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Search of human proteins with 239744552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 444 e-125
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 241 4e-64
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 234 4e-62
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 233 1e-61
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 181 3e-46
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] 178 3e-45
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 132 2e-31
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 52 5e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 50 2e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 50 2e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 50 2e-06
gi|188536004 zinc finger protein 469 [Homo sapiens] 50 2e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 49 3e-06
gi|154146199 sal-like 3 [Homo sapiens] 47 1e-05
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 47 1e-05
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 47 1e-05
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 47 2e-05
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 47 2e-05
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 47 2e-05
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 47 2e-05
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 46 2e-05
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 46 3e-05
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 46 3e-05
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 46 3e-05
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 444 bits (1143), Expect = e-125
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR 60
MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR
Sbjct: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR 60
Query: 61 RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSAS 120
RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSAS
Sbjct: 61 RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSAS 120
Query: 121 VGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGE 180
VGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGE
Sbjct: 121 VGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGE 180
Query: 181 DAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRGDAGNEG 221
DAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRGDAGNEG
Sbjct: 181 DAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRGDAGNEG 221
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 241 bits (615), Expect = 4e-64
Identities = 140/221 (63%), Positives = 151/221 (68%), Gaps = 22/221 (9%)
Query: 1 MSTLSGRPFSSSSLSRET----IGVQPGWGGEEVQGLARAG----LATGK-GQRPPGPGR 51
MSTLSGRPFS R + +G + +AG L G+ QR PGPG
Sbjct: 1 MSTLSGRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGV 60
Query: 52 VRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPL 111
+ +R + ERPAE APMPSSAPRGPTEPALRRPSSA+RPL
Sbjct: 61 SAVGASGQQRAPESNERPAEEPT----------PAPMPSSAPRGPTEPALRRPSSADRPL 110
Query: 112 AQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSA 171
A PSSS GRAPGAMASPS SS+ATGKPRGRDGRPRREEDDV PEEKRLRLLLE GSA
Sbjct: 111 APGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 170
Query: 172 QPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCR 212
QP +DGEDAPRPGR ETGTQTGGDGRGVSDAGAGVRGCR
Sbjct: 171 QP---DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 208
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 234 bits (597), Expect = 4e-62
Identities = 124/171 (72%), Positives = 131/171 (76%), Gaps = 13/171 (7%)
Query: 42 KGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPAL 101
+ QR PGPG + +R + ERPAE APMPSSAPRGPTEPAL
Sbjct: 154 RAQRRPGPGVSAVGASGQQRAPESNERPAEEPT----------PAPMPSSAPRGPTEPAL 203
