L GPP P
Sbjct: 398 PPSQIQAPPMP--------------GPPPL-GPPPAPPLRPPGPPTGLPPGPP----PGA 438
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPG--HGGPTRG 121
PP L P P RGP+ R L P P GR PP P PG G P RG
Sbjct: 439 PPFLRPPGMPGLRGPLPR-LLPPGPPPGR----PPGPPPGPPPGLPPGPPPRG 486
Score = 42.4 bits (98), Expect = 2e-04
Identities = 42/127 (33%), Positives = 44/127 (34%), Gaps = 28/127 (22%)
Query: 12 PPTQQQPPLPEREETGDEED---GSPIGPPSLLGPPPMAN-------------------G 49
PP PP P G G P G P L PP M G
Sbjct: 410 PPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPG 469
Query: 50 KPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGL--GPRSSPYGRGWWGVNAE 107
P P L GPP RGP PP L P PP G P R G+ P P G G+
Sbjct: 470 PPPGPPPGLPPGPP-PRGP--PPRLPPPAPP-GIPPPRPGMMRPPLVPPLGPAPPGLFPP 525
Query: 108 PPFPGPG 114
P P PG
Sbjct: 526 APLPNPG 532
>gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo
sapiens]
Length = 1048
Score = 50.4 bits (119), Expect = 9e-07
Identities = 53/190 (27%), Positives = 68/190 (35%), Gaps = 24/190 (12%)
Query: 9 HHQPPTQQQPPLPERE-ETGDEEDGS--------PIGPPSLLGPPPMANGKPGDPKSALH 59
HHQ P P PE E +T E DG P P PP ANG P P+ A
Sbjct: 189 HHQQPPHNSLPKPEPEAKTRGEGDGRGCEKAERRPERPEVKKEPPVKANGLPAGPEPASE 248
Query: 60 RGPPGSRGPLIPPLLSLPPPPWG---RGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHG 116
G P GP +P P P G P R G S G + PP P
Sbjct: 249 PGSPYPEGPRVPGGGEQPAQPNGWQYHSPSRPGSTAFPSQDGETGGHRRSFPPRTNPDKI 308
Query: 117 GPTRGSFHKEQRNPRRLKSWSLIKNTCPPKDDPQVMEDKSDRPVCR---HFAKKGHCRYE 173
+ S + +L+ W ++ PP +D + PV R + +Y
Sbjct: 309 AQRKSSMN-------QLQQWVNLRRGVPPPED--LRSPSRFYPVSRRVPEYYGPYSSQYP 359
Query: 174 DLCAFYHPGV 183
D +Y PGV
Sbjct: 360 DDYQYYPPGV 369
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 50.1 bits (118), Expect = 1e-06
Identities = 42/109 (38%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 27 GDEEDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPG---SRGPLIPPLL------- 74
G + D GPP L GP P A G PG A RG PG +RGP+ PP +
Sbjct: 407 GPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSK 466
Query: 75 ---SLPPPPWGRGPIRRGL-GPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
P PP G +GL GP P G G + EP PG PG GP
Sbjct: 467 GDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGP 515
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 34 PIGPPSLLGPPPMA----NGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG 89
P GP GPP + NG PG P RG PG GP+ PP PP RGP G
Sbjct: 207 PQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPP--GPQGPPGERGP--EG 262
Query: 90 LGPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
+G + G G+ PG PG GP
Sbjct: 263 IGKPGAAGAPGQPGIPGTKGLPGAPGIAGP 292
Score = 46.2 bits (108), Expect = 2e-05
Identities = 38/95 (40%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 34 PIGPPSLLGPP----PMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRG-PIRR 88
PIGPP GPP P GKPG + G PG++G P ++ PP P G G P
Sbjct: 245 PIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLP 304
Query: 89 GL----GPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
GL GP P G G G PG PG GP
Sbjct: 305 GLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGP 339
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/115 (34%), Positives = 45/115 (39%), Gaps = 28/115 (24%)
Query: 32 GSP--IGPPSLLGPP-------PMANGKPGDPKSALHRGP---------PGSRGPLIPPL 73
GSP G P L GPP P G PG P GP PG RGP PP
Sbjct: 86 GSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPP- 144
Query: 74 LSLPPPPWGRGPIRRG-LGPRSSPYGRGWWGVNAEPPFPG-------PGHGGPTR 120
+P P P + G GP +P RG+ G P PG G+G P R
Sbjct: 145 -GIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGR 198
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/130 (31%), Positives = 46/130 (35%), Gaps = 36/130 (27%)
Query: 12 PPTQQQPPLPEREETGDEEDGSP-----------------IGPPSLLGPP-PMANGKPGD 53
PP Q PP E G E G P G P + GPP P GKPG
Sbjct: 248 PPGPQGPP----GERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGL 303
Query: 54 PKSALHRGP------PGSRGPL----IPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWG 103
P RGP PG++G +P L PP GP GP+ P G G
Sbjct: 304 PGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGP----QGPKGIPGSHGLPG 359
Query: 104 VNAEPPFPGP 113
E GP
Sbjct: 360 PKGETGPAGP 369
Score = 35.8 bits (81), Expect = 0.022
Identities = 43/135 (31%), Positives = 47/135 (34%), Gaps = 34/135 (25%)
Query: 18 PPLP----EREETGDEEDGSPIGPPSLLGPP-------PMANGKPGDPKSALHRGPPGSR 66
P LP ER G + D P G P GPP P PG P G PG R
Sbjct: 111 PGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPR 170
Query: 67 G-------PLIPPL--------LSLPPPPWGRG-PIRRGLGPRSSPYGRGWWGVNAEPPF 110
G P +P + P P RG P +G S P G G G N P
Sbjct: 171 GFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQ 230
Query: 111 PG-------PGHGGP 118
PG PG GP
Sbjct: 231 PGIKGDRGFPGEMGP 245
Score = 35.0 bits (79), Expect = 0.038
Identities = 40/113 (35%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 27 GDEEDGSPIGPPSLLGP--PPMANGKPGDP-KSALH--RGPPGSRGPLIPPLLSLPP--- 78
G+ P G P G P ++GKPG P K L +G PG GP P + PP
Sbjct: 362 GETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLP 421
Query: 79 ----PPWGRG-PIRRG-LGPRSS---PYGRGWWGVNAEPPFPG----PGHGGP 118
P +G P G GPR + P RG G P FPG PG GP
Sbjct: 422 GPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGP 474
Score = 31.6 bits (70), Expect = 0.42
Identities = 34/114 (29%), Positives = 39/114 (34%), Gaps = 25/114 (21%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPP-PMANGKPGDPKSALHRGPPGSRGPLIP 71
P QQ P E G+P G P + G M G PG P GP G GP P
Sbjct: 158 PGQQGPTGAPGPRGFPGEKGAP-GVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGP 216
Query: 72 PLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-------PGHGGP 118
P G+G R G G+ + FPG PG GP
Sbjct: 217 P----------------GVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGP 254
Score = 30.4 bits (67), Expect = 0.94
Identities = 25/71 (35%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 49 GKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEP 108
G PG P A RG PG GP P P P +G P G G P
Sbjct: 60 GTPGPPGPAGPRGHPGPSGP--------PGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVP 111
Query: 109 PFPG-PGHGGP 118
PG PG GP
Sbjct: 112 GLPGKPGERGP 122
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 34 PIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPP 72
P GPP PP G G+P GPPG G + P
Sbjct: 488 PTGPPG----PPGPRGHSGEPGLPGPPGPPGPPGQAVMP 522
Score = 27.3 bits (59), Expect = 7.9
Identities = 37/120 (30%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 10 HQPPTQQQPPLPEREE------TGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPP 63
+Q PT + PLP + T + + G GPP A G G P + GPP
Sbjct: 25 YQMPTGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPA-GPRGHPGPS---GPP 80
Query: 64 GSRGPLIPPLLSLPPPPWGRGPIRRGL----GPRSSPYGRGWWGVNAE-PPFPGPGHGGP 118
G G P L P P GP G G P RG +G + P PG GP
Sbjct: 81 GKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGP 140
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.7 bits (117), Expect = 1e-06
Identities = 39/115 (33%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPP-----PMANGKPGDPKSALHRGPPGSRG 67
P+ P R GD + P GP GPP P A G+PGD + GPPG G
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845
Query: 68 PLIPPLLSLPPPPWGRGPIRRGLGPRSS---PYGRGWWGVNAEPPFPGP-GHGGP 118
P + PP P G G R S P G+ G PGP G+ GP
Sbjct: 846 P------AGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Score = 44.7 bits (104), Expect = 5e-05
Identities = 42/118 (35%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 22 EREETGDEEDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGP------LIPPL 73
++E TG E GP GP PP +G PG P GPPG GP P L
Sbjct: 104 DQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQL 163
Query: 74 -----------LSLPPPPWGRGPIRRGL-GPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
+S+P P GP RGL GP +P +G+ G EP PG G GP
Sbjct: 164 SYGYDEKSTGGISVPGPMGPSGP--RGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGP 219
Score = 42.7 bits (99), Expect = 2e-04
Identities = 37/97 (38%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 30 EDGSP--IGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPP-PPWGRG 84
E GSP G P +GP P G+PG P A RG G+ G PP + P PP G
Sbjct: 288 EPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPG 347
Query: 85 PI--RRGLGPRSSPYGRGWWGVNAEPPFPGP-GHGGP 118
+ + GP+ G GV EP PGP G GP
Sbjct: 348 AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGP 384
Score = 41.6 bits (96), Expect = 4e-04
Identities = 35/103 (33%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 22 EREETGDEEDGSPIGPPSLLGPP-PMAN-GKPGDPKSALHRGPPGSRG---------PLI 70
E + G + D P GP GPP P+ N G PG + GPPG+ G P
Sbjct: 828 EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P + PP P G G GPR G G P PGP
Sbjct: 888 PSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930
Score = 39.3 bits (90), Expect = 0.002
Identities = 37/116 (31%), Positives = 43/116 (37%), Gaps = 24/116 (20%)
Query: 12 PPTQQQPP------LPEREETGDEEDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPP 63
PP PP P+ DE+ I P +GP P G PG P +GPP
Sbjct: 146 PPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPP 205
Query: 64 GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
G P P GP +GPR P G G + E PG PG GP
Sbjct: 206 GE-----------PGEPGASGP----MGPRGPPGPPGKNGDDGEAGKPGRPGERGP 246
Score = 38.9 bits (89), Expect = 0.003
Identities = 46/142 (32%), Positives = 51/142 (35%), Gaps = 23/142 (16%)
Query: 12 PPTQQQPPLPEREETGDEEDGSP--IGPPSLLGP--------PPMANGKPGDPKSALHRG 61
PP PP E +GSP G P G PP A G PG P G
Sbjct: 1002 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 1061
Query: 62 PPGSRGPLIPPLLSLPPPPWG-RGPI----RRG-------LGPRSSPYGRGWWGVNAEPP 109
G RG P + P P G RGP RG G R RG+ G+ P
Sbjct: 1062 KSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPG 1121
Query: 110 FPG-PGHGGPTRGSFHKEQRNP 130
PG PG GP+ S R P
Sbjct: 1122 PPGSPGEQGPSGASGPAGPRGP 1143
Score = 38.9 bits (89), Expect = 0.003
Identities = 39/116 (33%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGP---PSLLGPPPMANGKPGDPKSALHRGPPGSRGPL 69
P Q P ++ ETG++ D G L GPP G PG P G G GP
Sbjct: 1086 PAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPP----GPPGSPGEQGPSGASGPAGPR 1141
Query: 70 IPPLLSLPPPPWGRGPIRRGLGPRSSPYGR-GWWGVNAEPPFPG-PGHGGPTRGSF 123
PP + P G + +GP P GR G G P PG PG GP F
Sbjct: 1142 GPPGSAGAPGKDGLNGLPGPIGP-PGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGF 1196
Score = 37.4 bits (85), Expect = 0.008
Identities = 39/117 (33%), Positives = 45/117 (38%), Gaps = 21/117 (17%)
Query: 11 QPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPP--PMANGKPGD------PKSALHRGP 62
Q P + P R E G P GP GP P A+G+PG P A G
Sbjct: 358 QGPRGSEGPQGVRGEPG------PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGF 411
Query: 63 PGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEP-PFPGPGHGGP 118
PG+RGP P PP P G G +P +G G EP P G GP
Sbjct: 412 PGARGPSGPQGPGGPPGPKGNS------GEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462
Score = 36.2 bits (82), Expect = 0.017
Identities = 39/118 (33%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPP-----------PMANGKPGDPKSALHR 60
P Q PP P EE G P GP L GPP P A+G G A R
Sbjct: 453 PVGVQGPPGPAGEEGKRGARGEP-GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER 511
Query: 61 GPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGP 118
G PG GP P + P G + G SP G G PP P G P
Sbjct: 512 GSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG----PPGPAGQDGRP 565
Score = 36.2 bits (82), Expect = 0.017
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 18 PPLPEREETGDEEDGS--PIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLS 75
PP P +E G G P G P +GPP G P A +G PG+ GP P
Sbjct: 897 PPGPAGKEGGKGPRGETGPAGRPGEVGPP-------GPPGPAGEKGSPGADGPAGAPGTP 949
Query: 76 LPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTRG 121
P G+ + G R G G + EP GP RG
Sbjct: 950 GPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERG 995
Score = 36.2 bits (82), Expect = 0.017
Identities = 42/134 (31%), Positives = 48/134 (35%), Gaps = 37/134 (27%)
Query: 18 PPLPEREETGDEEDGSPIGPPSLLGPPPMAN--------------------------GKP 51
PP P E+ DG P G P GP +A GK
Sbjct: 927 PPGPAGEKGSPGADG-PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ 985
Query: 52 GDPKSALHRGPPGSRGPLIPPLLSLPPPPWGR--GPIRRGLGPRSSPYG----RGWWGVN 105
G ++ RGPPG P+ PP L+ PP GR P G R G RG G
Sbjct: 986 GPSGASGERGPPG---PMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA 1042
Query: 106 AEPPFPG-PGHGGP 118
