Guide to the Human Genome
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Name: LOC100290383 Sequence: fasta or formatted (269aa) NCBI GI: 239749442
Description:

PREDICTED: hypothetical protein XP_002347044

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         13           2
 C cysteine            4.8         13           1
 D aspartate           1.1          3           1
 E glutamate           3.7         10           1
 F phenylalanine       3.3          9           2
 G glycine             7.1         19           1
 H histidine           4.5         12           2
 I isoleucine          2.6          7           2
 K lysine              4.5         12           1
 L leucine            11.2         30           2
 M methionine          1.9          5           1
 N asparagine          1.9          5           2
 P proline            10.0         27           2
 Q glutamine           6.7         18           1
 R arginine            4.5         12           1
 S serine             12.3         33           3
 T threonine           9.3         25           2
 V valine              4.1         11           1
 W tryptophan          1.1          3           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347044 
LOC100292957          0.978   PREDICTED: hypothetical protein 
LOC100289268          0.286   PREDICTED: hypothetical protein XP_002342358 
LOC100293485          0.251   PREDICTED: hypothetical protein 
LOC727978             0.160   PREDICTED: hypothetical protein, partial 
LOC727978             0.143   PREDICTED: hypothetical protein 
LOC100133588          0.097   PREDICTED: similar to hCG1818014 
R3HDM1                0.024   R3H domain containing 1 
DISP2                 0.019   dispatched B 
LOC100291801          0.015   PREDICTED: hypothetical protein XP_002344789 
LOC100290035          0.015   PREDICTED: hypothetical protein XP_002347459 
LOC100289537          0.015   PREDICTED: hypothetical protein XP_002344118 
ISM2                  0.015   isthmin 2 homolog isoform 1 
VPS13D                0.015   vacuolar protein sorting 13D isoform 2 
VPS13D                0.015   vacuolar protein sorting 13D isoform 1 
CEP152                0.015   centrosomal protein 152kDa 
DLL4                  0.013   delta-like 4 protein precursor 
KIAA2018              0.011   hypothetical protein LOC205717 
LOC100292298          0.011   PREDICTED: hypothetical protein 
LOC100288422          0.011   PREDICTED: hypothetical protein 
LOC100288422          0.011   PREDICTED: hypothetical protein XP_002342827 
LOC100288422          0.011   PREDICTED: hypothetical protein 
ISM2                  0.011   isthmin 2 homolog isoform 3 
KIAA1109              0.011   fragile site-associated protein 
KIAA1267              0.009   hypothetical protein LOC284058 
LRRC61                0.009   leucine rich repeat containing 61 
LRRC61                0.009   leucine rich repeat containing 61 
SKIV2L                0.009   superkiller viralicidic activity 2-like homolog [Hom...
ACO2                  0.007   aconitase 2, mitochondrial precursor 
POLS                  0.007   DNA polymerase sigma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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