Query: 102 RRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKR 161
RRPSSA+RPLA PSSS GRAPGAMASPS SS+ATGKPRGRDGRPRREEDDV PEEKR
Sbjct: 204 RRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKR 263
Query: 162 LRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCR 212
LRLLLE GSAQP +DGEDAPRPGR ETGTQTGGDGRGVSDAGAGVRGCR
Sbjct: 264 LRLLLEEGSAQP---DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 311
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 233 bits (594), Expect = 1e-61
Identities = 122/171 (71%), Positives = 131/171 (76%), Gaps = 10/171 (5%)
Query: 45 RPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRP 104
R PGPG + +R ++ERPAE + A MPSSAPRGPTEPA RRP
Sbjct: 86 RRPGPGVSAVSAGGQQRAPESQERPAEESA----------PALMPSSAPRGPTEPAFRRP 135
Query: 105 SSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRL 164
SSA+RPLA PSSS GRAP AMASPS SSEATGKPRGRDG PRREEDDVPPEEKRLRL
Sbjct: 136 SSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRL 195
Query: 165 LLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRG 215
LLE GSAQP+D EDGEDAPRPGR +TGTQTGGDGRGVSD GAGVRGC+ RG
Sbjct: 196 LLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRG 246
>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 181 bits (460), Expect = 3e-46
Identities = 114/207 (55%), Positives = 120/207 (57%), Gaps = 27/207 (13%)
Query: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR 60
MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR
Sbjct: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR 60
Query: 61 RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSAS 120
RGGGARERPAEGARGPRAARGGARA P A R + R AQ P
Sbjct: 61 RGGGARERPAEGARGPRAARGGARAGP-----------DAQLRAARTHRARAQTPQLRRE 109
Query: 121 VGRAPGAMASPSRSS-EATGKP---------RGRDGRPRREEDDVPPEEKRLRLLLEGGS 170
A R S + G+P R G P +E P + L GG
Sbjct: 110 AACAGSFFFRKCRQSPRSHGQPFPQLRSHWQAPRQGWPAQEGGGRRPSRREEAAALAGGG 169
Query: 171 AQPQDGEDGEDAPRPGRVETGTQTGGD 197
+ G G R GR G GGD
Sbjct: 170 KRTAPGRRG----RGGRAAAG--QGGD 190
>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 178 bits (452), Expect = 3e-45
Identities = 113/207 (54%), Positives = 119/207 (57%), Gaps = 27/207 (13%)
Query: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR 60
MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLA GKGQRPPGPGRVRAAQARAR
Sbjct: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLAAGKGQRPPGPGRVRAAQARAR 60
Query: 61 RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSAS 120
RGGGARERPAEGARGPRAARGGARA P A R + R AQ P
Sbjct: 61 RGGGARERPAEGARGPRAARGGARAGP-----------DAQLRAARTHRARAQTPQLRRE 109
Query: 121 VGRAPGAMASPSRSS-EATGKP---------RGRDGRPRREEDDVPPEEKRLRLLLEGGS 170
A R S + G+P R G P +E P + L GG
Sbjct: 110 AACAGSFFFRKCRQSPRSHGQPFPQLRSHWQAPRQGWPAQEGGGRRPSRREEAAALAGGG 169
Query: 171 AQPQDGEDGEDAPRPGRVETGTQTGGD 197
+ G G R GR G GGD
Sbjct: 170 KRTAPGLRG----RGGRAAAG--QGGD 190
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 132 bits (332), Expect = 2e-31
Identities = 96/200 (48%), Positives = 103/200 (51%), Gaps = 33/200 (16%)
Query: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR 60
MSTLSGRPFSS L Q + G L R G A G GQ PG G+ A
Sbjct: 1 MSTLSGRPFSSLLLR------QGDYRG--ATWLGRGGGA-GPGQSGPGHGQGTATSWART 51
Query: 61 RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSAS 120
GA PA A+RG RA P +PR P A R + +R AQ P
Sbjct: 52 GESGAGPSPAWRRCAGEASRGRQRARSGPPKSPRRPD--AQLRAARTQRARAQTPQLRRE 109
Query: 121 VGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGE 180
RA DG PRREEDDVPPEEKRLRLLLEGGSAQP EDGE
Sbjct: 110 DARAG-------------------DGWPRREEDDVPPEEKRLRLLLEGGSAQP---EDGE 147
Query: 181 DAPRPGRVETGTQTGGDGRG 200
DAPRPGR ETGTQTGGDG+G
Sbjct: 148 DAPRPGREETGTQTGGDGKG 167
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 51.6 bits (122), Expect = 5e-07
Identities = 44/147 (29%), Positives = 55/147 (37%), Gaps = 16/147 (10%)