P PG PG GP
Sbjct: 1043 GPPGAPGAPGAPGP 1056
Score = 35.4 bits (80), Expect = 0.029
Identities = 34/101 (33%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 34 PIGPPSLLGPPPMAN-----GKPGDPKSALHRGPPGSRGPLIPP-------LLSLPPPPW 81
P GP L GPP G PG+P GP G RGP PP P P
Sbjct: 183 PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPG 242
Query: 82 GRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG----PGHGGP 118
RGP G R P G G+ F G G GP
Sbjct: 243 ERGP-PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 282
Score = 35.4 bits (80), Expect = 0.029
Identities = 34/108 (31%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIP 71
P + PP P G + P GPP G + G PG +A G G RG P
Sbjct: 549 PDGKTGPPGP----AGQDGRPGPPGPPGARGQAGVM-GFPGPKGAAGEPGKAGERGVPGP 603
Query: 72 PLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
P P G + GP RG G P F G PG GP
Sbjct: 604 PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP 651
Score = 33.9 bits (76), Expect = 0.085
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 36 GPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWG----RG----P 85
GP GP PP G G+P + +G G++G P + PP P G RG P
Sbjct: 416 GPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP 475
Query: 86 IRRGL----GPRSSPYGRGWWGVN--AEPPFPGPGHGGP 118
GL G R P RG+ G + A P P G P
Sbjct: 476 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSP 514
Score = 33.9 bits (76), Expect = 0.085
Identities = 30/89 (33%), Positives = 33/89 (37%), Gaps = 24/89 (26%)
Query: 16 QQPPLP-----EREETGDEEDGSPIGPPS------------LLGP--PPMANGKPGDPKS 56
Q PP P E+ +G P GPP L GP PP G+ GD
Sbjct: 1117 QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGP 1176
Query: 57 ALHRGPPGSRGPLIPPLLS-----LPPPP 80
GPPG GP PP LP PP
Sbjct: 1177 VGPPGPPGPPGPPGPPSAGFDFSFLPQPP 1205
Score = 31.2 bits (69), Expect = 0.55
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 19 PLPEREETGDE-EDGSP--IGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPLIPPL 73
P +R + G + DGSP G L GP PP G PGD + GP G G P
Sbjct: 741 PKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG 800
Query: 74 LSLPPPPWGRGPIRRGLGPRSSPYGRGWWG-VNAEPPFPGPGHGGP 118
P P G G P +G G A+ PG GP
Sbjct: 801 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 846
Score = 30.8 bits (68), Expect = 0.72
Identities = 34/110 (30%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLL---- 74
P R E G + GPP GP ANG PG+ + G PG+ G P L
Sbjct: 672 PSGARGERGFPGERGVQGPPGPAGPRG-ANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 730
Query: 75 ------SLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNA-EPPFPGPGHGG 117
LP P RG GP+ + G GV P PG G
Sbjct: 731 GERGAAGLPGPKGDRG----DAGPKGADGSPGKDGVRGLTGPIGPPGPAG 776
Score = 30.0 bits (66), Expect = 1.2
Identities = 36/111 (32%), Positives = 43/111 (38%), Gaps = 33/111 (29%)
Query: 30 EDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPL----------IPPLLSLP-- 77
E G P GPP +GP GK G+ + +GPPG GP P LP
Sbjct: 597 ERGVP-GPPGAVGPA----GKDGEAGA---QGPPGPAGPAGERGEQGPAGSPGFQGLPGP 648
Query: 78 --PPPWGRGPIRRGL-GPRSSPYGRGWWGVNAEPPFPG-------PGHGGP 118
PP P +G+ G +P G G E FPG PG GP
Sbjct: 649 AGPPGEAGKPGEQGVPGDLGAP---GPSGARGERGFPGERGVQGPPGPAGP 696
Score = 27.7 bits (60), Expect = 6.1
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 30 EDGSPIGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIR 87
E G P G L G P P +GK G P A G PG G PP G+ +
Sbjct: 531 EAGLP-GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG---------PPGARGQAGVM 580
Query: 88 RGLGPRSSPYGRGWWGVNAEPPFPG 112
GP+ + G G P PG
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPG 605
Score = 27.3 bits (59), Expect = 7.9
Identities = 32/103 (31%), Positives = 36/103 (34%), Gaps = 21/103 (20%)
Query: 27 GDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPL-IPPLLSLPPPPWGRGP 85
G + D P GP G+PG P G PG GP +P P P G
Sbjct: 275 GAKGDAGPAGP----------KGEPGSPGE---NGAPGQMGPRGLPGERGRPGAP-GPAG 320
Query: 86 IRRGLGPRSSPYGRGWWGVNAEPPFPG----PGHGGP--TRGS 122
R G + G G P FPG G GP RGS
Sbjct: 321 ARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGS 363
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 49.7 bits (117), Expect = 1e-06
Identities = 38/123 (30%), Positives = 47/123 (38%), Gaps = 7/123 (5%)
Query: 2 PKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKS--ALH 59
P+ Q+H PP +P P + G++ G P P GPPP K +S
Sbjct: 125 PQGGNQSHRPPPPPGKPERPP-PQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKP 183
Query: 60 RGPPGSRG--PLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGH 115
+GPP G P PP P PPP G P + P P G PP P G
Sbjct: 184 QGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQGQ 243
Query: 116 GGP 118
P
Sbjct: 244 QPP 246
Score = 43.1 bits (100), Expect = 1e-04
Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 4 RKKQNHHQPPTQQQPPLPEREET-----GDEEDGSPIGPPSLLGPPPMANGK-------P 51
R+ Q +QP Q+ PP P + + G++ G P P G PP + P
Sbjct: 39 RRPQGGNQP--QRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHP 96
Query: 52 GDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVN---AEP 108
G P+ +G S+G PP PPP G R P P G N P
Sbjct: 97 GKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPP 156
Query: 109 PFPGPGHGGPTR-GSFHKEQRNP 130
P PG G P + G+ + R+P
Sbjct: 157 PHPGKPEGPPPQEGNKSRSARSP 179
Score = 33.9 bits (76), Expect = 0.085
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPPPMANGK-------PGDPKSALHRGPPGSRGPLIP 71
P R + G++ P P GPPP + PG P+ +G S+GP
Sbjct: 36 PEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPH 95
Query: 72 PLLSLPPPPWGRGPIRRGL----GPRSSPYGRGWWGVNAEPPFPGPGHGGPTRG 121
P PPP G G +G G P +G + PP PG P +G
Sbjct: 96 PGKPERPPPQG-GNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQG 148
Score = 28.9 bits (63), Expect = 2.7
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 52 GDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVN---AEP 108
G P+ +G + P PP PPP G + P P GR G N P
Sbjct: 34 GKPEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPP 93
Query: 109 PFPGPGHGGPTRGSFHKEQRNP 130
P PG P +G + P
Sbjct: 94 PHPGKPERPPPQGGNQSQGTPP 115
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 49.3 bits (116), Expect = 2e-06
Identities = 39/97 (40%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 25 ETGDEEDGSPIGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPLIPP----LLSLPP 78
E GD D P G P G P P G PGD A RG PGSRGP+ PP LP
Sbjct: 1066 ERGDRGDPGPAGLPGSQGAPGTPGPVGAPGD---AGQRGDPGSRGPIGPPGRAGKRGLPG 1122
Query: 79 PPWGRGP--IRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P RG G R RG+ G+ P PGP
Sbjct: 1123 PQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGP 1159
Score = 40.8 bits (94), Expect = 7e-04
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 34 PIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRG-----PLIPPLLSLPPP---PWGRGP 85
P+ PP P + + PG + RG G +G P++ + P P P +GP
Sbjct: 85 PVTPPGECCP--VCSQTPGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGP 142
Query: 86 IRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
R GP+ P RG G++ EP PG PG GP
Sbjct: 143 -RGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGP 175
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/97 (35%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 25 ETGDEEDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWG 82
E G P GP G PP G PG P + G PG++GP P S PP
Sbjct: 388 EAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTS--GPPGS 445
Query: 83 RGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
GP GP+ S +G G +P PG G GP
Sbjct: 446 AGP-PGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGP 481
Score = 38.5 bits (88), Expect = 0.003
Identities = 39/125 (31%), Positives = 44/125 (35%), Gaps = 22/125 (17%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPL 69
PP Q P R E G + P GP + G P P G PG P H GP G P
Sbjct: 136 PPGSQGP----RGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPF 191
Query: 70 IPPLLSLPPP----------PWGRGPI--RRGLGPRSSPYGRGWWGVNAEPPFPGP---- 113
+ L P GP+ R G + G G G EP PGP
Sbjct: 192 SAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPI 251
Query: 114 GHGGP 118
G GP
Sbjct: 252 GSRGP 256
Score = 37.4 bits (85), Expect = 0.008
Identities = 51/176 (28%), Positives = 61/176 (34%), Gaps = 28/176 (15%)
Query: 22 EREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPW 81
+R E G P G P +GP A G G P GPPGS GP+ P P P
Sbjct: 1000 QRGERGMPGLPGPAGTPGKVGPTG-ATGDKGPPGPV---GPPGSNGPVGEP---GPEGPA 1052
Query: 82 GRG--PIRRGL----GPRSSPYGRGWWGVNAEPPFPG----PGHGGPTRGSFHKEQRNPR 131
G P R G G R P G G P PG PG G + P
Sbjct: 1053 GNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPP 1112
Query: 132 RLKSWSLIKNTCPPKDDPQVMEDKSDRPVCRHFAKKGHCRYEDLCAFYHPGVNGPP 187
+ P+ D D+ DR +KGH + L G+ GPP
Sbjct: 1113 GRAGKRGLPGPQGPRGDKGDHGDRGDR------GQKGHRGFTGL-----QGLPGPP 1157
Score = 37.0 bits (84), Expect = 0.010
Identities = 36/101 (35%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 34 PIGPPSLLGPPPMAN--GKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLG 91
P GP L G A G PG+P GP GSRGP PP GR +G
Sbjct: 220 PRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVG 279
Query: 92 PRSSPYGRGWWGVNAEPPFPG-PGHGGPTRGSFHKEQRNPR 131
SP RG+ G P PG GH G HK P+
Sbjct: 280 FAGSPGARGFPGA---PGLPGLKGHRG------HKGLEGPK 311
Score = 37.0 bits (84), Expect = 0.010
Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 36 GPPSLLGPPPMAN--GKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPR 93
GPP G P A G PG + GP G G PP L P GR R GP
Sbjct: 903 GPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPP 962
Query: 94 SSPYGRGWWGVNAEP-PFPGPGHGGPT 119
P +G G + +P P PG G T
Sbjct: 963 GGPGDKGDPGEDGQPGPDGPPGPAGTT 989
Score = 36.6 bits (83), Expect = 0.013
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 16/111 (14%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPP-----PMANGKPGDPKSALHRGPPGSRGPLIPPL 73
P R G + P G GP P G+PG+P G PG +G L
Sbjct: 826 PPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQG-----L 880
Query: 74 LSLPPP--PWGRGPIRRGLGPRSSPYGRGWWG----VNAEPPFPGPGHGGP 118
P P P G ++ G G + P G+ G V P PG GP
Sbjct: 881 AGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGP 931
Score = 36.2 bits (82), Expect = 0.017
Identities = 37/118 (31%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 11 QPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPM--ANGKPGDPKSALHRGPPGSRG- 67
Q P Q E E G + D GP L G P NG PG +GPPG+ G
Sbjct: 851 QGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGF 910
Query: 68 PLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG----PGHGGPTRG 121
P + P P GP GP P G G+ +P G G GP G
Sbjct: 911 PGSAGRVGPPGPAGAPGP----AGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGG 964
Score = 33.9 bits (76), Expect = 0.085
Identities = 38/125 (30%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPPPMANG--------KPGDPKSALHRGPPGSRG-PL 69
PL R E G+ + G L G MA G PG + GPPG +G P
Sbjct: 706 PLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPG 765
Query: 70 IPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEP-PFPGPGHGGPTRGSFHKEQR 128
+ P P RG G+G + + G G P P PG GPT K +
Sbjct: 766 ERGIAGTPGPKGDRG----GIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG---EKGEP 818
Query: 129 NPRRL 133
PR L
Sbjct: 819 GPRGL 823
Score = 33.5 bits (75), Expect = 0.11
Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 11/116 (9%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGD------PKSALHRGPPGSR 66
P PL R G+ P G P G M GKPG P S+ G PG +
Sbjct: 328 PMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMP-GKPGPMGPLGIPGSSGFPGNPGMK 386
Query: 67 GPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEP----PFPGPGHGGP 118
G P P P G+ GP SP G G + P P PG GP
Sbjct: 387 GEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGP 442
Score = 33.5 bits (75), Expect = 0.11
Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 34/113 (30%)
Query: 27 GDEEDGSPIGPPSLLGPP--------------PMANGKPGDPKSALHRGPPGSRGPL--- 69
G+E P G P +GPP P ++G PG + RGP GS GP
Sbjct: 498 GEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQ 557
Query: 70 ----------IPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG 112
+P L P +GP + LGP +P G + P PG
Sbjct: 558 GDPGRPGEPGLPGARGLTGNPGVQGPEGK-LGPLGAP------GEDGRPGPPG 603
Score = 33.5 bits (75), Expect = 0.11
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 34 PIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPR 93
P+GPP GP G+ G+P GPPGSRG P P G GP
Sbjct: 802 PLGPPGPAGP----TGEKGEPGPRGLVGPPGSRG---NPGSRGENGPTGAVGFAGPQGPD 854
