Guide to the Human Genome
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Name: LOC100289745 Sequence: fasta or formatted (443aa) NCBI GI: 239749560
Description:

PREDICTED: hypothetical protein XP_002347086

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         56           2
 C cysteine            2.5         11           2
 D aspartate           2.7         12           2
 E glutamate           6.5         29           2
 F phenylalanine       1.1          5           1
 G glycine            14.7         65           3
 H histidine           4.5         20           2
 I isoleucine          0.9          4           1
 K lysine              0.9          4           1
 L leucine             8.6         38           2
 M methionine          0.2          1           1
 N asparagine          0.2          1           1
 P proline            11.5         51           3
 Q glutamine           5.6         25           1
 R arginine           10.6         47           2
 S serine              6.1         27           2
 T threonine           4.1         18           1
 V valine              4.3         19           2
 W tryptophan          1.6          7           1
 Y tyrosine            0.7          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347086 
LOC100288749          0.998   PREDICTED: hypothetical protein XP_002342931 
LOC100293294          0.951   PREDICTED: hypothetical protein 
CECR6                 0.019   cat eye syndrome chromosome region, candidate 6 isof...
SORCS2                0.019   VPS10 domain receptor protein SORCS 2 
KIAA1211              0.018   hypothetical protein LOC57482 
EVX2                  0.018   even-skipped homeobox 2 
ALPK3                 0.017   alpha-kinase 3 
TTBK1                 0.017   tau tubulin kinase 1 
FAM181B               0.017   hypothetical protein LOC220382 
TBX2                  0.015   T-box 2 
EN1                   0.015   engrailed homeobox 1 
LOC100130360          0.015   PREDICTED: hypothetical protein 
CACNG8                0.015   voltage-dependent calcium channel gamma-8 subunit [H...
DGKI                  0.015   diacylglycerol kinase, iota 
DDX51                 0.015   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
LOC100292745          0.014   PREDICTED: hypothetical protein 
LOC100290074          0.014   PREDICTED: hypothetical protein XP_002346855 
LOC727804             0.014   PREDICTED: hypothetical protein 
ZIC2                  0.014   zinc finger protein of the cerebellum 2 
SHC2                  0.014   SHC (Src homology 2 domain containing) transforming...
PCLO                  0.014   piccolo isoform 2 
PCLO                  0.014   piccolo isoform 1 
MARCH11               0.014   membrane-associated ring finger (C3HC4) 11 
MORC2                 0.014   MORC family CW-type zinc finger 2 
LOC100291634          0.013   PREDICTED: hypothetical protein XP_002346062 
LOC728767             0.013   PREDICTED: hypothetical protein 
LOC100291096          0.013   PREDICTED: hypothetical protein XP_002346952 
LOC728767             0.013   PREDICTED: hypothetical protein 
LOC100287232          0.013   PREDICTED: hypothetical protein XP_002342816 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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