Query: 51 RVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERP 110
RV R RRG A GPRA G + P P S PR P R P
Sbjct: 30 RVAELSERKRRGSSLCSYYGRSAAGPRA--GAQQPLPQPQSRPRQEQSPPPARQDLQGPP 87
Query: 111 LAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGS 170
L +A S +P P + +P G G P + PEE+ +GG+
Sbjct: 88 LPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEE------DGGA 141
Query: 171 A-QPQDGEDGEDAPRPGRVETGTQTGG 196
A Q +DG RPG G+ GG
Sbjct: 142 AGQRRDG-------RPGSSHNGSGDGG 161
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 50.1 bits (118), Expect = 2e-06
Identities = 60/194 (30%), Positives = 67/194 (34%), Gaps = 26/194 (13%)
Query: 46 PPGPGRVRAAQARARRGGGARERPAEGARGPRAARG--------GARAAPMPSSAPRGPT 97
PPGPG V Q G ER G GP +G GA+ P P G
Sbjct: 974 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI-SGKD 1032
Query: 98 EPALRRPSSAERPLAQAPSSSASVG-----RAPGAMASP-SRSSEATGKPRGRDGRPRRE 151
PA R ER L A + G PG + SP R S T P G GRP +
Sbjct: 1033 GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1092
Query: 152 EDDVPPEEKRLRLLLEGGSAQPQD--GEDGEDAP--RPGRVETGTQTGGDGRGVSDAGAG 207
P EK G PQ G DG P PG G DG G
Sbjct: 1093 GPPGPAGEKG-----APGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1147
Query: 208 VRGCRVRGDAGNEG 221
+G +GD G G
Sbjct: 1148 QKGS--KGDKGENG 1159
Score = 34.7 bits (78), Expect = 0.066
Identities = 52/186 (27%), Positives = 64/186 (34%), Gaps = 42/186 (22%)
Query: 47 PGPGRVRAAQARARRGGGARERPAEGARGPRAARG-GARAAPMPSSAPRGPT-EPALRRP 104
PG + A+ A + G +R G RG R ARG + P +S GP P R P
Sbjct: 873 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 932
Query: 105 SSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRP----RREEDDV----- 155
+ P+ PG P P G+DG P +R E
Sbjct: 933 QGPQGPVG-----------FPGPKGPPG--------PPGKDGLPGHPGQRGETGFQGKTG 973
Query: 156 PPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRG 215
PP GG PQ G GE P R G G G AG G +G
Sbjct: 974 PPG--------PGGVVGPQ-GPTGETGPIGERGHPG-PPGPPGEQGLPGAAGKEG--AKG 1021
Query: 216 DAGNEG 221
D G +G
Sbjct: 1022 DPGPQG 1027
Score = 33.9 bits (76), Expect = 0.11
Identities = 51/190 (26%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 22 QPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARG 81
+PG G++ G + PPGP + G AEG +G + A+G
Sbjct: 1334 EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG 1393
Query: 82 GARA-APMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGK 140
A A P + P GP PA + R + P + A G P
Sbjct: 1394 EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI-PGPVGEQGLPGAAGQDGPPG-------- 1444
Query: 141 PRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRG 200
P G G P + D EK L+ G P GE GE R G T G G G
Sbjct: 1445 PMGPPGLPGLKGDPGSKGEKGHPGLI--GLIGP-PGEQGEKGDR-GLPGTQGSPGAKGDG 1500
Query: 201 VSDAGAGVRG 210
AG G
Sbjct: 1501 GIPGPAGPLG 1510
Score = 33.5 bits (75), Expect = 0.15
Identities = 52/189 (27%), Positives = 66/189 (34%), Gaps = 18/189 (9%)
Query: 37 GLATGKGQR-PPGPGRVRAAQARARRGGGARERPAEGARGPRAARG--GARAAPMPSSAP 93
G G G++ PG A GG ER +G GP A G GA+ P P
Sbjct: 1258 GSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP-GDDGP 1316
Query: 94 RGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREED 153
+G P + P P P+ VG G P + P G G P
Sbjct: 1317 KGNPGP-VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSGEAGPPGPPGK 1373
Query: 154 DVPPEEKRLRLLLEGGSAQP-QDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCR 212
PP EG + GE G + P PG+ TG G G G+RG
Sbjct: 1374 RGPPGAAG----AEGRQGEKGAKGEAGAEGP-PGK--TG-PVGPQGPAGKPGPEGLRG-- 1423
Query: 213 VRGDAGNEG 221
+ G G +G
Sbjct: 1424 IPGPVGEQG 1432
Score = 30.8 bits (68), Expect = 0.96
Identities = 55/220 (25%), Positives = 74/220 (33%), Gaps = 44/220 (20%)
Query: 44 QRPPGPGRVRAAQARARRGGGARERPAE-GARGPRAARG--------GARAAPMPSSAPR 94
Q PPGP + R GG R P E GA+G R G G R P P
Sbjct: 579 QGPPGPTGKPGKRGRPGADGG-RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPG 637