Query: 94 SSPYGRGWWGVNAEPPFPG 112
P GV EP PG
Sbjct: 855 GQP------GVKGEPGEPG 867
Score = 33.1 bits (74), Expect = 0.14
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 24/116 (20%)
Query: 18 PPLPEREETGDEEDGSP-----IGPPSLLGPPPMANGKPGDPKSALHRG----------- 61
PP E+ +G+P G P G P G PG P HRG
Sbjct: 259 PPGKPGEDGEPGRNGNPGEVGFAGSPGARGFP----GAPGLPGLKGHRGHKGLEGPKGEV 314
Query: 62 -PPGSRGPLIP--PLLSLPP-PPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
PGS+G P P+ ++ P P G R LGP+ +P RG G+ +P GP
Sbjct: 315 GAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGP 370
Score = 33.1 bits (74), Expect = 0.14
Identities = 33/124 (26%), Positives = 43/124 (34%), Gaps = 18/124 (14%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGP-----------PPMANGKPGDPKSALHRG 61
PT + P + + G+ P+G P L G P + G G P SA G
Sbjct: 391 PTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPG 450
Query: 62 PPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEP-------PFPGPG 114
PG +G P + P G + GP+ P G G P P PG
Sbjct: 451 SPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPG 510
Query: 115 HGGP 118
GP
Sbjct: 511 TVGP 514
Score = 33.1 bits (74), Expect = 0.14
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 36 GPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRG-PIRRG-LG 91
GP LGP P +G+PG P S RG PGS G LP P G P + G G
Sbjct: 582 GPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMG--------LPGPKGSSGDPGKPGEAG 633
Query: 92 PRSSPYGRGWWGVNAEPPFPGP 113
P RG G + E GP
Sbjct: 634 NAGVPGQRGAPGKDGEVGPSGP 655
Score = 32.7 bits (73), Expect = 0.19
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 25/111 (22%)
Query: 27 GDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPL----------------I 70
G + P G P GPP + G PG+ A GP G RG + +
Sbjct: 741 GPKGSPGPSGTPGDTGPPGL-QGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGL 799
Query: 71 PPLLSLPPPPWGRG----PIRRGL----GPRSSPYGRGWWGVNAEPPFPGP 113
P L P P G P RGL G R +P RG G F GP
Sbjct: 800 PGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGP 850
Score = 31.6 bits (70), Expect = 0.42
Identities = 35/105 (33%), Positives = 42/105 (40%), Gaps = 29/105 (27%)
Query: 32 GSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG 89
G P GP + GP PP GK RGP G G + PP GP+
Sbjct: 483 GEP-GPHGIQGPIGPPGEEGK---------RGPRGDPGTVGPP-----------GPV--- 518
Query: 90 LGPRSSPYGRGWWGVNAEP-PFPGPGHGGPTRGSFHK-EQRNPRR 132
G R +P RG+ G + P P G GP S K Q +P R
Sbjct: 519 -GERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGR 562
Score = 31.6 bits (70), Expect = 0.42
Identities = 36/108 (33%), Positives = 41/108 (37%), Gaps = 32/108 (29%)
Query: 27 GDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRG-- 84
G+ P+GPP L G G+ G P GP G +G L PP P G G
Sbjct: 648 GEVGPSGPVGPPGLAGE----RGEQGPP------GPTGFQG------LPGPPGPPGEGGK 691
Query: 85 PIRRG----------LGPRSSPYGRGWWGVNAEPPFPG-PGHGGPTRG 121
P +G LGPR RG G EP G PG G G
Sbjct: 692 PGDQGVPGDPGAVGPLGPRGE---RGNPGERGEPGITGLPGEKGMAGG 736
Score = 31.6 bits (70), Expect = 0.42
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 26 TGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGP 85
+G E + P+GP +GPP G G A GPPG GP P PP G
Sbjct: 1184 SGKEGNPGPLGP---IGPP----GVRGSVGEAGPEGPPGEPGP--------PGPPGPPGH 1228
Query: 86 IRRGLG 91
+ LG
Sbjct: 1229 LTAALG 1234
Score = 30.8 bits (68), Expect = 0.72
Identities = 32/99 (32%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 22 EREETGDEEDGSPIGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPP 79
ER G G P G P P A G G+P +GP G GPL P P
Sbjct: 544 ERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGV---QGPEGKLGPLGAPGEDGRPG 600
Query: 80 PWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGG 117
P G +G R P G G PG PG G
Sbjct: 601 PPG------SIGIRGQPGSMGLPGPKGSSGDPGKPGEAG 633
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 48.5 bits (114), Expect = 3e-06
Identities = 41/120 (34%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 17 QPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP-GDPKSALHRGPP----GSRGPLIP 71
Q P P+ G++ G P P GPPP KP G P +GPP SR P P
Sbjct: 37 QGPSPQG---GNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP 93
Query: 72 PLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTR-GSFHKEQRNP 130
P PPP G P +G P+ +G PP PG G P + GS + R+P
Sbjct: 94 PGKPQGPPPQGGKP--QGPPPQGGNKPQG-------PPPPGKPQGPPAQGGSKSQSARSP 144
Score = 44.7 bits (104), Expect = 5e-05
Identities = 37/127 (29%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Query: 12 PPTQQQPPLPEREETGDEED--GSPIGPPSL----LGPPPMANGKP-GDPKSALHRGPPG 64
PP + Q P P+ +++ G P GPP GPPP KP G P +GPP
Sbjct: 73 PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPA 132
Query: 65 SRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTRGSFH 124
G S P P G P + G P+ P G + P G G P
Sbjct: 133 QGGSKSQSARSPPGKPQG-PPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGG 191
Query: 125 KEQRNPR 131
+ R P+
Sbjct: 192 RPSRPPQ 198
Score = 42.4 bits (98), Expect = 2e-04
Identities = 41/130 (31%), Positives = 47/130 (36%), Gaps = 34/130 (26%)
Query: 5 KKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDP---------K 55
K ++ PP + Q P P+ G P GPP G P PG P K
Sbjct: 86 KSRSPRSPPGKPQGPPPQ--------GGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSK 137
Query: 56 SALHRGPPGSRGPLIPPLL-----SLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPF 110
S R PPG P PP PPPP G P + P P G PP
Sbjct: 138 SQSARSPPGK--PQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQG---------PPR 186
Query: 111 PGPGHGGPTR 120
P P G P+R
Sbjct: 187 P-PQGGRPSR 195
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/127 (29%), Positives = 44/127 (34%), Gaps = 15/127 (11%)
Query: 5 KKQNHHQPPTQQQPPLPE--REETGDEEDGSPIGPP-------SLLGPPPMANGKPGDPK 55
K Q PP + Q P P+ + G G P GPP S PP G P P+
Sbjct: 46 KPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQ 103
Query: 56 SALHRGPP--GSRGPLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFP 111
+GPP G P PP P PP G + P P G N P
Sbjct: 104 GGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP 163
Query: 112 GPGHGGP 118
P G P
Sbjct: 164 PPAGGNP 170
Score = 29.6 bits (65), Expect = 1.6
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 30 EDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG 89
ED S PSL+ G+P+ +G +GP PP PPP G G +G
Sbjct: 21 EDVSQEESPSLIA---------GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQG-GNKPQG 70
Query: 90 LGPRSSPYGRGWWGVNAEPPF--PGPGHGGPTRG 121
P P G G + P PG G P +G
Sbjct: 71 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQG 104
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 48.5 bits (114), Expect = 3e-06
Identities = 44/136 (32%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
Query: 4 RKKQNHHQPPTQQQPPLPEREET-----GDEEDGSPIGPPSLLGPPPMANG-------KP 51
R+ Q +QP Q+ PP P + E G++ G P P GPPP +P
Sbjct: 39 RRPQGGNQP--QRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRP 96
Query: 52 GDPKSALHRGPPGSRGPLIPPLLSLP--PPPWG----RGPIRRGLGPRSSPYGRGWWGVN 105
G P+ +G S+GP PP P PPP G +GP R G P +G
Sbjct: 97 GKPEGQPPQGGNQSQGP--PPRPGKPEGPPPQGGNQSQGPPPRP-GKPEGPPPQGGNQSQ 153
Query: 106 AEPPFPGPGHGGPTRG 121
PP PG G P +G
Sbjct: 154 GPPPRPGKPEGPPPQG 169
Score = 45.8 bits (107), Expect = 2e-05
Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANG-------KPGDPKSALHRGPPG 64
PP + P + + G++ G P P GPPP +PG P+ +G
Sbjct: 92 PPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQ 151
Query: 65 SRGPLIPPLLSLP--PPPWG----RGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGP 118
S+GP PP P PPP G +GP G P +G PP PG G P
Sbjct: 152 SQGP--PPRPGKPEGPPPQGGNQSQGPPPHP-GKPEGPPPQGGNQSQGPPPRPGKPEGPP 208
Query: 119 TRGSFHKEQRNPR 131
+G + PR
Sbjct: 209 PQGGNQSQGPPPR 221
Score = 43.1 bits (100), Expect = 1e-04
Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 2 PKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRG 61
P+ Q+ PP +P P + G++ G P P GPPP KP P
Sbjct: 209 PQGGNQSQGPPPRPGKPEGPP-SQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPP------ 261
Query: 62 PPG-SRGPLIP---PLLSLPPP---PWGRGPIRRGLGPRSSPYGR 99
PPG +GP P P LPPP P G P +G P P G+
Sbjct: 262 PPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRPPQGQ 306
Score = 41.2 bits (95), Expect = 5e-04
Identities = 38/125 (30%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 2 PKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP--GDPKSALH 59
P+ Q+ PP +P P + G++ G P P GPP KP P
Sbjct: 188 PQGGNQSQGPPPRPGKPEGPP-PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKP 246
Query: 60 RGPPGSRG--PLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGH 115
+GPP G P PP P PPP G P + P P G P P P
Sbjct: 247 QGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQG----------PPPPPQG 296
Query: 116 GGPTR 120
G P R
Sbjct: 297 GRPHR 301
Score = 29.3 bits (64), Expect = 2.1
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 27/91 (29%)
Query: 43 PPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLP--PPPWGRGPIRRGLGPRSSPYGRG 100
PPP PG P+ +G S+GP PP P PPP G + GP
Sbjct: 51 PPP-----PGKPEGRPPQGGNQSQGP--PPRPGKPEGPPPQGGN---QSQGP-------- 92
Query: 101 WWGVNAEPPFPGPGHGGPTRGSFHKEQRNPR 131
PP PG G P +G + PR
Sbjct: 93 -------PPRPGKPEGQPPQGGNQSQGPPPR 116
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.1 bits (113), Expect = 4e-06
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 18/134 (13%)
Query: 12 PPTQQQPPLPEREE-TGDEEDGSPIGPPSLLGPPPMANGKPGDPK-------------SA 57
PP +PP+P + + P PPS GPPP+ G+ + S
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSST 345
Query: 58 LHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGG 117
PG GPL PP PPPP P R G P P R A P P
Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQL---- 401
Query: 118 PTRGSFHKEQRNPR 131
P+R + PR
Sbjct: 402 PSRSGVDSPRSGPR 415
Score = 41.2 bits (95), Expect = 5e-04
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 12/115 (10%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPP---------SLLGPPPMANGKPGDPKSALHRGPP 63
P +PPLP ++ P PP + PPP N KP P + R
Sbjct: 245 PFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKP--PVPSTPRPSA 302
Query: 64 GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGP 118
S+ P PP S P PP P G R ++ PP P PG GP
Sbjct: 303 SSQAPPPPPPPSRPGPP-PLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGP 356
Score = 38.9 bits (89), Expect = 0.003
Identities = 39/126 (30%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 1 MPK-RKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLG--PPPMANGKPGDPKSA 57
MPK R N +PPL G P PPS G P P + G P+
Sbjct: 108 MPKLRSTANRDNDSGGSRPPL--LPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQ 165
Query: 58 LHRGPP-----GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG 112
+R PP GS+ IPP + P P +SSP+ RG V P P
Sbjct: 166 RNRMPPPRPDVGSKPDSIPPPVPSTPRPI-----------QSSPHNRGSPPVPGGPRQPS 214
Query: 113 PGHGGP 118
PG P
Sbjct: 215 PGPTPP 220
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 1 MPKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGK-----PGDP- 54
+P + PP ++PP P R+ G P+ PP PP NG P P
Sbjct: 348 LPSPGRSGPLPPPPSERPPPPVRDPPG---RSGPLPPP----PPVSRNGSTSRALPATPQ 400
Query: 55 ---KSALHRGPPGSRGPLIP--PLLSLPPPPWGRGPIRRGLGPRSSPYGRGW 101
+S + G R PL P P PPPP IR G + SP W
Sbjct: 401 LPSRSGVDSPRSGPRPPLPPDRPSAGAPPPPPPSTSIRNGF--QDSPCEDEW 450
Score = 32.0 bits (71), Expect = 0.32
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRG-PPGSRGPLI 70
P + PP P+R P S+ PPP+ + S +RG PP GP
Sbjct: 155 PGHRSGPPEPQRNRMPPPRPDVGSKPDSI--PPPVPSTPRPIQSSPHNRGSPPVPGGPRQ 212
Query: 71 PPLLSLPPP-PWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P PPP P RG G R SP N P P P
Sbjct: 213 PSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTP 256
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.1 bits (113), Expect = 4e-06
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 18/134 (13%)
Query: 12 PPTQQQPPLPEREE-TGDEEDGSPIGPPSLLGPPPMANGKPGDPK-------------SA 57
PP +PP+P + + P PPS GPPP+ G+ + S
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSST 345
Query: 58 LHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGG 117
PG GPL PP PPPP P R G P P R A P P
Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQL---- 401
Query: 118 PTRGSFHKEQRNPR 131
P+R + PR
Sbjct: 402 PSRSGVDSPRSGPR 415
Score = 41.2 bits (95), Expect = 5e-04
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 12/115 (10%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPP---------SLLGPPPMANGKPGDPKSALHRGPP 63
P +PPLP ++ P PP + PPP N KP P + R
