Guide to the Human Genome
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Name: ZFAT Sequence: fasta or formatted (846aa) NCBI GI: 71480169
Description:

zinc finger protein 406 isoform TR-ZFAT

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [1243aa] zinc finger protein 406 isoform ZFAT-1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         57           2
 C cysteine            4.5         38           2
 D aspartate           4.3         36           2
 E glutamate           8.5         72           3
 F phenylalanine       2.5         21           1
 G glycine             5.2         44           3
 H histidine           4.6         39           1
 I isoleucine          3.9         33           3
 K lysine              8.9         75           3
 L leucine             9.1         77           3
 M methionine          1.4         12           1
 N asparagine          3.0         25           1
 P proline             6.3         53           2
 Q glutamine           5.0         42           2
 R arginine            4.7         40           2
 S serine              8.5         72           3
 T threonine           4.7         40           2
 V valine              5.6         47           2
 W tryptophan          0.4          3           1
 Y tyrosine            2.4         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 406 isoform TR-ZFAT 
ZFAT                  0.961   zinc finger protein 406 isoform ZFAT-1 
ZNF235                0.056   zinc finger protein 93 homolog 
ZNF778                0.055   zinc finger protein 778 
ZFP28                 0.054   zinc finger protein 28 
ZFP37                 0.054   zinc finger protein 37 homolog 
ZNF569                0.053   zinc finger protein 569 
ZNF43                 0.052   zinc finger protein 43 
ZFP112                0.052   zinc finger protein 228 isoform 1 
ZFP112                0.052   zinc finger protein 228 isoform 2 
ZNF197                0.052   zinc finger protein 197 isoform 1 
ZNF71                 0.051   zinc finger protein 71 
ZNF700                0.051   zinc finger protein 700 
ZNF765                0.051   zinc finger protein 765 
ZBTB24                0.051   zinc finger and BTB domain containing 24 
ZNF643                0.051   zinc finger protein 643 
ZNF45                 0.051   zinc finger protein 45 
ZNF91                 0.050   zinc finger protein 91 
ZNF429                0.050   zinc finger protein 429 
LOC100287429          0.050   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.050   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.050   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF782                0.050   zinc finger protein 782 
ZNF146                0.050   zinc finger protein 146 
ZNF146                0.050   zinc finger protein 146 
ZNF146                0.050   zinc finger protein 146 
ZNF84                 0.050   zinc finger protein 84 
ZNF84                 0.050   zinc finger protein 84 
ZNF699                0.050   zinc finger protein 699 
ZNF557                0.050   zinc finger protein 557 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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