Query: 95 GPTEPALRRPSSAERPLA----QAPSSSASVGRAPGAMASPSRSS-------EATGKPRG 143
P + +R P P PGA P + + P+G
Sbjct: 638 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG 697
Query: 144 RDGRPRREEDDVP-----------------PEEKRLRLLLEGGSAQP-QDGEDGEDAPRP 185
G P ++ + P P+ K L G P G++G+ +
Sbjct: 698 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKG 757
Query: 186 GRVETGTQ--TGGDG-RGVSDAGAGVRGCR-VRGDAGNEG 221
G Q G G RGV A GVRG + +G+ G +G
Sbjct: 758 ALGPPGPQGPIGYPGPRGVKGAD-GVRGLKGSKGEKGEDG 796
Score = 30.0 bits (66), Expect = 1.6
Identities = 57/230 (24%), Positives = 71/230 (30%), Gaps = 34/230 (14%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRP---PGPGRVRAAQARARRGGGARERPAEG------- 72
PG G+E Q + L Q P PGP V+ A G E+ +G
Sbjct: 744 PGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGD 803
Query: 73 -----------------ARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAP 115
GP +G A P + + + L P P Q P
Sbjct: 804 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGP 863
Query: 116 SSSASVGRAPGAMASP-SRSSEATGKPRGRDG--RPRREEDDVPPEEKRLRLLLEGGSAQ 172
S PGA +R PRG+ G PR P K GG
Sbjct: 864 KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 923
Query: 173 P-QDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRGDAGNEG 221
P GE G P+ G V G G D G G RG+ G +G
Sbjct: 924 PGPPGERGPQGPQ-GPVGFPGPKGPPGPPGKDGLPGHPG--QRGETGFQG 970
Score = 29.3 bits (64), Expect = 2.8
Identities = 54/205 (26%), Positives = 67/205 (32%), Gaps = 38/205 (18%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGG 82
P +E Q A A + PPGP + G + + G GP+ RG
Sbjct: 519 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRG- 577
Query: 83 ARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPR 142
P GPT +P RP A GR G P + R
Sbjct: 578 -------VQGPPGPT----GKPGKRGRP-------GADGGR--GMPGEPGAKGD-----R 612
Query: 143 GRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQD----GEDGEDAPR--PGRVETGTQTGG 196
G DG P D E+ +G P D GEDGE PR PG G
Sbjct: 613 GFDGLPGLPGDKGHRGERG----PQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP 668
Query: 197 DGRGVSDAGAGVRGCRVRGDAGNEG 221
G + G+ G V G G +G
Sbjct: 669 RGTPGAPGQPGMAG--VDGPPGPKG 691
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 50.1 bits (118), Expect = 2e-06
Identities = 60/194 (30%), Positives = 67/194 (34%), Gaps = 26/194 (13%)
Query: 46 PPGPGRVRAAQARARRGGGARERPAEGARGPRAARG--------GARAAPMPSSAPRGPT 97
PPGPG V Q G ER G GP +G GA+ P P G
Sbjct: 923 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI-SGKD 981
Query: 98 EPALRRPSSAERPLAQAPSSSASVG-----RAPGAMASP-SRSSEATGKPRGRDGRPRRE 151
PA R ER L A + G PG + SP R S T P G GRP +
Sbjct: 982 GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1041
Query: 152 EDDVPPEEKRLRLLLEGGSAQPQD--GEDGEDAP--RPGRVETGTQTGGDGRGVSDAGAG 207
P EK G PQ G DG P PG G DG G
Sbjct: 1042 GPPGPAGEKG-----APGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1096
Query: 208 VRGCRVRGDAGNEG 221
+G +GD G G
Sbjct: 1097 QKGS--KGDKGENG 1108
Score = 34.7 bits (78), Expect = 0.066
Identities = 52/186 (27%), Positives = 64/186 (34%), Gaps = 42/186 (22%)
Query: 47 PGPGRVRAAQARARRGGGARERPAEGARGPRAARG-GARAAPMPSSAPRGPT-EPALRRP 104
PG + A+ A + G +R G RG R ARG + P +S GP P R P
Sbjct: 822 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 881
Query: 105 SSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRP----RREEDDV----- 155
+ P+ PG P P G+DG P +R E
Sbjct: 882 QGPQGPVG-----------FPGPKGPPG--------PPGKDGLPGHPGQRGETGFQGKTG 922
Query: 156 PPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRG 215
PP GG PQ G GE P R G G G AG G +G
Sbjct: 923 PPG--------PGGVVGPQ-GPTGETGPIGERGHPG-PPGPPGEQGLPGAAGKEG--AKG 970
Query: 216 DAGNEG 221
D G +G
Sbjct: 971 DPGPQG 976
Score = 33.9 bits (76), Expect = 0.11
Identities = 51/190 (26%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 22 QPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARG 81