Sbjct: 245 PFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKP--PVPSTPRPSA 302
Query: 64 GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGP 118
S+ P PP S P PP P G R ++ PP P PG GP
Sbjct: 303 SSQAPPPPPPPSRPGPP-PLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGP 356
Score = 38.9 bits (89), Expect = 0.003
Identities = 39/126 (30%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 1 MPK-RKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLG--PPPMANGKPGDPKSA 57
MPK R N +PPL G P PPS G P P + G P+
Sbjct: 108 MPKLRSTANRDNDSGGSRPPL--LPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQ 165
Query: 58 LHRGPP-----GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG 112
+R PP GS+ IPP + P P +SSP+ RG V P P
Sbjct: 166 RNRMPPPRPDVGSKPDSIPPPVPSTPRPI-----------QSSPHNRGSPPVPGGPRQPS 214
Query: 113 PGHGGP 118
PG P
Sbjct: 215 PGPTPP 220
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 1 MPKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGK-----PGDP- 54
+P + PP ++PP P R+ G P+ PP PP NG P P
Sbjct: 348 LPSPGRSGPLPPPPSERPPPPVRDPPG---RSGPLPPP----PPVSRNGSTSRALPATPQ 400
Query: 55 ---KSALHRGPPGSRGPLIP--PLLSLPPPPWGRGPIRRGLGPRSSPYGRGW 101
+S + G R PL P P PPPP IR G + SP W
Sbjct: 401 LPSRSGVDSPRSGPRPPLPPDRPSAGAPPPPPPSTSIRNGF--QDSPCEDEW 450
Score = 32.0 bits (71), Expect = 0.32
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRG-PPGSRGPLI 70
P + PP P+R P S+ PPP+ + S +RG PP GP
Sbjct: 155 PGHRSGPPEPQRNRMPPPRPDVGSKPDSI--PPPVPSTPRPIQSSPHNRGSPPVPGGPRQ 212
Query: 71 PPLLSLPPP-PWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P PPP P RG G R SP N P P P
Sbjct: 213 PSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTP 256
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.8 bits (112), Expect = 6e-06
Identities = 42/110 (38%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 16 QQPPLPEREETGDEEDGSPIGPPSL-----LGPPPMANGKPGDP---KSALHRGPPGSRG 67
Q PP P GD+ D P GP L G PP NGKPG+P A G PG +G
Sbjct: 617 QGPPGPTGPG-GDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKG 675
Query: 68 PLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGG 117
P PP G +R G GP G+G A PP P PG G
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKG----AAGPPGP-PGAAG 720
Score = 46.6 bits (109), Expect = 1e-05
Identities = 46/125 (36%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 2 PKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPP-PMA----NGKPGDPKS 56
P K Q P PL TG P G P G P P +GKPG
Sbjct: 929 PGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGL 988
Query: 57 ALHRGPPGSRGPLIPPLLSLPPPPWGRG-PIRRGL-GPRSSPYGRGWWGVNAEPPFPG-P 113
+ RGPPG +G +P L P G P GL G SP G+G G N P PG P
Sbjct: 989 SGERGPPGPQG--LPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAP 1046
Query: 114 GHGGP 118
GH GP
Sbjct: 1047 GHPGP 1051
Score = 44.7 bits (104), Expect = 5e-05
Identities = 34/86 (39%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 34 PIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPR 93
P GPP GPP +G PG P S ++GPPG G P P PP GP GP
Sbjct: 175 PAGPPGPPGPPG-TSGHPGSPGSPGYQGPPGEPGQAGPS--GPPGPPGAIGP----SGPA 227
Query: 94 SSPYGRGWWGVNAEPPFPG-PGHGGP 118
G G E PG PG GP
Sbjct: 228 GKDGESGRPGRPGERGLPGPPGIKGP 253
Score = 44.3 bits (103), Expect = 6e-05
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 23 REETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWG 82
R G+ + P GP G P G+ G+P RG PG +G PP + PP G
Sbjct: 794 RGSPGERGETGPPGPAGFPGAP----GQNGEPGGKGERGAPGEKGEGGPP--GVAGPPGG 847
Query: 83 RGPI----RRGL-GPRSSPYGRGWWGVNAEPPFPGP----GHGGP 118
GP +G+ G R SP G G G PGP G+ GP
Sbjct: 848 SGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGP 892
Score = 42.7 bits (99), Expect = 2e-04
Identities = 39/116 (33%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMA-----NGKPGDPKSALHRGPPGSRG 67
P Q PP E G P GPP +GP A +G+PG P GPPG +G
Sbjct: 197 PGYQGPP----GEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKG 252
Query: 68 PLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGR-GWWGVNAEPPFPG----PGHGGP 118
P +P P +G RG R+ G G G+ E PG PG GP
Sbjct: 253 P-----AGIPGFPGMKG--HRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGP 301
Score = 42.7 bits (99), Expect = 2e-04
Identities = 42/128 (32%), Positives = 46/128 (35%), Gaps = 28/128 (21%)
Query: 18 PPLPEREETGDEEDGSPIGPPSLLGPP--------------PMANGKPGDPKSALHRGPP 63
PP PE G + P GPP G P P G G+P G P
Sbjct: 700 PPGPE----GGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755
Query: 64 GSRGPLIPPLLSLPPPPWGR--------GPIRRGL-GPRSSPYGRGWWGVNAEPPFPG-P 113
G GP P PP P G+ P G+ GPR SP RG G FPG P
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815
Query: 114 GHGGPTRG 121
G G G
Sbjct: 816 GQNGEPGG 823
Score = 42.4 bits (98), Expect = 2e-04
Identities = 36/103 (34%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 34 PIGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLG 91
PIGPP G P G PG P A RG PG RG PP + P G+ G G
Sbjct: 766 PIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKG 825
Query: 92 PRSSPYGRGWWGVNAEPPFPGPGHGGPTRGSFHKEQRNPRRLK 134
R +P +G G PG GP GS P+ +K
Sbjct: 826 ERGAPGEKGEGG--------PPGVAGPPGGSGPAGPPGPQGVK 860
Score = 41.2 bits (95), Expect = 5e-04
Identities = 40/112 (35%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 22 EREETGDE----EDGSP--IGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRG------ 67
E+ ETG E+G P G P +GP P G+PG P +A RG G+RG
Sbjct: 274 EKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPG 333
Query: 68 -PLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP-GHGG 117
P P P P +G + GP SP G G E PGP GH G
Sbjct: 334 PPGPPGTAGFPGSPGAKGEV----GPAGSPGSNGAPGQRGE---PGPQGHAG 378
Score = 40.0 bits (92), Expect = 0.001
Identities = 38/109 (34%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 31 DGSPIGPPSLLGPP-----PMANGKPGDPKS---ALHRGPPGSRGPLIPPLLSLPPPPWG 82
DG P G P + G P P ++GKPG P S + GPPG GP P + P P G
Sbjct: 527 DGVP-GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKG 585
Query: 83 RGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP-GHGGPTRGSFHKEQRNP 130
G R P G G G + GP G GPT K P
Sbjct: 586 NDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGP 634
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/121 (33%), Positives = 50/121 (41%), Gaps = 23/121 (19%)
Query: 12 PPTQQQPPLPEREETGDEEDGSP--------IGPPSLLGPPPMANGKPGDPKSALHRGPP 63
PP P P +DG P G P + GP A G+PG+ S +GPP
Sbjct: 883 PPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDA-GQPGEKGSPGAQGPP 941
Query: 64 GSRGPL----IPPLLSLPPPPWGRGPIRRGL-GPRSSPYGRGWWGVNAEPPFPG-PGHGG 117
G+ GPL I L PP G+ GPR SP +G G + +P G G G
Sbjct: 942 GAPGPLGIAGITGARGLAGPP--------GMPGPRGSPGPQGVKGESGKPGANGLSGERG 993
Query: 118 P 118
P
Sbjct: 994 P 994
Score = 39.3 bits (90), Expect = 0.002
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIP 71
PP P P + E GSP GP + P A G PG P S + GPPG G
Sbjct: 844 PPGGSGPAGPPGPQGVKGERGSPGGPGA--AGFPGARGLPGPPGSNGNPGPPGPSG---S 898
Query: 72 PLLSLPPPPWGR--GPIRRGL----GPRSSPYGRGWWGVNAEPPFPGP 113
P PP P G P G+ G P +G G P PGP
Sbjct: 899 PGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP 946
Score = 38.9 bits (89), Expect = 0.003
Identities = 38/120 (31%), Positives = 46/120 (38%), Gaps = 19/120 (15%)
Query: 11 QPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPG--SRGP 68
QPPT P + G + D P G P G P G PG P S GPPG P
Sbjct: 90 QPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDP----GIPGQPGSPGSPGPPGICESCP 145
Query: 69 LIPPLLSLPPPPWGRGPIRRGL---------GPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
P S P + ++ G+ GP P G G + P PG PG+ GP
Sbjct: 146 TGPQNYS---PQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGP 202
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/92 (39%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 31 DGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGL 90
DG P GPP GPP A G PG P + GP GS G P P P G +
Sbjct: 329 DGQP-GPP---GPPGTA-GFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPP 383
Query: 91 GP---RSSPYGRGWWGVNAEPPFPG-PGHGGP 118
GP SP G+G G P PG G GP
Sbjct: 384 GPPGINGSPGGKGEMGPAGIPGAPGLMGARGP 415
Score = 37.4 bits (85), Expect = 0.008
Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 17 QPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGP---PGSRGPLIPPL 73
Q P ++ ETG+ G G P G PG P A +G PG GP P
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNP----GAPGSPGPAGQQGAIGSPGPAGPRGPVG 1143
Query: 74 LSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
S PP G +GP RG G P PG PG GP
Sbjct: 1144 PSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGP 1189
Score = 36.6 bits (83), Expect = 0.013
Identities = 40/112 (35%), Positives = 44/112 (39%), Gaps = 23/112 (20%)
Query: 19 PLPEREETG----------DEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGP 68
P ER E G D +DGSP P ANG PG +A RG PG RGP
Sbjct: 445 PRGERGEAGIPGVPGAKGEDGKDGSP--------GEPGANGLPG---AAGERGAPGFRGP 493
Query: 69 LIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGH-GGP 118
P + P G GPR + G GV P G PG GGP
Sbjct: 494 AGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Score = 32.3 bits (72), Expect = 0.25
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 48 NGKPGDPKSALHRGPPGSRGPL----------IPPLLSLPPPPWGRG-PIRRG-LGPRSS 95
NG PG P + H GPPG GP P P RG P +G G +
Sbjct: 1037 NGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGE 1096
Query: 96 PYGRGWWGVNAEPPFPG----PGHGGP 118
RG G+ FPG PG GP
Sbjct: 1097 TGERGAAGIKGHRGFPGNPGAPGSPGP 1123
Score = 31.2 bits (69), Expect = 0.55
Identities = 36/123 (29%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMAN-----GKPGDPKSALHRGPPGSRG 67
P Q+ P P+ G P GPP + G P G PG P RGPPG G
Sbjct: 365 PGQRGEPGPQ----GHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAG 420
Query: 68 PLIPPLLSLPPPPWGRGPIRRGLGPRSS---------PYGRGWWGVNAEPPFPG----PG 114
P L G+ + GPR P +G G + P PG PG
Sbjct: 421 ANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPG 480
Query: 115 HGG 117
G
Sbjct: 481 AAG 483
Score = 31.2 bits (69), Expect = 0.55
Identities = 36/107 (33%), Positives = 41/107 (38%), Gaps = 20/107 (18%)
Query: 30 EDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPLIPP----LLSLP----PP 79
E G P GP GP PP NG+ G GP G +G PP L LP PP
Sbjct: 595 ERGGPGGP----GPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPP 650
Query: 80 -----PWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTRG 121
P GP + G +P G+G G E PG RG
Sbjct: 651 GENGKPGEPGP-KGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRG 696
Score = 31.2 bits (69), Expect = 0.55
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGP--------PPMANGKPGDPKSALHRGPPG 64
P QQ + G P GPP G PP G G+ S G PG
Sbjct: 1123 PAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPG 1182
Query: 65 SRGPLIPPLLSLPPPPWGRGPIRRGLG 91
GP P PP GP G+G
Sbjct: 1183 QPGP--------PGPPGAPGPCCGGVG 1201
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 47.8 bits (112), Expect = 6e-06
Identities = 55/164 (33%), Positives = 62/164 (37%), Gaps = 46/164 (28%)
Query: 12 PPTQQQPPLPEREE--------TGDEEDGSPIGPPSLLGPP--PMANGKPGDPKSALHRG 61
PP +Q PP P GD P GPP G P P A GKPG P + G
Sbjct: 270 PPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTG 329
Query: 62 PPGSRG----------PLIP-----PLLSLPPPPWGRG----PIRRG-LGPRSSPYGRGW 101
P GS G P +P P +P PP G P G +GP P RG
Sbjct: 330 PDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRG- 388
Query: 102 WGVNAEPPFPGPGHGGPTRGSFHKEQRNPRRLKSWSLIKNTCPP 145
PP P PG GP RG+ +P L N CPP
Sbjct: 389 ------PPGP-PGPPGP-RGTIGFHDGDP-------LCPNACPP 417
Score = 36.6 bits (83), Expect = 0.013
Identities = 35/103 (33%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMAN--GKPGDPKSALHRGPPGSRGPLI 70
P PP P E + G G P + GPP G GD RGPPG +
Sbjct: 795 PGPPGPPGPPGENGFPGQMGIR-GLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGL 853
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P + LP P GP G R RG GV P PGP
Sbjct: 854 PGAIGLPGDP---GPASYGRNGRDGE--RGPPGVAGIPGVPGP 891
Score = 35.0 bits (79), Expect = 0.038
Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 17/115 (14%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPM--------ANGKPGDPKSALHRGPP 63
P T+ +P P G D G P + G P + G PG P + G P
Sbjct: 552 PGTKGEPGKP-----GPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKP 606
Query: 64 GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGG 117
G +GP P P P G R LGP SP G G P PG PG G
Sbjct: 607 GQQGP---PGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPG 658
Score = 34.7 bits (78), Expect = 0.050
