Guide to the Human Genome
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Name: LOC100292957 Sequence: fasta or formatted (274aa) NCBI GI: 239754902
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         13           2
 C cysteine            4.7         13           1
 D aspartate           1.1          3           1
 E glutamate           3.3          9           1
 F phenylalanine       2.9          8           2
 G glycine             6.9         19           1
 H histidine           4.4         12           2
 I isoleucine          2.9          8           2
 K lysine              4.4         12           1
 L leucine            10.9         30           2
 M methionine          1.8          5           1
 N asparagine          2.6          7           2
 P proline            10.2         28           2
 Q glutamine           6.6         18           1
 R arginine            4.4         12           1
 S serine             13.1         36           3
 T threonine           9.1         25           2
 V valine              4.0         11           1
 W tryptophan          1.1          3           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290383          0.962   PREDICTED: hypothetical protein XP_002347044 
LOC100289268          0.303   PREDICTED: hypothetical protein XP_002342358 
LOC100293485          0.269   PREDICTED: hypothetical protein 
LOC727978             0.161   PREDICTED: hypothetical protein 
LOC727978             0.159   PREDICTED: hypothetical protein, partial 
LOC100133588          0.095   PREDICTED: similar to hCG1818014 
VPS13D                0.027   vacuolar protein sorting 13D isoform 2 
VPS13D                0.027   vacuolar protein sorting 13D isoform 1 
R3HDM1                0.024   R3H domain containing 1 
EP400                 0.016   E1A binding protein p400 
LOC100291801          0.015   PREDICTED: hypothetical protein XP_002344789 
LOC100290035          0.015   PREDICTED: hypothetical protein XP_002347459 
LOC100289537          0.015   PREDICTED: hypothetical protein XP_002344118 
ISM2                  0.015   isthmin 2 homolog isoform 3 
ISM2                  0.015   isthmin 2 homolog isoform 1 
SOS1                  0.013   son of sevenless homolog 1 
DLL4                  0.013   delta-like 4 protein precursor 
IFI16                 0.013   interferon, gamma-inducible protein 16 
KIAA1267              0.013   hypothetical protein LOC284058 
PHACTR4               0.013   phosphatase and actin regulator 4 isoform 2 
DISP2                 0.013   dispatched B 
PHACTR4               0.013   phosphatase and actin regulator 4 isoform 1 
KIAA2018              0.013   hypothetical protein LOC205717 
FOXI1                 0.013   forkhead box I1 isoform a 
SRRM2                 0.013   splicing coactivator subunit SRm300 
MUC7                  0.013   mucin 7, secreted precursor 
MUC7                  0.013   mucin 7, secreted precursor 
MUC7                  0.013   mucin 7, secreted precursor 
SEMA6A                0.013   sema domain, transmembrane domain (TM), and cytoplas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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