+PG G++ G + PPGP + G AEG +G + A+G
Sbjct: 1283 EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG 1342
Query: 82 GARA-APMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGK 140
A A P + P GP PA + R + P + A G P
Sbjct: 1343 EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI-PGPVGEQGLPGAAGQDGPPG-------- 1393
Query: 141 PRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRG 200
P G G P + D EK L+ G P GE GE R G T G G G
Sbjct: 1394 PMGPPGLPGLKGDPGSKGEKGHPGLI--GLIGP-PGEQGEKGDR-GLPGTQGSPGAKGDG 1449
Query: 201 VSDAGAGVRG 210
AG G
Sbjct: 1450 GIPGPAGPLG 1459
Score = 33.5 bits (75), Expect = 0.15
Identities = 52/189 (27%), Positives = 66/189 (34%), Gaps = 18/189 (9%)
Query: 37 GLATGKGQR-PPGPGRVRAAQARARRGGGARERPAEGARGPRAARG--GARAAPMPSSAP 93
G G G++ PG A GG ER +G GP A G GA+ P P
Sbjct: 1207 GSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP-GDDGP 1265
Query: 94 RGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREED 153
+G P + P P P+ VG G P + P G G P
Sbjct: 1266 KGNPGP-VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSGEAGPPGPPGK 1322
Query: 154 DVPPEEKRLRLLLEGGSAQP-QDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCR 212
PP EG + GE G + P PG+ TG G G G+RG
Sbjct: 1323 RGPPGAAG----AEGRQGEKGAKGEAGAEGP-PGK--TG-PVGPQGPAGKPGPEGLRG-- 1372
Query: 213 VRGDAGNEG 221
+ G G +G
Sbjct: 1373 IPGPVGEQG 1381
Score = 30.8 bits (68), Expect = 0.96
Identities = 55/220 (25%), Positives = 74/220 (33%), Gaps = 44/220 (20%)
Query: 44 QRPPGPGRVRAAQARARRGGGARERPAE-GARGPRAARG--------GARAAPMPSSAPR 94
Q PPGP + R GG R P E GA+G R G G R P P
Sbjct: 528 QGPPGPTGKPGKRGRPGADGG-RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPG 586
Query: 95 GPTEPALRRPSSAERPLA----QAPSSSASVGRAPGAMASPSRSS-------EATGKPRG 143
P + +R P P PGA P + + P+G
Sbjct: 587 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG 646
Query: 144 RDGRPRREEDDVP-----------------PEEKRLRLLLEGGSAQP-QDGEDGEDAPRP 185
G P ++ + P P+ K L G P G++G+ +
Sbjct: 647 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKG 706
Query: 186 GRVETGTQ--TGGDG-RGVSDAGAGVRGCR-VRGDAGNEG 221
G Q G G RGV A GVRG + +G+ G +G
Sbjct: 707 ALGPPGPQGPIGYPGPRGVKGAD-GVRGLKGSKGEKGEDG 745
Score = 30.0 bits (66), Expect = 1.6
Identities = 57/230 (24%), Positives = 71/230 (30%), Gaps = 34/230 (14%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRP---PGPGRVRAAQARARRGGGARERPAEG------- 72
PG G+E Q + L Q P PGP V+ A G E+ +G
Sbjct: 693 PGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGD 752
Query: 73 -----------------ARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAP 115
GP +G A P + + + L P P Q P
Sbjct: 753 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGP 812
Query: 116 SSSASVGRAPGAMASP-SRSSEATGKPRGRDG--RPRREEDDVPPEEKRLRLLLEGGSAQ 172
S PGA +R PRG+ G PR P K GG
Sbjct: 813 KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 872
Query: 173 P-QDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRGDAGNEG 221
P GE G P+ G V G G D G G RG+ G +G
Sbjct: 873 PGPPGERGPQGPQ-GPVGFPGPKGPPGPPGKDGLPGHPG--QRGETGFQG 919
Score = 29.3 bits (64), Expect = 2.8
Identities = 54/205 (26%), Positives = 67/205 (32%), Gaps = 38/205 (18%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGG 82
P +E Q A A + PPGP + G + + G GP+ RG
Sbjct: 468 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRG- 526
Query: 83 ARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPR 142
P GPT +P RP A GR G P + R
Sbjct: 527 -------VQGPPGPT----GKPGKRGRP-------GADGGR--GMPGEPGAKGD-----R 561
Query: 143 GRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQD----GEDGEDAPR--PGRVETGTQTGG 196
G DG P D E+ +G P D GEDGE PR PG G
Sbjct: 562 GFDGLPGLPGDKGHRGERG----PQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP 617
Query: 197 DGRGVSDAGAGVRGCRVRGDAGNEG 221
G + G+ G V G G +G