Identities = 34/85 (40%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 36 GPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG--LGPR 93
GPP GPP A G PG+ G PG RGP PP PP P G G L P
Sbjct: 361 GPP---GPPGTA-GLPGELGRVGPVGDPGRRGPPGPP---GPPGPRGTIGFHDGDPLCPN 413
Query: 94 SSPYGRGWWGVNAEPPFPG-PGHGG 117
+ P GR + P PG GH G
Sbjct: 414 ACPPGRSGY-----PGLPGMRGHKG 433
Score = 32.3 bits (72), Expect = 0.25
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 60 RGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGG 117
RGPPG +GP PP PP G I GP+ P G G +P PG PG G
Sbjct: 268 RGPPGEQGPPGPP---GPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPG 323
Score = 29.6 bits (65), Expect = 1.6
Identities = 37/110 (33%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 16 QQPPLPE--REETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPL---- 69
Q PP + R TG D G L G P G PG P RGPPG GP
Sbjct: 462 QGPPGAQGLRGITGIVGDKGEKGARGLDGEPG-PQGLPGAPGDQGQRGPPGEAGPKGDRG 520
Query: 70 ------IPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
IP L P P G + G P G G EP PGP
Sbjct: 521 AEGARGIPGL----PGPKGDTGLPGVDGRDGIP---GMPGTKGEPGKPGP 563
Score = 29.3 bits (64), Expect = 2.1
Identities = 35/132 (26%), Positives = 43/132 (32%), Gaps = 30/132 (22%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP---------------GDPKS 56
PP PP P T DG P+ P + PP +G P G+P
Sbjct: 389 PPGPPGPPGPRG--TIGFHDGDPLCPNAC---PPGRSGYPGLPGMRGHKGAKGEIGEPGR 443
Query: 57 ALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG---- 112
H+G G +G L PP G I +G + RG G PG
Sbjct: 444 QGHKGEEGDQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGD 503
Query: 113 ------PGHGGP 118
PG GP
Sbjct: 504 QGQRGPPGEAGP 515
Score = 29.3 bits (64), Expect = 2.1
Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPP 78
P P+ E+ E+G G LG G PG SA + G PG RGP LP
Sbjct: 672 PGPKGEQGASGEEGEA-GERGELGDI----GLPGPKGSAGNPGEPGLRGP--EGSRGLPG 724
Query: 79 PPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPT 119
RGP GPR +G G P GP PT
Sbjct: 725 VEGPRGP----PGPRGV---QGEQGATGLPGVQGPPGRAPT 758
Score = 28.1 bits (61), Expect = 4.7
Identities = 33/93 (35%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 39 SLLGPPPMANGKPGDPKSALHRGPPGSRGPLIP--------PLLSLPPPPWG-RGPIRRG 89
SL P A G PG P GPPG G P P + PP G RGP +
Sbjct: 780 SLKRPDSGATGLPGRPGPPGPPGPPGENG--FPGQMGIRGLPGIKGPPGALGLRGP-KGD 836
Query: 90 LGPRS--SPYGRGWWGVNAE---PPFPGPGHGG 117
LG + P GRG G+ P PGP G
Sbjct: 837 LGEKGERGPPGRGPNGLPGAIGLPGDPGPASYG 869
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 47.8 bits (112), Expect = 6e-06
Identities = 55/164 (33%), Positives = 62/164 (37%), Gaps = 46/164 (28%)
Query: 12 PPTQQQPPLPEREE--------TGDEEDGSPIGPPSLLGPP--PMANGKPGDPKSALHRG 61
PP +Q PP P GD P GPP G P P A GKPG P + G
Sbjct: 27 PPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTG 86
Query: 62 PPGSRG----------PLIP-----PLLSLPPPPWGRG----PIRRG-LGPRSSPYGRGW 101
P GS G P +P P +P PP G P G +GP P RG
Sbjct: 87 PDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRG- 145
Query: 102 WGVNAEPPFPGPGHGGPTRGSFHKEQRNPRRLKSWSLIKNTCPP 145
PP P PG GP RG+ +P L N CPP
Sbjct: 146 ------PPGP-PGPPGP-RGTIGFHDGDP-------LCPNACPP 174
Score = 36.6 bits (83), Expect = 0.013
Identities = 35/103 (33%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMAN--GKPGDPKSALHRGPPGSRGPLI 70
P PP P E + G G P + GPP G GD RGPPG +
Sbjct: 552 PGPPGPPGPPGENGFPGQMGIR-GLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGL 610
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P + LP P GP G R RG GV P PGP
Sbjct: 611 PGAIGLPGDP---GPASYGRNGRDGE--RGPPGVAGIPGVPGP 648
Score = 35.0 bits (79), Expect = 0.038
Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 17/115 (14%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPM--------ANGKPGDPKSALHRGPP 63
P T+ +P P G D G P + G P + G PG P + G P
Sbjct: 309 PGTKGEPGKP-----GPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKP 363
Query: 64 GSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGG 117
G +GP P P P G R LGP SP G G P PG PG G
Sbjct: 364 GQQGP---PGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPG 415
Score = 34.7 bits (78), Expect = 0.050
Identities = 34/85 (40%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 36 GPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG--LGPR 93
GPP GPP A G PG+ G PG RGP PP PP P G G L P
Sbjct: 118 GPP---GPPGTA-GLPGELGRVGPVGDPGRRGPPGPP---GPPGPRGTIGFHDGDPLCPN 170
Query: 94 SSPYGRGWWGVNAEPPFPG-PGHGG 117
+ P GR + P PG GH G
Sbjct: 171 ACPPGRSGY-----PGLPGMRGHKG 190
Score = 33.5 bits (75), Expect = 0.11
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 57 ALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGH 115
A RGPPG +GP PP PP G I GP+ P G G +P PG PG
Sbjct: 22 AAQRGPPGEQGPPGPP---GPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGT 78
Query: 116 GG 117
G
Sbjct: 79 PG 80
Score = 29.6 bits (65), Expect = 1.6
Identities = 37/110 (33%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 16 QQPPLPE--REETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPL---- 69
Q PP + R TG D G L G P G PG P RGPPG GP
Sbjct: 219 QGPPGAQGLRGITGIVGDKGEKGARGLDGEPG-PQGLPGAPGDQGQRGPPGEAGPKGDRG 277
Query: 70 ------IPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
IP L P P G + G P G G EP PGP
Sbjct: 278 AEGARGIPGL----PGPKGDTGLPGVDGRDGIP---GMPGTKGEPGKPGP 320
Score = 29.3 bits (64), Expect = 2.1
Identities = 35/132 (26%), Positives = 43/132 (32%), Gaps = 30/132 (22%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKP---------------GDPKS 56
PP PP P T DG P+ P + PP +G P G+P
Sbjct: 146 PPGPPGPPGPRG--TIGFHDGDPLCPNAC---PPGRSGYPGLPGMRGHKGAKGEIGEPGR 200
Query: 57 ALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG---- 112
H+G G +G L PP G I +G + RG G PG
Sbjct: 201 QGHKGEEGDQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGD 260
Query: 113 ------PGHGGP 118
PG GP
Sbjct: 261 QGQRGPPGEAGP 272
Score = 29.3 bits (64), Expect = 2.1
Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPP 78
P P+ E+ E+G G LG G PG SA + G PG RGP LP
Sbjct: 429 PGPKGEQGASGEEGEA-GERGELGDI----GLPGPKGSAGNPGEPGLRGP--EGSRGLPG 481
Query: 79 PPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPT 119
RGP GPR +G G P GP PT
Sbjct: 482 VEGPRGP----PGPRGV---QGEQGATGLPGVQGPPGRAPT 515
Score = 28.1 bits (61), Expect = 4.7
Identities = 33/93 (35%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 39 SLLGPPPMANGKPGDPKSALHRGPPGSRGPLIP--------PLLSLPPPPWG-RGPIRRG 89
SL P A G PG P GPPG G P P + PP G RGP +
Sbjct: 537 SLKRPDSGATGLPGRPGPPGPPGPPGENG--FPGQMGIRGLPGIKGPPGALGLRGP-KGD 593
Query: 90 LGPRS--SPYGRGWWGVNAE---PPFPGPGHGG 117
LG + P GRG G+ P PGP G
Sbjct: 594 LGEKGERGPPGRGPNGLPGAIGLPGDPGPASYG 626
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 47.8 bits (112), Expect = 6e-06
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIP- 71
P QQPP P ++ ++ P + P P KP P L R PG LIP
Sbjct: 233 PLPQQPPAPANQDQNSSQNTRLQPTPPIPAPAP----KPAAPPRPLDRESPGVENKLIPS 288
Query: 72 ---PLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P S P PP G GP +P +G +A+P P P
Sbjct: 289 VGSPASSTPLPPDGTGPNSTPNNRAVTPVSQGSNSSSADPKAPPP 333
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 47.8 bits (112), Expect = 6e-06
Identities = 42/110 (38%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 12 PPTQQQPPLP----EREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRG 67
P P LP ER TG D GPP G P A G PG P RG GS G
Sbjct: 1056 PGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPG-ATGPPGLPGIKGERGYTGSAG 1114
Query: 68 ----PLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P P LP PP GP R GP+ + +G G +P FPGP
Sbjct: 1115 EKGEPGPPGSEGLPGPPGPAGP-RGERGPQGNSGEKGDQGFQGQPGFPGP 1163
Score = 43.9 bits (102), Expect = 8e-05
Identities = 42/124 (33%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 21 PEREET-GDEEDGSP--IGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPL-IPPLL 74
P EE GD +G P +G P L GPP P G+ G P GPPG GP P +
Sbjct: 1000 PRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAV 1059
Query: 75 SLPPPPWGRGPIRRGL-------GPRSSPYGRGWWGVNAEPPFPG-PGHGGPTRGSFHKE 126
P P +G RGL G P G+ G P PG G G T + K
Sbjct: 1060 GSPGLPGLQG--ERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKG 1117
Query: 127 QRNP 130
+ P
Sbjct: 1118 EPGP 1121
Score = 40.4 bits (93), Expect = 0.001
Identities = 36/119 (30%), Positives = 41/119 (34%), Gaps = 39/119 (32%)
Query: 31 DGSPIGPPSLLGPP-----------------------------PMANGKPGDPKSALHRG 61
D P GPP L+GPP P A G+PG G
Sbjct: 1229 DPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPG 1288
Query: 62 PPGSRGPLIPPLLSLPPPPWGRGPIR-RGLGPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
PPG GP P PP GP +G + G G+ P PG PGH GP
Sbjct: 1289 PPGHVGP--------PGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGP 1339
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/123 (32%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPL- 69
P ++ P E GD+ G P GPP P G PG P +G G RGP
Sbjct: 1136 PRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSG 1195
Query: 70 IPPLLSLPPPPWGRGPIRRGL----------GPRSSPYGRGWWGVNAEPPFPG----PGH 115
+P P PP +GP GL G R P G G+ P F G PG
Sbjct: 1196 LPGSPGPPGPPGIQGP--AGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGL 1253
Query: 116 GGP 118
GP
Sbjct: 1254 PGP 1256
Score = 37.7 bits (86), Expect = 0.006
Identities = 38/114 (33%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPP 72
P Q P P+ G++ DG PSL G G+PG P +GP G P P
Sbjct: 708 PGVQGPAGPK----GEKGDGCT-ACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKP- 761
Query: 73 LLSLPPPPWGRGPI-RRGLGPRSSPYGRGWWGVNAEPPFPG-------PGHGGP 118
P P +GP +G+ P GRG G EP PG PG GP
Sbjct: 762 --GQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGP 813
Score = 36.2 bits (82), Expect = 0.017
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 15 QQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRG---PLIP 71
Q +P P R G + + G P + G P G PG +G PG +G P+ P
Sbjct: 779 QGEPGPPGRGVQGPQGEPGAPGLPGIQGLPG-PRGPPGPTGEKGAQGSPGVKGATGPVGP 837
Query: 72 PLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEP 108
P S+ PP GR + G R +P +G G EP
Sbjct: 838 PGASVSGPP-GRDGQQGQTGLRGTPGEKGPRGEKGEP 873
Score = 36.2 bits (82), Expect = 0.017
Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 32 GSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLG 91
G P GPP GPP G+PG +A GPPG +G PP P G+ G
Sbjct: 1329 GQP-GPPGHPGPP----GEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKG 1383
Query: 92 PRSSPYGRGWWGVNAEPPFPGP----GHGG 117
P G G G PGP GH G
Sbjct: 1384 RAGMPGGPGKSGSMGPVGPPGPAGERGHPG 1413
Score = 35.4 bits (80), Expect = 0.029
Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 32 GSPIGPPSLLGP--------------PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLP 77
GSP GPP +GP P ++N + GD + GP G +G PP LP
Sbjct: 611 GSP-GPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLP 669
Query: 78 PPPWGRGPIRRGL----GPRSSPYGRGWWGVNAEPPFPG-PGHGGP 118
G RGL G +P G G P G PG GP
Sbjct: 670 GKQGKAG--ERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGP 713
Score = 30.0 bits (66), Expect = 1.2
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 23/95 (24%)
Query: 36 GPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSS 95
G P +GP +A G+P GPPG GP P + LP P G GP
Sbjct: 435 GDPGFVGPEGLA----GEP------GPPGLPGP---PGIGLPGTPGDPG------GP--- 472
Query: 96 PYGRGWWGVNAEPPFPGPGHGGPTRGSFHKEQRNP 130
P +G G + P GPG G P + E+ +P
Sbjct: 473 PGPKGDKGSSGIPGKEGPG-GKPGKPGVKGEKGDP 506
Score = 29.3 bits (64), Expect = 2.1
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 31/118 (26%)
Query: 44 PPMANGKPGDPKSALHRGPPGSRG----PLIPPLLSLPPPPWGRGPIRRGL--------- 90
PP +G PG P + G PG G +P + LP +G I G+
Sbjct: 1477 PPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGP 1536
Query: 91 -GPRSSP-YGR----GWWGVNAEPPFPGP----------GHGGPTR--GSFHKEQRNP 130
GP+ P YG+ G G P PGP GH P+ G+ EQ+ P
Sbjct: 1537 PGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYP 1594
Score = 28.1 bits (61), Expect = 4.7
Identities = 38/137 (27%), Positives = 40/137 (29%), Gaps = 31/137 (22%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMAN----------------------- 48
PP P E E G P GPP +GPP
Sbjct: 1265 PPGSTGRPGAEGEPGAMGPQGRP-GPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERG 1323
Query: 49 --GKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWG-RGPIRRGLGPRSSPYGRGWWGVN 105
G PG P H GPPG G PP G GP GP+ P G G
Sbjct: 1324 LAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGP----PGPKGDPGAAGQKGQA 1379
Query: 106 AEPPFPGPGHGGPTRGS 122
