Guide to the Human Genome
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Name: LOC100289537 Sequence: fasta or formatted (205aa) NCBI GI: 239744876
Description:

PREDICTED: hypothetical protein XP_002344118

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         12           2
 C cysteine            4.9         10           2
 D aspartate           2.9          6           2
 E glutamate           2.9          6           1
 F phenylalanine       2.4          5           1
 G glycine             8.8         18           1
 H histidine           2.9          6           1
 I isoleucine          2.4          5           2
 K lysine              3.4          7           2
 L leucine             8.3         17           2
 M methionine          2.4          5           1
 N asparagine          2.9          6           1
 P proline            10.2         21           2
 Q glutamine           2.4          5           1
 R arginine           12.2         25           3
 S serine             12.7         26           3
 T threonine           4.9         10           2
 V valine              4.9         10           2
 W tryptophan          1.5          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344118 
LOC100291801          1.000   PREDICTED: hypothetical protein XP_002344789 
LOC100290035          1.000   PREDICTED: hypothetical protein XP_002347459 
KRTAP10-4             0.029   keratin associated protein 10-4 
LOC100292957          0.020   PREDICTED: hypothetical protein 
LOC100290383          0.020   PREDICTED: hypothetical protein XP_002347044 
PHRF1                 0.017   PHD and ring finger domains 1 
KRTAP4-9              0.015   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-9              0.015   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.015   keratin associated protein 4-9 
LOC100131696          0.015   PREDICTED: keratin associated protein 
LOC651986             0.012   PREDICTED: similar to forkhead box L2 
ZFAT                  0.012   zinc finger protein 406 isoform ZFAT-1 
ZFAT                  0.012   zinc finger protein 406 isoform TR-ZFAT 
KRTAP4-3              0.012   keratin associated protein 4-3 
KSR2                  0.012   kinase suppressor of ras 2 
KRTAP4-5              0.012   keratin associated protein 4-5 
LOC100131696          0.012   PREDICTED: keratin associated protein 
LOC100288060          0.012   PREDICTED: hypothetical protein XP_002343557 
CCDC49                0.012   coiled-coil domain containing 49 
CER1                  0.010   cerberus 1 
STARD9                0.010   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100293294          0.010   PREDICTED: hypothetical protein 
STARD9                0.010   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100289745          0.010   PREDICTED: hypothetical protein XP_002347086 
STARD9                0.010   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100288749          0.010   PREDICTED: hypothetical protein XP_002342931 
TRIOBP                0.010   TRIO and F-actin binding protein isoform 6 
KRTAP4-4              0.010   keratin associated protein 4.4 
KRTAP4-12             0.010   keratin associated protein 4-12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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