Sbjct: 618 RGTPGAPGQPGMAG--VDGPPGPKG 640
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 50.1 bits (118), Expect = 2e-06
Identities = 60/194 (30%), Positives = 67/194 (34%), Gaps = 26/194 (13%)
Query: 46 PPGPGRVRAAQARARRGGGARERPAEGARGPRAARG--------GARAAPMPSSAPRGPT 97
PPGPG V Q G ER G GP +G GA+ P P G
Sbjct: 962 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI-SGKD 1020
Query: 98 EPALRRPSSAERPLAQAPSSSASVG-----RAPGAMASP-SRSSEATGKPRGRDGRPRRE 151
PA R ER L A + G PG + SP R S T P G GRP +
Sbjct: 1021 GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1080
Query: 152 EDDVPPEEKRLRLLLEGGSAQPQD--GEDGEDAP--RPGRVETGTQTGGDGRGVSDAGAG 207
P EK G PQ G DG P PG G DG G
Sbjct: 1081 GPPGPAGEKG-----APGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1135
Query: 208 VRGCRVRGDAGNEG 221
+G +GD G G
Sbjct: 1136 QKGS--KGDKGENG 1147
Score = 34.7 bits (78), Expect = 0.066
Identities = 52/186 (27%), Positives = 64/186 (34%), Gaps = 42/186 (22%)
Query: 47 PGPGRVRAAQARARRGGGARERPAEGARGPRAARG-GARAAPMPSSAPRGPT-EPALRRP 104
PG + A+ A + G +R G RG R ARG + P +S GP P R P
Sbjct: 861 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 920
Query: 105 SSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRP----RREEDDV----- 155
+ P+ PG P P G+DG P +R E
Sbjct: 921 QGPQGPVG-----------FPGPKGPPG--------PPGKDGLPGHPGQRGETGFQGKTG 961
Query: 156 PPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRG 215
PP GG PQ G GE P R G G G AG G +G
Sbjct: 962 PPG--------PGGVVGPQ-GPTGETGPIGERGHPG-PPGPPGEQGLPGAAGKEG--AKG 1009
Query: 216 DAGNEG 221
D G +G
Sbjct: 1010 DPGPQG 1015
Score = 33.9 bits (76), Expect = 0.11
Identities = 51/190 (26%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 22 QPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARG 81
+PG G++ G + PPGP + G AEG +G + A+G
Sbjct: 1322 EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG 1381
Query: 82 GARA-APMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGK 140
A A P + P GP PA + R + P + A G P
Sbjct: 1382 EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI-PGPVGEQGLPGAAGQDGPPG-------- 1432
Query: 141 PRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRG 200
P G G P + D EK L+ G P GE GE R G T G G G
Sbjct: 1433 PMGPPGLPGLKGDPGSKGEKGHPGLI--GLIGP-PGEQGEKGDR-GLPGTQGSPGAKGDG 1488
Query: 201 VSDAGAGVRG 210
AG G
Sbjct: 1489 GIPGPAGPLG 1498
Score = 33.5 bits (75), Expect = 0.15
Identities = 52/189 (27%), Positives = 66/189 (34%), Gaps = 18/189 (9%)
Query: 37 GLATGKGQR-PPGPGRVRAAQARARRGGGARERPAEGARGPRAARG--GARAAPMPSSAP 93
G G G++ PG A GG ER +G GP A G GA+ P P
Sbjct: 1246 GSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP-GDDGP 1304
Query: 94 RGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREED 153
+G P + P P P+ VG G P + P G G P
Sbjct: 1305 KGNPGP-VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSGEAGPPGPPGK 1361
Query: 154 DVPPEEKRLRLLLEGGSAQP-QDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCR 212
PP EG + GE G + P PG+ TG G G G+RG
Sbjct: 1362 RGPPGAAG----AEGRQGEKGAKGEAGAEGP-PGK--TG-PVGPQGPAGKPGPEGLRG-- 1411
Query: 213 VRGDAGNEG 221
+ G G +G
Sbjct: 1412 IPGPVGEQG 1420
Score = 30.8 bits (68), Expect = 0.96
Identities = 55/220 (25%), Positives = 74/220 (33%), Gaps = 44/220 (20%)
Query: 44 QRPPGPGRVRAAQARARRGGGARERPAE-GARGPRAARG--------GARAAPMPSSAPR 94
Q PPGP + R GG R P E GA+G R G G R P P
Sbjct: 567 QGPPGPTGKPGKRGRPGADGG-RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPG 625
Query: 95 GPTEPALRRPSSAERPLA----QAPSSSASVGRAPGAMASPSRSS-------EATGKPRG 143
P + +R P P PGA P + + P+G
Sbjct: 626 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG 685
Query: 144 RDGRPRREEDDVP-----------------PEEKRLRLLLEGGSAQP-QDGEDGEDAPRP 185
G P ++ + P P+ K L G P G++G+ +
Sbjct: 686 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKG 745
Query: 186 GRVETGTQ--TGGDG-RGVSDAGAGVRGCR-VRGDAGNEG 221