E G G GS
Sbjct: 1380 GEKGRAGMPGGPGKSGS 1396
Score = 27.7 bits (60), Expect = 6.1
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 6 KQNHHQPPTQQQPP--LPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPP 63
KQ + PP + P ++ + G++ G P G + G G P A RG P
Sbjct: 1357 KQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSG----SMGPVGPPGPAGERGHP 1412
Query: 64 GSRGPLIPPLLSLPPPPWGRG 84
G+ GP P LP P G
Sbjct: 1413 GAPGPSGSP--GLPGVPGSMG 1431
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 47.8 bits (112), Expect = 6e-06
Identities = 35/87 (40%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 12 PPTQQQPPLPEREE--TGDEEDGSPIGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRG 67
PP PP P TG P GPP PP PMA PG P + L GPP +
Sbjct: 298 PPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMAPL 357
Query: 68 PLIPPLLSLPPPPWGRGPIRRGLGPRS 94
P PP+ LPP GP L PRS
Sbjct: 358 PPGPPMAPLPP-----GPPMAPLPPRS 379
Score = 42.0 bits (97), Expect = 3e-04
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGP-------PPMANGKPGDPKSALHRGPPG 64
PP + P+P P+ P P PPMA PG P + + GPP
Sbjct: 277 PPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPM 336
Query: 65 SRGPLIPPLLSLPPPP 80
+R P PP+ LPP P
Sbjct: 337 ARVPPGPPMAPLPPGP 352
Score = 38.9 bits (89), Expect = 0.003
Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 11 QPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLI 70
+PP PP+P R PI P PPMA PG + + GP + P
Sbjct: 243 RPPVLPVPPMPPRPPMVPMPPRPPIAPM-----PPMAPVPPGSRMAPVPPGPRMAPVPPW 297
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPF----PGP 113
PP+ +PP P P+ G P G V PP PGP
Sbjct: 298 PPMAPVPPWP-PMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGP 343
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 47.4 bits (111), Expect = 7e-06
Identities = 45/134 (33%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDP-----------KSALHR 60
PP + PP P TG PP PP + NG P P ++LHR
Sbjct: 227 PPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNG-PSSPTNESAPELPQRHNSLHR 285
Query: 61 GPPGSRGPLIPP--------LLSLPPPPWGRGPIRRGLG-PRSSPYGRGWWGVNAEPPFP 111
PG L PP LLS PPP R P RG P P R G PP P
Sbjct: 286 KTPGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRN--GARDAPPPP 343
Query: 112 GP----GHGGPTRG 121
P G P+RG
Sbjct: 344 PPYRMHGSEPPSRG 357
Score = 39.7 bits (91), Expect = 0.002
Identities = 47/174 (27%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 13 PTQQQPPLPE------REETGDEEDGSPIGPPS----LLGPP---PMANGK--------- 50
P Q+P LP+ TG + S PP PP PM + K
Sbjct: 149 PRMQRPSLPDLSRPNTTSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYNREKP 208
Query: 51 -PGDPKSALHRGPPGSRGPLIPPLLSLPPPPWG--RGPIRRGLGPRSSPYGRGWWGVNAE 107
P P LH PG GP PP + PP P GP + L P PY +
Sbjct: 209 LPPTPGQRLH---PGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPY--------RQ 257
Query: 108 PPFPGPGHGGPTRGSFHK--EQRNPRRLKSWSLIKNTCPPKDDPQVMEDKSDRP 159
PP G PT S + ++ N K+ ++ PP S+RP
Sbjct: 258 PPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLLSNRP 311
Score = 34.7 bits (78), Expect = 0.050
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 12 PPTQ--QQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPL 69
PP++ PP P G + P P + G P + GKP P S GPP
Sbjct: 318 PPSRGAAPPPPPPVIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPP------ 371
Query: 70 IPPLLSLPPPPWGRG 84
PP PPPP G
Sbjct: 372 -PP----PPPPLRNG 381
Score = 31.6 bits (70), Expect = 0.42
Identities = 27/89 (30%), Positives = 29/89 (32%), Gaps = 16/89 (17%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGK----PGDPKSALHRGPPGSRG 67
PPT P L D G PP + NG P P +H P SRG
Sbjct: 298 PPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRMHGSEPPSRG 357
Query: 68 PLIPPLLSLPPPPWGRGPIRRGLGPRSSP 96
PPPP P R GP P
Sbjct: 358 K--------PPPP----PSRTPAGPPPPP 374
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 47.0 bits (110), Expect = 1e-05
Identities = 35/89 (39%), Positives = 39/89 (43%), Gaps = 20/89 (22%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIP 71
PPT + PP P R GPP PPP A G+ G L PPG+ GP +P
Sbjct: 353 PPTPRGPPPPGRG-----------GPPP---PPPPATGRSGP----LPPPPPGAGGPPMP 394
Query: 72 PLLSLPPPP--WGRGPIRRGLGPRSSPYG 98
P PPPP G GP L P P G
Sbjct: 395 PPPPPPPPPPSSGNGPAPPPLPPALVPAG 423
Score = 45.8 bits (107), Expect = 2e-05
Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 43 PPPMANGKPGDPKSALHRGPPGSRGPLIP-PLLSLPPPPWGRGPIRRGLG--PRSSPYGR 99
PPP + G P+ + G G GPL P PL PPPP RGP G G P P
Sbjct: 316 PPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPPPAT 375
Query: 100 GWWGVNAEPPFPGPGHGGP 118
G G PP PG GGP
Sbjct: 376 GRSGPLPPPP---PGAGGP 391
Score = 27.7 bits (60), Expect = 6.1
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSAL----HRGPPGSRG 67
PP PP P + P PP+L+ P PG + AL +G ++
Sbjct: 391 PPMPPPPPPPPPPPSSGNGPAPPPLPPALV---PAGGLAPGGGRGALLDQIRQGIQLNKT 447
Query: 68 PLIPPLLSLPPPP 80
P P +L PPP
Sbjct: 448 PGAPESSALQPPP 460
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 47.0 bits (110), Expect = 1e-05
Identities = 43/143 (30%), Positives = 50/143 (34%), Gaps = 29/143 (20%)
Query: 2 PKRKKQNHHQPPTQQQPPLPEREETGD------------------EEDGSPIGPPSLLGP 43
P + H QP QQQPP P ++ + P PP+ P
Sbjct: 83 PPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAP 142
Query: 44 PPMANGKPGDPKSALHRGPPG--------SRGPLIPPLLSLPPPPWGRGPIRRGLGPRSS 95
P G P A+ PPG S P PP PPPP P G GP+
Sbjct: 143 PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVP-GPGPGPKQG 201
Query: 96 PYGRGWWGVNAEPPFPGPGHGGP 118
P G G P P PG GGP
Sbjct: 202 P-GPGGPKGGKMPGGPKPG-GGP 222
Score = 41.2 bits (95), Expect = 5e-04
Identities = 36/111 (32%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 11 QPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRG--P 68
QPP QQ PP + P PP P +A G PG P + PP S P
Sbjct: 76 QPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQG-PG-PAPGVGSAPPASSSAPP 133
Query: 69 LIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPT 119
PP PP G GP GP +P PP P G PT
Sbjct: 134 ATPPTSGAPP---GSGP-----GPTPTPPPAVTSAPPGAPPPTPPSSGVPT 176
Score = 35.8 bits (81), Expect = 0.022
Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLL---GPPPMANGKPGDPKSA-LHRGPPGSRG 67
PPT +P T + G P PP+ + GP P PG PK + GP G
Sbjct: 166 PPTPPSSGVP----TTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGG 221
Query: 68 PLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPG 114
P + P PP G RG PY + + PP GPG
Sbjct: 222 PGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQH---HQGPPPGGPG 265
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 46.6 bits (109), Expect = 1e-05
Identities = 43/129 (33%), Positives = 50/129 (38%), Gaps = 23/129 (17%)
Query: 13 PTQQQPPLP--EREETGDEEDGSPIGPPSLLGPP--------------PMANGKPGDPKS 56
P + PP P ER E G+ GPP GPP P G PG+P
Sbjct: 1296 PGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGP 1355
Query: 57 ALHRGPPGSRGPLIPPLLSLPPPPWGR-----GPIRRGLGPRSSPYGR-GWWGVNAEPPF 110
A GPPG +G P + P P G P +RG + P GR G G E
Sbjct: 1356 AGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGL 1415
Query: 111 PG-PGHGGP 118
G PG GP
Sbjct: 1416 EGPPGKTGP 1424
Score = 43.9 bits (102), Expect = 8e-05
Identities = 44/126 (34%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 6 KQNHHQPPTQQQPPLPERE--ETGDEEDGSPIG------PPSLLGP--PPMANGKPGDPK 55
++ H P PP P + E GD+ + P G P LLGP PP G PG P
Sbjct: 641 EKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPP---GPPGPPG 697
Query: 56 SALHRGPPGSRGPLIPPLLSLPPPPWGRG-PIRRGL-GPRSSPYGRGWWGVNAEPPFPG- 112
G PG +G + P P PP +G P +GL GP+ + G G +P PG
Sbjct: 698 VTGMDGQPGPKGNVGPQ--GEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGM 755
Query: 113 PGHGGP 118
PG GP
Sbjct: 756 PGADGP 761
Score = 42.7 bits (99), Expect = 2e-04
Identities = 44/139 (31%), Positives = 49/139 (35%), Gaps = 41/139 (29%)
Query: 18 PPLPEREE--TGDEEDGSPIGPPSLLGPP-----------------------------PM 46
PP P E+ G + G P G P LGPP P
Sbjct: 833 PPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPG 892
Query: 47 ANGK------PGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRG 100
ANG+ PG P RGP G RG P ++ P P G G GP P RG
Sbjct: 893 ANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNS---GGDGPAGPPGERG 949
Query: 101 WWGVNAEPPFPGP-GHGGP 118
G FPGP G GP
Sbjct: 950 PNGPQGPTGFPGPKGPPGP 968
Score = 42.0 bits (97), Expect = 3e-04
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLG--PPPMANGKPGDPKSALHRGPPGSRGPLI 70
P QQ ++ + G P GP L G PP G+ GD GPPG RGP
Sbjct: 1202 PRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSG 1261
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGP 118
P P P G G+G + +G G EP PG GGP
Sbjct: 1262 APGADGPQGPPG------GIGNPGAVGEKGEPGEAGEPGL--PGEGGP 1301
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/128 (32%), Positives = 49/128 (38%), Gaps = 29/128 (22%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPP--PMANGKPG------DPKSALHRGPPGSRGPLI 70
P E+ ETGD P GPP GP P A+G G +P + +G PG G
Sbjct: 1235 PPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPG 1294
Query: 71 PPLLSLPP-------------------PPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFP 111
P PP PP +GP GP+ SP G+ G P P
Sbjct: 1295 LPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDD-GPKGSPGPVGFPGDPGPPGEP 1353
Query: 112 GP-GHGGP 118
GP G GP
Sbjct: 1354 GPAGQDGP 1361
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/115 (33%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 25 ETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPP-------LLSLP 77
+ G + D IGPP P P PK GP G GPL PP + LP
Sbjct: 821 DMGIKGDRGEIGPPG-----PRGEDGPEGPKG--RGGPNGDPGPLGPPGEKGKLGVPGLP 873
Query: 78 PPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP-GHGGPTRGSFHKEQRNPR 131
P +GP + +G P G G P PGP G GPT + +R PR
Sbjct: 874 GYPGRQGP-KGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTG---PRGERGPR 924
Score = 38.9 bits (89), Expect = 0.003
Identities = 39/124 (31%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 12 PPTQQQPPLPEREETGDEEDGSP--------IGPPSLLGPPPMAN-----GKPGDPKSAL 58
P Q PP + ++ + GSP GPP GPP A G+ G A
Sbjct: 1355 PAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAG 1414
Query: 59 HRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPR---SSPYGRGWWGVNAEPPFPG-PG 114
GPPG GP+ P P P G I +G + SP G G P PG G
Sbjct: 1415 LEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKG 1474
Query: 115 HGGP 118
GP
Sbjct: 1475 DSGP 1478
Score = 38.1 bits (87), Expect = 0.004
Identities = 34/98 (34%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 34 PIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIR------ 87
P GP L G P G G P S +G PG GP P + PP P G+ R
Sbjct: 560 PAGPMGLTGRP----GPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSD 615
Query: 88 --RGLGPRSSPYG-RGWWGVNAEPPFPG----PGHGGP 118
RG+ ++ P G RG+ G+ P G PG GP
Sbjct: 616 GARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGP 653
Score = 37.7 bits (86), Expect = 0.006
Identities = 42/136 (30%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 27 GDEEDGSPIGPPSLLGP-----PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPW 81
G+ P GP GP PP +G PG P G G GP PP + P P
Sbjct: 946 GERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPT 1005
Query: 82 GR-GPI--RRGLGPRSSPYGRGWWGVNAEPPFPG-------PGHGGP--TRGSFHKEQRN 129
G GP+ R GP P +G G+ + G PG GP RG F ++
Sbjct: 1006 GETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRG-FPGDRGL 1064
Query: 130 PRRLKSWSLIKNTCPP 145
P + + L N PP
Sbjct: 1065 PGPVGALGLKGNEGPP 1080
Score = 36.2 bits (82), Expect = 0.017
Identities = 38/117 (32%), Positives = 46/117 (39%), Gaps = 24/117 (20%)
Query: 7 QNHHQPPTQQQPP----LPEREET-GDEEDGSPIGPPSLLGPP-----PMANGKPGDPKS 56
Q PP QQ P LP + G + P+G P L G P P GK G P
Sbjct: 714 QGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGE 773
Query: 57 ALHRGPPGSRGPLIPPLLSLPPPPWGRGPIR-RGLGPRSSPYGRGWWGVNAEPPFPG 112
+GPPG +GP + P P +G RGL +G G E FPG
Sbjct: 774 KGGQGPPGPQGP-----IGYPGPRGVKGADGIRGL--------KGTKGEKGEDGFPG 817
Score = 35.8 bits (81), Expect = 0.022
Identities = 28/82 (34%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGK----PGDPKSALHRGPPGSRGP 68
P P E+ TG P GPP L GPP K P PK G PG GP
Sbjct: 1508 PQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKG--EAGHPGPPGP 1565
Query: 69 LIPPLLSLPPPPWGRGPIRRGL 90
PP + P P RR +
Sbjct: 1566 PGPPGEVIQPLPIQASRTRRNI 1587
Score = 35.4 bits (80), Expect = 0.029
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 7 QNHHQP-------PTQQQPPLPEREETGDEEDGSPIGP------PSLLGPPPMANGKPGD 53
+N++ P P++ P +P ++T E G P G P+++ P + G PG
