Guide to the Human Genome
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Name: LOC100289302 Sequence: fasta or formatted (182aa) NCBI GI: 239745181
Description:

PREDICTED: hypothetical protein XP_002343383

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         18           2
 C cysteine            0.5          1           1
 D aspartate           2.2          4           1
 E glutamate           5.5         10           2
 F phenylalanine       2.7          5           2
 G glycine             8.8         16           2
 H histidine           3.3          6           1
 I isoleucine          1.1          2           1
 K lysine              3.8          7           1
 L leucine             8.2         15           2
 M methionine          1.1          2           1
 N asparagine          1.6          3           1
 P proline            15.4         28           3
 Q glutamine           3.8          7           1
 R arginine            7.1         13           2
 S serine             12.1         22           2
 T threonine           6.6         12           2
 V valine              3.3          6           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343383 
LOC100291541          1.000   PREDICTED: hypothetical protein XP_002347583 
LOC100292158          0.788   PREDICTED: hypothetical protein 
EN1                   0.057   engrailed homeobox 1 
ATN1                  0.045   atrophin-1 
ATN1                  0.045   atrophin-1 
ARHGAP17              0.045   nadrin isoform 2 
AGAP2                 0.042   centaurin, gamma 1 isoform PIKE-L 
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Hom...
LOC100292124          0.042   PREDICTED: hypothetical protein XP_002346387 
LOC100291634          0.042   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.042   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.042   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.042   PREDICTED: hypothetical protein 
TAF4                  0.042   TBP-associated factor 4 
RERE                  0.042   atrophin-1 like protein isoform b 
RERE                  0.042   atrophin-1 like protein isoform a 
RERE                  0.042   atrophin-1 like protein isoform a 
ASXL2                 0.042   additional sex combs like 2 
ARHGAP17              0.042   nadrin isoform 1 
FLJ22184              0.042   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.042   PREDICTED: hypothetical protein LOC80164 
CREBBP                0.042   CREB binding protein isoform b 
CREBBP                0.042   CREB binding protein isoform a 
PRRT3                 0.042   proline-rich transmembrane protein 3 
MBD6                  0.042   methyl-CpG binding domain protein 6 
HCN2                  0.040   hyperpolarization activated cyclic nucleotide-gated...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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