G Q G G RGV A GVRG + +G+ G +G
Sbjct: 746 ALGPPGPQGPIGYPGPRGVKGAD-GVRGLKGSKGEKGEDG 784
Score = 30.0 bits (66), Expect = 1.6
Identities = 57/230 (24%), Positives = 71/230 (30%), Gaps = 34/230 (14%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRP---PGPGRVRAAQARARRGGGARERPAEG------- 72
PG G+E Q + L Q P PGP V+ A G E+ +G
Sbjct: 732 PGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGD 791
Query: 73 -----------------ARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAP 115
GP +G A P + + + L P P Q P
Sbjct: 792 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGP 851
Query: 116 SSSASVGRAPGAMASP-SRSSEATGKPRGRDG--RPRREEDDVPPEEKRLRLLLEGGSAQ 172
S PGA +R PRG+ G PR P K GG
Sbjct: 852 KGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 911
Query: 173 P-QDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRGDAGNEG 221
P GE G P+ G V G G D G G RG+ G +G
Sbjct: 912 PGPPGERGPQGPQ-GPVGFPGPKGPPGPPGKDGLPGHPG--QRGETGFQG 958
Score = 29.3 bits (64), Expect = 2.8
Identities = 54/205 (26%), Positives = 67/205 (32%), Gaps = 38/205 (18%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGG 82
P +E Q A A + PPGP + G + + G GP+ RG
Sbjct: 507 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRG- 565
Query: 83 ARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPR 142
P GPT +P RP A GR G P + R
Sbjct: 566 -------VQGPPGPT----GKPGKRGRP-------GADGGR--GMPGEPGAKGD-----R 600
Query: 143 GRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQD----GEDGEDAPR--PGRVETGTQTGG 196
G DG P D E+ +G P D GEDGE PR PG G
Sbjct: 601 GFDGLPGLPGDKGHRGERG----PQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP 656
Query: 197 DGRGVSDAGAGVRGCRVRGDAGNEG 221
G + G+ G V G G +G
Sbjct: 657 RGTPGAPGQPGMAG--VDGPPGPKG 679
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 49.7 bits (117), Expect = 2e-06
Identities = 70/244 (28%), Positives = 84/244 (34%), Gaps = 45/244 (18%)
Query: 6 GRPFSSSSLSRETIGVQPGWGGEEVQG----LARAGLATGKGQRPPGPGRV-RAAQARAR 60
GRP + S T P G ++ +G L R L +G G G RA+ R R
Sbjct: 922 GRPKTRSLGLAPTEADAPSQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGGGGRASGLRPR 981
Query: 61 RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAER-PLAQAPSSSA 119
R G ERP R PR G+RA P P PR P R S R P + P
Sbjct: 982 RNDGLGERPPPRPRRPRTQAPGSRADPAP-RVPRAAALPEETRSSRRRRLPPRKDPRKRK 1040
Query: 120 SVGRAPGA-----------------MASPSRSSEATGKP----RGRDGR----------- 147
+ G A G AS S E RGR GR
Sbjct: 1041 ARGGAWGKELILKIVQQKNRLREYDFASESEEDEQPPPRGPGFRGRRGRGEKRKEVELTQ 1100
Query: 148 -PRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGA 206
PR +E P + R +G A P+ E G P PGR Q G R + A
Sbjct: 1101 GPREDEPQKPRKAARQEAGGDGAPANPE--EPGGSRPGPGR---SPQARGPSRSLETGAA 1155
Query: 207 GVRG 210
G
Sbjct: 1156 AREG 1159
Score = 44.7 bits (104), Expect = 6e-05
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 17/143 (11%)
Query: 46 PPGPGRVRAAQARARRGGGARERPAEGARGPRA-----ARGGARAAPMPSSAPRGPTEPA 100
P GPG R RRG G + + E +GPR R AR AP P EP
Sbjct: 1078 PRGPG------FRGRRGRGEKRKEVELTQGPREDEPQKPRKAARQEAGGDGAPANPEEPG 1131
Query: 101 LRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEK 160
RP P A+ PS S G A P + + P+ P E EE
Sbjct: 1132 GSRPGPGRSPQARGPSRSLETG-AAAREGGPKCADRPSVAPKDPLQVPTNTETS---EET 1187
Query: 161 RLRLLLEGGSAQPQDGEDGEDAP 183
R L + +P+ E E AP
Sbjct: 1188 RPSLDFPQEAKEPETAE--ESAP 1208
Score = 42.7 bits (99), Expect = 2e-04
Identities = 47/174 (27%), Positives = 62/174 (35%), Gaps = 53/174 (30%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEG---------- 72
PG+ G +G R + +G R P + R A + G GA P E
Sbjct: 1081 PGFRGRRGRGEKRKEVELTQGPREDEPQKPRKAARQEAGGDGAPANPEEPGGSRPGPGRS 1140
Query: 73 --ARGPR--------AARGGARAAPMPSSAPRGP------------TEPALRRPSSAERP 110
ARGP A GG + A PS AP+ P T P+L P A+ P
Sbjct: 1141 PQARGPSRSLETGAAAREGGPKCADRPSVAPKDPLQVPTNTETSEETRPSLDFPQEAKEP 1200
