Guide to the Human Genome
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Name: ZFAT Sequence: fasta or formatted (1243aa) NCBI GI: 46487911
Description:

zinc finger protein 406 isoform ZFAT-1

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [846aa] zinc finger protein 406 isoform TR-ZFAT
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         88           2
 C cysteine            4.2         52           2
 D aspartate           4.2         52           2
 E glutamate           9.1        113           3
 F phenylalanine       2.6         32           1
 G glycine             5.2         65           3
 H histidine           4.9         61           2
 I isoleucine          3.9         48           3
 K lysine              8.4        105           3
 L leucine             8.2        102           3
 M methionine          1.8         22           1
 N asparagine          3.1         38           1
 P proline             5.2         65           2
 Q glutamine           5.2         65           2
 R arginine            4.3         54           2
 S serine              7.8         97           3
 T threonine           5.6         70           2
 V valine              6.2         77           2
 W tryptophan          0.4          5           1
 Y tyrosine            2.6         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 406 isoform ZFAT-1 
ZFAT                  0.653   zinc finger protein 406 isoform TR-ZFAT 
ZNF836                0.048   zinc finger protein 836 
LOC100287429          0.047   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.047   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.047   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.047   zinc finger protein 84 
ZNF84                 0.047   zinc finger protein 84 
ZNF808                0.047   zinc finger protein 808 
ZNF28                 0.047   zinc finger protein 28 
LOC388559             0.046   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.046   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.046   PREDICTED: hypothetical protein LOC388559 
ZNF816A               0.046   zinc finger protein 816A 
ZBTB17                0.046   zinc finger and BTB domain containing 17 
ZNF93                 0.046   zinc finger protein 93 
ZNF81                 0.046   zinc finger protein 81 
ZNF782                0.046   zinc finger protein 782 
ZNF182                0.045   zinc finger protein 21 isoform 2 
ZNF182                0.045   zinc finger protein 21 isoform 1 
ZFP64                 0.045   zinc finger protein 64 isoform d 
ZNF845                0.045   zinc finger protein 845 
ZNF320                0.044   zinc finger protein 320 
ZNF567                0.044   zinc finger protein 567 
ZNF468                0.044   zinc finger protein ZNF468 isoform 1 
ZNF468                0.044   zinc finger protein ZNF468 isoform 2 
ZNF425                0.044   zinc finger protein 425 
ZNF234                0.044   zinc finger protein 234 
ZNF234                0.044   zinc finger protein 234 
ZNF761                0.044   zinc finger protein 761 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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