Guide to the Human Genome
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Name: WASF1 Sequence: fasta or formatted (559aa) NCBI GI: 68161500
Description:

Wiskott-Aldrich syndrome protein family member 1

Referenced in:

Cytoskeleton
Rho and Rac

Other entries for this name:
alt mRNA [559aa] Wiskott-Aldrich syndrome protein family member 1
alt mRNA [559aa] Wiskott-Aldrich syndrome protein family member 1
alt mRNA [559aa] Wiskott-Aldrich syndrome protein family member 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         39           2
 C cysteine            0.9          5           1
 D aspartate           4.8         27           2
 E glutamate           7.5         42           3
 F phenylalanine       2.3         13           2
 G glycine             3.2         18           1
 H histidine           3.2         18           1
 I isoleucine          4.3         24           2
 K lysine              4.3         24           1
 L leucine             9.1         51           2
 M methionine          1.4          8           1
 N asparagine          2.3         13           1
 P proline            17.7         99           8
 Q glutamine           4.7         26           2
 R arginine            6.3         35           3
 S serine              7.9         44           2
 T threonine           5.2         29           1
 V valine              5.9         33           1
 W tryptophan          0.5          3           1
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Wiskott-Aldrich syndrome protein family member 1 [Ho... 
WASF1                 1.000   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 1.000   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 1.000   Wiskott-Aldrich syndrome protein family member 1 [Hom...
WASF2                 0.379   WAS protein family, member 2 
WASF3                 0.377   WAS protein family, member 3 
FMN2                  0.078   formin 2 
WASL                  0.076   Wiskott-Aldrich syndrome gene-like protein 
RAPH1                 0.067   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.064   PREDICTED: hypothetical protein FLJ22184 
DIAPH1                0.061   diaphanous 1 isoform 2 
DIAPH1                0.061   diaphanous 1 isoform 1 
MUC2                  0.061   mucin 2 precursor 
WIPF3                 0.060   WAS/WASL interacting protein family, member 3 [Homo...
FLJ22184              0.059   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.059   PREDICTED: hypothetical protein LOC80164 
WIPF1                 0.059   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.059   WAS/WASL interacting protein family, member 1 
CCNK                  0.058   cyclin K isoform 1 
CPSF6                 0.057   cleavage and polyadenylation specific factor 6, 68 ...
RERE                  0.055   atrophin-1 like protein isoform b 
RERE                  0.055   atrophin-1 like protein isoform a 
RERE                  0.055   atrophin-1 like protein isoform a 
MLL4                  0.055   myeloid/lymphoid or mixed-lineage leukemia 4 
SF3A2                 0.055   splicing factor 3a, subunit 2 
MLL2                  0.054   myeloid/lymphoid or mixed-lineage leukemia 2 
BRD4                  0.054   bromodomain-containing protein 4 isoform long 
CASKIN1               0.052   CASK interacting protein 1 
SFPQ                  0.051   splicing factor proline/glutamine rich (polypyrimidin...
PRR12                 0.051   proline rich 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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