Sbjct: 414 ENYYDPYYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGP 473
Query: 54 PKSALHRGPPGSRGP 68
A GPPG+ GP
Sbjct: 474 EGPAGLPGPPGTMGP 488
Score = 35.0 bits (79), Expect = 0.038
Identities = 37/98 (37%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 27 GDEEDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPL-IP--PLLSLPPPPW 81
GD P+G L G PP G PG S RGP G+ GP+ IP P PP P
Sbjct: 1060 GDRGLPGPVGALGLKGNEGPP---GPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPA 1116
Query: 82 GRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP-GHGGP 118
G GP+ P GR G+ PGP G GP
Sbjct: 1117 GEKGAPGEKGPQ-GPAGRD--GLQGPVGLPGPAGPVGP 1151
Score = 35.0 bits (79), Expect = 0.038
Identities = 41/123 (33%), Positives = 46/123 (37%), Gaps = 30/123 (24%)
Query: 12 PPTQQQPP-LPEREETGDEEDGSPIGPPSLLG--PPPMANGKPGD-----------PKSA 57
PP PP LP + GD G P L+G PP G+ GD PK
Sbjct: 1460 PPGPMGPPGLPGLK--GDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGE 1517
Query: 58 LH-RGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGH 115
GP G GP PP LP PP GP+ + G G E PG PG
Sbjct: 1518 QGITGPSGPIGPPGPP--GLPGPP----------GPKGAKGSSGPTGPKGEAGHPGPPGP 1565
Query: 116 GGP 118
GP
Sbjct: 1566 PGP 1568
Score = 34.7 bits (78), Expect = 0.050
Identities = 41/136 (30%), Positives = 45/136 (33%), Gaps = 49/136 (36%)
Query: 27 GDEEDGSPIGPPSLLGPPPMANGKPGD------------------------------PKS 56
G+ D P GP + GPP A GKPG P
Sbjct: 583 GEPGDVGPQGPRGVQGPPGPA-GKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGE 641
Query: 57 ALHRGPPGSRGPLIPP-------------LLSLPPPPWGRGPIRRGLGPRSSPYGRGWWG 103
HRG PG GP PP LP P RG LGP+ P G G
Sbjct: 642 KGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGL----LGPKGPPGPPGPPG 697
Query: 104 VNAEPPFPGP-GHGGP 118
V PGP G+ GP
Sbjct: 698 VTGMDGQPGPKGNVGP 713
Score = 33.9 bits (76), Expect = 0.085
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPPPMANGK-PGDPKSALHRGPPGSRGPLIPPLLSLP 77
P +R TG + P G GP + G P P RGP G +GP P P
Sbjct: 908 PRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPG--ERGPNGPQGPTGFPGPKGP 965
Query: 78 PPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP----GHGGPT 119
P P G+ G P RG G + PGP G GPT
Sbjct: 966 PGPPGKD------GLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPT 1005
Score = 30.0 bits (66), Expect = 1.2
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 18 PPLPERE--ETGDEEDGSPIGPPSLLGP-----PPMANGKPGDPKSALHRGPPGSRGPLI 70
PP P E G PIG P GP P G PG+ G G +GP+
Sbjct: 1082 PPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVG 1141
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP-GHGGP 118
P + P P G + +G P +G G E PGP G GP
Sbjct: 1142 LPGPAGPVGPPGEDGDKGEIG---EPGQKGSKGDKGEQGPPGPTGPQGP 1187
Score = 29.6 bits (65), Expect = 1.6
Identities = 39/133 (29%), Positives = 47/133 (35%), Gaps = 35/133 (26%)
Query: 13 PTQQQPPLPEREETGDEEDG-----------SPIG---PPSLLGPP-----------PMA 47
P Q PP P E+ E G P+G P +GPP P
Sbjct: 1107 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQ 1166
Query: 48 NGKPGDPKSALHRGPPGSRGPLIPPLLS-LPPPPWGRGPIRRGL-------GPRSSPYGR 99
G GD GP G +GP+ P S P RG ++GL GPR P
Sbjct: 1167 KGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRG--QQGLFGQKGDEGPRGFPGPP 1224
Query: 100 GWWGVNAEPPFPG 112
G G+ P PG
Sbjct: 1225 GPVGLQGLPGPPG 1237
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 46.6 bits (109), Expect = 1e-05
Identities = 39/110 (35%), Positives = 43/110 (39%), Gaps = 20/110 (18%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANG-KPGDPKSALHRGPPGSRGPLI 70
PP QQ PP P P+GPP L PPP G PG P A H P
Sbjct: 310 PPPQQGPPPPPGPFP--PRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNP----AFFP 363
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTR 120
PP S P RGP P + PYGR PP+ +G P R
Sbjct: 364 PPTNSGMPTSDSRGP------PPTDPYGR-------PPPYDRGDYGPPGR 400
Score = 43.1 bits (100), Expect = 1e-04
Identities = 37/109 (33%), Positives = 42/109 (38%), Gaps = 26/109 (23%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPP 72
P Q PP P P GPP GPPP PG GPP +RG PP
Sbjct: 231 PAGQTPPRPPL---------GPPGPPGPPGPPP-----PGQVLPPPLAGPP-NRGDRPPP 275
Query: 73 LLSLPPPPWGR---GPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGP 118
+ P P+G+ GP+ G P YG PP P P GP
Sbjct: 276 PVLFPGQPFGQPPLGPLPPGPPPPVPGYG--------PPPGPPPPQQGP 316
Score = 41.2 bits (95), Expect = 5e-04
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 36 GPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGP--- 92
GP GPPP P+ L GPPG GP PP PP GP RG P
Sbjct: 219 GPAGPGGPPPPFPAGQTPPRPPL--GPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPP 276
Query: 93 ---RSSPYGRGWWG-VNAEPPFPGPGHGGP 118
P+G+ G + PP P PG+G P
Sbjct: 277 VLFPGQPFGQPPLGPLPPGPPPPVPGYGPP 306
Score = 38.1 bits (87), Expect = 0.004
Identities = 35/95 (36%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 12 PPTQQ-QPPLPEREETGDEED------GSPIGPPSL----LGPPPMANG---KPGDPKSA 57
PP Q PPL GD G P G P L GPPP G PG P
Sbjct: 254 PPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPP- 312
Query: 58 LHRGPPGSRGPLIP-------PLLSLPPPPWGRGP 85
+GPP GP P P L+L PPP GP
Sbjct: 313 -QQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGP 346
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 46.2 bits (108), Expect = 2e-05
Identities = 40/106 (37%), Positives = 45/106 (42%), Gaps = 27/106 (25%)
Query: 19 PLP-EREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLP 77
P+P +R TG P GPP GPP G G P S RG G +GP PP L P
Sbjct: 188 PVPRQRRPTG------PAGPPGQTGPP----GPAGPPGSKGDRGQTGEKGPAGPPGLLGP 237
Query: 78 PPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP-GHGGPTRGS 122
P GPR P G G P PGP G+ GP+ S
Sbjct: 238 P------------GPRGLP---GEMGRPGPPGPPGPAGNPGPSPNS 268
Score = 39.7 bits (91), Expect = 0.002
Identities = 43/145 (29%), Positives = 52/145 (35%), Gaps = 65/145 (44%)
Query: 12 PPTQQQPPLP--------EREETGDEEDGSPIGPPSLLGPP-----PMANGKPG------ 52
PP Q PP P +R +TG++ P GPP LLGPP P G+PG
Sbjct: 201 PPGQTGPPGPAGPPGSKGDRGQTGEK---GPAGPPGLLGPPGPRGLPGEMGRPGPPGPPG 257
Query: 53 ----------DPKSALH------------------------RGPPGSRGPLIPPLLSLPP 78
P+ AL+ G PG RGP P P
Sbjct: 258 PAGNPGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVLAGVPGPRGPPGP-----PG 312
Query: 79 PPWGRGPIRRGLGPRSSPYGRGWWG 103
PP RGP GP +P +G G
Sbjct: 313 PPGPRGP----PGPPGTPGSQGLAG 333
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 27 GDEEDGSPIGPPSLLGPPPMANGKPGD---PKSALHR---GPPGSRGPLIPPLLSLPPPP 80
G++ D P GPP + G G G+ P H+ GPPG+RGP+ P PP
Sbjct: 632 GEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGL 691
Query: 81 WGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGG 117
G + +GP P G G P PG PG GG
Sbjct: 692 QGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGG 729
Score = 40.8 bits (94), Expect = 7e-04
Identities = 39/120 (32%), Positives = 46/120 (38%), Gaps = 27/120 (22%)
Query: 27 GDEEDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRG-------PLIPPLLSLP 77
G + D P GP GP PP NG PG P G PG +G P +P L
Sbjct: 1306 GKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPR 1365
Query: 78 PPPWGRG----PIRRGL----------GPRSSP---YGRGWWGVNAEPPFPG-PGHGGPT 119
PP G P + G+ G R P +G G +P PG PGH G T
Sbjct: 1366 GPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHT 1425
Score = 38.1 bits (87), Expect = 0.004
Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 40/144 (27%)
Query: 22 EREETGDEEDGSPIGP------PSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLL- 74
E+ G+E P+GP P L GPP GK G+P RG PG GPL
Sbjct: 953 EKGAAGEEGSPGPVGPRGDPGAPGLPGPP--GKGKDGEPGL---RGSPGLPGPLGTKAAC 1007
Query: 75 -----------------------SLPPPPWGRGPIRRGL----GPRSSPYGRGWWGVNAE 107
+P P RG G+ GP P +G G
Sbjct: 1008 GKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGL 1067
Query: 108 PPFPGP-GHGGPTRGSFHKEQRNP 130
P FPGP G G + +R P
Sbjct: 1068 PGFPGPQGPAGRDGAPGNPGERGP 1091
Score = 37.7 bits (86), Expect = 0.006
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 25 ETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRG-PLIPPLLSLPPPPWGR 83
+ G++ + P GPP L G + P P +GP G +G P +P L P
Sbjct: 835 DRGEKGEAGPAGPPGLPGTTSLFTPHPRMPG---EQGPKGEKGDPGLPGEPGLQGRPGEL 891
Query: 84 GPIRRGLGPRSSPYGRGWWGVNAEPPFPG----PGHGG 117
GP GP P +G G + P G PGH G
Sbjct: 892 GP----QGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVG 925
Score = 37.4 bits (85), Expect = 0.008
Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 34 PIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPR 93
P GPP + GPP G PG P G PG GP PP P P G G +
Sbjct: 715 PPGPPGVPGPPG-PGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPP------GTK 767
Query: 94 SSPYGRGWWGVNAEPPFPG 112
P RG G+ +P G
Sbjct: 768 GEPGERGEDGLPGKPGLRG 786
Score = 37.4 bits (85), Expect = 0.008
Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 35 IGPPSLLGPPPM-----ANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG 89
+GPP GPP A G PG S GPPG +GP LP P G + G
Sbjct: 1194 MGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGP-----SGLPGIPGEEG--KEG 1246
Query: 90 LGPRSSPYGRGWWGVNAEPPFPGP-GHGGP 118
+ P G G EP PGP G GP
Sbjct: 1247 RDGKPGPPGEP--GKAGEPGLPGPEGARGP 1274
Score = 36.6 bits (83), Expect = 0.013
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 23/110 (20%)
Query: 15 QQQPPLPEREETGDEEDGS--PIGPPSLLGPPPMAN--GKPGDPKSALHRGPPGSRGPLI 70
+Q P P + G+ PIGP GPP + GK GD G G +GP
Sbjct: 658 EQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPG 717
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGGPT 119
PP + PP GP SP G+ E FPG PG GPT
Sbjct: 718 PPGVPGPP------------GPGGSP------GLPGEIGFPGKPGPPGPT 749
Score = 36.2 bits (82), Expect = 0.017
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 2 PKRKKQNHHQPPTQQQPPLPEREETGDEEDGSP-------IGPPSLLGPPPMANGKPGDP 54
P R Q + P+ P ER GD G+P +GPP + G P G+PG
Sbjct: 1520 PGRPGQGGLEGPSGPIGPKGERGAKGDP--GAPGVGLRGEMGPPGIPGQP----GEPGYA 1573
Query: 55 KSALHR--GPPGSRGPLIPPLLSLPPPPWGR 83
K L GP G GP P L PP P G+
Sbjct: 1574 KDGLPGIPGPQGETGPAGHPGLPGPPGPPGQ 1604
Score = 35.8 bits (81), Expect = 0.022
Identities = 37/109 (33%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 18 PPLPEREETGDEEDGSPIGPPSLLGPPPMA--NGKPGDPKSALHRGPPGSRG-PLIPPLL 74
P P RE G E GPP L GPP +A G G+ + G G +G P +P +
Sbjct: 1137 PGKPGRE--GTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFM 1194
Query: 75 SLP--PPPWGRGPIRRGLGP---RSSPYGRGWWGVNAEPPFPG-PGHGG 117
P P P G I GP + SP G G PG PG G
Sbjct: 1195 GPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEG 1243
Score = 35.0 bits (79), Expect = 0.038
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 34 PIGPPSLLGPP-----PMANGKPGDPKSALHRGPPGSRGPL-IPPLLSLPPPPWGRGPIR 87
P GPP +G P P +G+ G+ +A G PG GP P LP PP
Sbjct: 929 PSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPP------- 981
Query: 88 RGLGPRSSPYGRGWWGVNAEPPFPGP 113
G G P G+ P PGP
Sbjct: 982 -GKGKDGEP------GLRGSPGLPGP 1000
Score = 34.7 bits (78), Expect = 0.050
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 10/117 (8%)
Query: 2 PKRKKQNHHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPP-----PMANGKPGDPKS 56
PK +K + P +P L R G+ P GPP G P A G PG P
Sbjct: 869 PKGEKGD---PGLPGEPGLQGRP--GELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGH 923
Query: 57 ALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
GP G G + P L P G + G SP G G P PGP
Sbjct: 924 VGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGP 980
Score = 34.7 bits (78), Expect = 0.050
Identities = 38/107 (35%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 30 EDGSPIGPPSLLGP--PPM------------ANGKPGDPKSALHRGPPGSRGPLIPPLLS 75
E+GSP G P LGP PP GKPG+P RG PG +G PP
Sbjct: 1352 ENGSP-GLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGK 1410
Query: 76 LPPPPWGRGPIRRG----LGPRSSPYGRGWWGVNAEPPFPG-PGHGG 117
P G P +G +GP+ P G G P PG PG G
Sbjct: 1411 GQPGDPGI-PGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRG 1456
Score = 34.7 bits (78), Expect = 0.050
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 36 GPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPR 93
G P + G PP G+PGDP H+G G GP P GP+ GP
Sbjct: 1396 GDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGP--------QGLPGENGPV----GPP 1443
Query: 94 SSPYGRGWWGVNAEPP 109
P G+ G+ E P
Sbjct: 1444 GPPGQPGFPGLRGESP 1459
Score = 33.9 bits (76), Expect = 0.085
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 25 ETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRG 84
E G++ GPP G M G+PG+ G G RGP PP L PP G
Sbjct: 528 EKGEKGSLGLPGPPGRDGSKGM-RGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAP 586
Query: 85 PIRRGLGPRSSPYGRGWWGVNAEPPFPG----PGHGGPT 119
++ G + + +G G++ P PG G GP+
Sbjct: 587 GLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPS 625
Score = 33.1 bits (74), Expect = 0.14
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 16 QQPPLPEREETGDEEDGSPIGPPSLLGP-----PPMANGKPGDPKSALHRGPPGSRGPLI 70
+Q P E+ + G + G P LGP PP A G+ G + G PG+ G +
Sbjct: 866 EQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVG 925
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
P S PP G +R G RG G E PGP
Sbjct: 926 APGPSGPPGSVGAPGLR---GTPGKDGERGEKGAAGEEGSPGP 965
Score = 32.3 bits (72), Expect = 0.25
Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 28/101 (27%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPP 72
P + PP P TG P GPP PP G+PG+ RG G
Sbjct: 740 PGKPGPPGP----TGPPGKDGPNGPPG----PPGTKGEPGE------RGEDG-------- 777
Query: 73 LLSLPPPPWGRGPI-RRGLGPRSSPYGRGWWGVNAEPPFPG 112
LP P RG I +GL R P +G G+ P FPG
Sbjct: 778 ---LPGKPGLRGEIGEQGLAGR--PGEKGEAGLPGAPGFPG 813
Score = 32.0 bits (71), Expect = 0.32
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIP 71
PP Q+PP P E+ G + + P G +A G G P GP G G + P
Sbjct: 454 PPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVA-GPMGLP------GPKGDIGAIGP 506
Query: 72 PLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP 113
+ P P +G + G+G P+G+G G PGP
Sbjct: 507 --VGAPGPKGEKGDV--GIG----PFGQGEKGEKGSLGLPGP 540
Score = 31.6 bits (70), Expect = 0.42
Identities = 38/121 (31%), Positives = 41/121 (33%), Gaps = 30/121 (24%)
Query: 27 GDEEDGSPIGPPSLLGPPPMAN--------GKPGDPKSALHRGPPGSRGPLIPPLL---- 74
G E P GP L G P G PG+P A G PG G PP
Sbjct: 1222 GKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHT 1281
Query: 75 --SLPPPPWGRG-----PIRRGL----------GPRSSPYGRGWWGVNAEPPFPG-PGHG 116
S P P G P + GL GP+ RG G N P PG PG
Sbjct: 1282 GDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPS 1341
Query: 117 G 117
G
Sbjct: 1342 G 1342
Score = 30.8 bits (68), Expect = 0.72
Identities = 40/144 (27%), Positives = 48/144 (33%), Gaps = 43/144 (29%)
Query: 11 QPPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMAN---------------------- 48
+P +P LP G+ P GPP L GPP
Sbjct: 552 EPGELGEPGLP-----GEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGL 606
Query: 49 ----GKPGDPKSALHRGPPGSRGPL-----IPPLLSLPPPPWGRGPIRRGL-GPRSSPYG 98
GKPGD GP G GP + P + PP G + GL G + +P
Sbjct: 607 DGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGP--AGPPGVPGSVVQQEGLKGEQGAPGP 664
Query: 99 RGWWGVNAEPPFPGP----GHGGP 118
RG G P GP G GP
Sbjct: 665 RGHQGAPGPPGARGPIGPEGRDGP 688
Score = 30.8 bits (68), Expect = 0.72
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 32 GSP--IGPPSL-LGPPPMANGKPGDPKSALHRGPPGSRGPLIPP-LLSLPPPPWGRGPI- 86
GSP G P + + PP +G PGD S RG PG GP P P P RGP
Sbjct: 1034 GSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPG 1093
Query: 87 RRGLGPRSSP 96
+ GL SP
Sbjct: 1094 KPGLSSLLSP 1103
Score = 30.8 bits (68), Expect = 0.72
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 47 ANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYG-RGWWGVN 105
+ G+PG P G PG GP+ P GR P + GL S P G +G G
Sbjct: 1495 SQGRPGPPGPPGKDGLPGRAGPMGEP---------GR-PGQGGLEGPSGPIGPKGERGAK 1544
Query: 106 AEPPFPGPGHGG 117
+P PG G G
Sbjct: 1545 GDPGAPGVGLRG 1556
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 45.4 bits (106), Expect = 3e-05
Identities = 40/108 (37%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 16 QQPPLPEREE-----TGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLI 70
Q PP P EE G+ P GPP L G P + G PG A GPPGSRG
Sbjct: 369 QGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPG-SRGLPGADGRAGVMGPPGSRGASG 427
Query: 71 PPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWG-VNAEPPFPGPGHGG 117
P + P GR +GPR P G G E P PG G
Sbjct: 428 PAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDG 475
Score = 38.9 bits (89), Expect = 0.003
Identities = 42/127 (33%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 12 PPTQQQPPLPER--EETGDEEDGSPIG----PPSLLGP--PPMANGKPG---------DP 54
PP PP P + DG +G P L+GP PP A G PG +P
Sbjct: 61 PPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEP 120
Query: 55 KSALHRGPPGSRGPLIPPLLSLP---PPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFP 111
GP G+RGP PP + P GR R +GP+ + RG+ G P F
Sbjct: 121 GEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGA---RGFPGTPGLPGFK 177
Query: 112 G-PGHGG 117
G GH G
Sbjct: 178 GIRGHNG 184
Score = 37.4 bits (85), Expect = 0.008
Identities = 39/114 (34%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 16 QQPPLPEREETGDEEDGSPIGPPSLLGPPPMAN-----GKPGDPKSALHR-----GPPGS 65
Q PP P+ + G E G P GPP G P + GKPG+ LH GP G
Sbjct: 531 QGPPGPQGVQGGKGEQGPP-GPPGFQGLPGPSGPAGEVGKPGE--RGLHGEFGLPGPAGP 587
Query: 66 RGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPT 119
RG PP S P G R GP +G GV GP GP+
Sbjct: 588 RGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGP--SGPS 639
Score = 37.4 bits (85), Expect = 0.008
Identities = 41/127 (32%), Positives = 49/127 (38%), Gaps = 26/127 (20%)
Query: 18 PPLPEREE--TGDEEDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPL---- 69
PP P +E G D P+G +G PP G+ G A GPPG+ GP
Sbjct: 809 PPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG 868
Query: 70 IPPLLSLPPPPWGRG----------PIRRGL----GPRSSPYGRGWWGVNAEPPFPG--- 112
P +L LP RG P G+ G R P G GVN P G
Sbjct: 869 APGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDG 928
Query: 113 -PGHGGP 118
PG+ GP
Sbjct: 929 NPGNDGP 935
Score = 35.8 bits (81), Expect = 0.022
Identities = 36/110 (32%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 12 PPTQQQPPLPEREETGDEEDGSPIGPPSLLGPPPMANGKPG--DPKS-ALHRGPPGSRGP 68
P ++ PP P + D G P GPP GPP + D K L GP G GP
Sbjct: 40 PRGERGPPGPPGRDGEDGPTGPP-GPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGP 98
Query: 69 LIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWG-VNAEPPFPGPGHGG 117
PP + P P G GP P G G A P PG G
Sbjct: 99 RGPPGAAGAPGPQG------FQGPAGEPGEPGQTGPAGARGPAGPPGKAG 142
Score = 35.8 bits (81), Expect = 0.022
Identities = 35/105 (33%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 22 EREETGDEEDGSPIGPPSLLGP--PPMANGKPGDPKSALHRGPPGSR---------GPLI 70
ER G + + +GP +G P NG PG S GPPG GP
Sbjct: 740 ERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPG 799
Query: 71 PPLLSLPPPPWGRGPIRRGLGPR--SSPYGR-GWWGVNAEPPFPG 112
P +S PP P G GPR P GR G G P F G
Sbjct: 800 PSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAG 844
Score = 34.7 bits (78), Expect = 0.050
Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPP-----PMANGKPGDPKSALHRGPPGSRGPLIPPL 73
P R G P GP GPP P G+ G +A GP G RG + P
Sbjct: 230 PAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPG 289
Query: 74 LSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG----PGHGGP 118
LS GP+ GP +P G G PG PG GP
Sbjct: 290 LS--------GPV----GPPGNPGANGLTGAKGAAGLPGVAGAPGLPGP 326
Score = 33.9 bits (76), Expect = 0.085
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 27 GDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPI 86
G D G P L+GP G PG P + GP G GP+ P + P P G
Sbjct: 433 GPNGDAGRPGEPGLMGP----RGLPGSPGNI---GPAGKEGPVGLPGIDGRPGPIGPA-- 483
Query: 87 RRGLGPRSSPYGRGWWGVNAEPPFPG----PGHGG 117
G R P G+ G PG GH G
Sbjct: 484 ----GARGEPGNIGFPGPKGPTGDPGKNGDKGHAG 514
Score = 33.9 bits (76), Expect = 0.085
Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 19 PLPEREETGDEEDGSPIGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPP 78
P R G+ + P GP GP A G+PG +GP G G + P
Sbjct: 704 PAGPRGSPGERGEVGPAGPNGFAGPAGAA-GQPGAKGERGAKGPKGENGVVGP-----TG 757
Query: 79 PPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPG-PGHGGPT 119
P GP GP P G G P G PG G T
Sbjct: 758 PVGAAGP----AGPNGPPGPAGSRGDGGPPGMTGFPGAAGRT 795
Score = 33.5 bits (75), Expect = 0.11
Identities = 28/78 (35%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 34 PIGPPSLLGPPPMAN-----GKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWG------ 82
P GP GP A G PG A RGP G +GP PP PP P G
Sbjct: 1049 PAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGY 1108
Query: 83 ----RGPIRRGLGPRSSP 96
G R PRS+P
Sbjct: 1109 DFGYDGDFYRADQPRSAP 1126
Score = 32.3 bits (72), Expect = 0.25
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 36 GPPSLLGPPPMA-----NGKPGDPKSALHRGPP------GSRGPLIPPLLSLPPPPWGRG 84
G L+G P A +G G+P SA +GPP G RGP + PP P G
Sbjct: 340 GARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPG-- 397
Query: 85 PIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTRG 121
+R G R P G GV P G RG
Sbjct: 398 -LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRG 433
Score = 32.3 bits (72), Expect = 0.25
Identities = 33/104 (31%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 35 IGPPSLLGPP--------PMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPI 86
+G P +LG P P G G+P GPPG+RGP P + P G
Sbjct: 867 LGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGP--PGAVGSPGVNGAPGEA 924
Query: 87 RRGLGP-RSSPYGR-GWWGVNAEPPFPG----------PGHGGP 118
R P P GR G G E +PG PG GP
Sbjct: 925 GRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGP 968
Score = 29.6 bits (65), Expect = 1.6
Identities = 36/121 (29%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 13 PTQQQPPLPEREETGDEEDGSP--IGPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLI 70
P PP + + E G P IGP G P +G G +RG G GP+
Sbjct: 930 PGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPG-PHGPVGPAGKHGNRGETGPSGPVG 988
Query: 71 PPLLSLPPPPWGRGPIRRG------LGPRSSPYGRGWWGVNAEPPFPG-------PGHGG 117
P P P G IR GPR P +G G+ P G PG G
Sbjct: 989 PAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVG 1048
Query: 118 P 118
P
Sbjct: 1049 P 1049
Score = 29.3 bits (64), Expect = 2.1
Identities = 30/102 (29%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 36 GPPSLLGPPPMANGKPGDPKSALHRGPPGSRGPLIPP----------------LLSLPPP 79
GP GP G PG P GP G GP PP + L P
Sbjct: 33 GPAGDRGPRG-ERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPG 91
Query: 80 PWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGGPTRG 121
P G R G +P +G+ G EP PG RG
Sbjct: 92 PMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG 133
Score = 29.3 bits (64), Expect = 2.1
Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 32 GSPIGPPSLLGPP--PMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRG 89
G P G P + G P P NG PG + RG PG RG + P P RG
Sbjct: 190 GQP-GAPGVKGEPGAPGENGTPGQTGA---RGLPGERG-----RVGAPGPAGARGS-DGS 239
Query: 90 LGPRSSPYGRGWWGVNAEPPFPGP-------GHGGP 118
+GP G G P PGP G+ GP
Sbjct: 240 VGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGP 275
Score = 29.3 bits (64), Expect = 2.1
Identities = 33/113 (29%), Positives = 38/113 (33%), Gaps = 26/113 (23%)
Query: 27 GDEEDGSP-----IGPPSLLGP--PPMANGKPGDPKSALHRGPPGSRGPLIPPLLSLPPP 79
G E G P IG P G P A G PG + RG G+ GP P
Sbjct: 653 GKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGP-------- 704
Query: 80 PWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP-GHGGPTRGSFHKEQRNPR 131
GPR SP RG G F GP G G + + P+
Sbjct: 705 ----------AGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPK 747
Score = 27.3 bits (59), Expect = 7.9
Identities = 31/103 (30%), Positives = 35/103 (33%), Gaps = 20/103 (19%)
Query: 26 TGDEEDGSPIGPPSLLGP-----PPMANGKPGDPKSALHRGPPGSRGPLIPP-LLSLPPP 79
TGD G L G P NG G P +G G +GP PP LP P
Sbjct: 501 TGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGP 560
Query: 80 PWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGP----GHGGP 118
GP G G++ E PGP G GP
Sbjct: 561 S----------GPAGEVGKPGERGLHGEFGLPGPAGPRGERGP 593
Score = 27.3 bits (59), Expect = 7.9
Identities = 34/116 (29%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 13 PTQQQPPLPEREETGDEEDGSPIGPPSLLGP------PPMAN-----GKPGDPKSALHRG 61
P P R + G+ + P G P L G P +A G PG A RG
Sbjct: 995 PRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRG 1054
Query: 62 PPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGG 117
P G GP + P G IR GP+ G G P PG GG
Sbjct: 1055 PAGPSGPAGKDGRTGHPGTVGPAGIR---GPQGHQGPAGPPGPPGPPGPPGVSGGG 1107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.142 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,053,073
Number of Sequences: 37866
Number of extensions: 1120042
Number of successful extensions: 10543
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 858
Number of HSP's that attempted gapping in prelim test: 4659
Number of HSP's gapped (non-prelim): 3619
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.