Query: 111 ----------------LAQAPSSSAS-VGRAPGAMAS----PSRSSEATGKPRG 143
L P++ A +G +PG + PSR T KP G
Sbjct: 1201 ETAEESAPDSTEFTEALRSPPAACAGEMGASPGLLIPEQPPPSRHDTGTPKPSG 1254
Score = 38.5 bits (88), Expect = 0.005
Identities = 50/171 (29%), Positives = 67/171 (39%), Gaps = 44/171 (25%)
Query: 32 GLARAGLATGKGQRP-PGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPS 90
G R G TG G +P P G++++ A +P+ +R P R ARA
Sbjct: 3708 GSPRPGTKTGGGSQPQPASGQLQSETATTPA------KPSFPSRSPAPERLPARA--QAK 3759
Query: 91 SAPRGPTEPALRRP-----------SSAERPLAQAPS-----SSASVGRAPGA------- 127
S +GP E + P SS +R Q P S S GRAP A
Sbjct: 3760 SCTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRT 3819
Query: 128 ---MASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQD 175
A+PSR KP ++ +PR PP E+R E G Q +D
Sbjct: 3820 PRKQATPSRVLPTKPKPNSQN-KPR-----PPPSEQR---KAEPGHTQRKD 3861
Score = 35.0 bits (79), Expect = 0.051
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 74 RGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPG--AMASP 131
+G R A G A+A +P + PR + L+ PS + + P S PG + +P
Sbjct: 46 KGAREAGGQAQAMELPEAQPRQARDGELKPPSLRGQAPSSTPGKRGSPQTPPGRSPLQAP 105
Query: 132 SR-SSEATGKPRGR------DGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAP- 183
SR + A G P R R + D+ PE +L PQ G AP
Sbjct: 106 SRLAGRAEGSPPQRYILGIASSRTKPTLDET-PENPQLEAAQLPEVDTPQG--PGTGAPL 162
Query: 184 RPGRVETGTQTGGDGRG 200
RPG T Q + G
Sbjct: 163 RPGLPRTEAQPAAEELG 179
Score = 35.0 bits (79), Expect = 0.051
Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 33/151 (21%)
Query: 42 KGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAP-RGPTEPA 100
KGQ P GP A R G G A R GA A P P++ P + P EP
Sbjct: 2436 KGQAPHGPVTCEVCAASFRSGPGLSRHKARKHR----PHPGAPAEPSPAALPAQQPLEPL 2491
Query: 101 LR----------RPSSAERP---------LAQAPSSSAS--VGRAPGA-------MASPS 132
+ R S ERP + Q P + S V RAPG+ SP+
Sbjct: 2492 AQKCQPPRKKSHRVSGKERPNHSRGDPSHVTQPPPAQGSKEVLRAPGSPHSQQLHPPSPT 2551
Query: 133 RSSEATGKPRGRDGRPRREEDDVPPEEKRLR 163
P + + ED++ P++ R
Sbjct: 2552 EHEVDVKTPASKPRPDQAREDELHPKQAEKR 2582
Score = 33.5 bits (75), Expect = 0.15
Identities = 50/205 (24%), Positives = 72/205 (35%), Gaps = 53/205 (25%)
Query: 64 GARERPAEGARGP-------RAARGGARAAP--------------------MPSSAPRG- 95
GAR + AEG R P RA R AP + PRG
Sbjct: 3577 GARGQDAEGKRAPLVFSGKRRAPGARGRCAPDHFQEDHLLQKEKEVSSSHMVSEGGPRGT 3636
Query: 96 -----PTEPALRRPSSAERPLAQAPSSS--------ASVGR-APGAMASPSRSSEATGKP 141
T+PA + SS +R A PS + +VG APG +A + + P
Sbjct: 3637 FHKGSATKPAGCQSSSKDRSAASTPSKALKFPVHPRKAVGSLAPGELARGTENGMKPATP 3696
Query: 142 RGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGE---DGEDAPRPGRVETGTQTGGDG 198
+ + G + P K GG +QPQ E A P + +++
Sbjct: 3697 KAKPGPSSQGSGSPRPGTK------TGGGSQPQPASGQLQSETATTPAKPSFPSRSPAPE 3750
Query: 199 R--GVSDAGAGVRGCRVRGDAGNEG 221
R + A + +G R G+ G G
Sbjct: 3751 RLPARAQAKSCTKGPREAGEQGPHG 3775
Score = 32.0 bits (71), Expect = 0.43
Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 25 WG----GEEVQGLARAG-LATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAA 79
WG E+ QG A L G P G + A + A P EGA
Sbjct: 1955 WGLLGQAEKTQGQGTANQLQPENGVSPGGTDNHASVNASPKT---ALTGPTEGAVLLEKC 2011
Query: 80 RGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASP 131
+G A + A P+ P+ R S A L A S S S GR P +SP
Sbjct: 2012 KGSRAAMSLQEEAEPTPSPPSPNRESLA-LALTAAHSRSGSEGRTPERASSP 2062
Score = 31.2 bits (69), Expect = 0.73
Identities = 45/193 (23%), Positives = 69/193 (35%), Gaps = 42/193 (21%)
Query: 50 GRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPAL--RRPSSA 107
G+ R +R + PA+G++ A G + + P PTE + + P+S
Sbjct: 2507 GKERPNHSRGDPSHVTQPPPAQGSKEVLRAPGSPHSQQLH---PPSPTEHEVDVKTPASK 2563
Query: 108 ERP---------LAQAPSSSASVGRAPGAMASPSRSSEATGKPRGR-DGRPRREEDDVPP 157
RP QA R + SPS S + K RG+ GR REE +P
Sbjct: 2564 PRPDQAREDELHPKQAEKREGRRWRREPTVDSPSHSEGKSNKKRGKLRGRRLREESILPV 2623
Query: 158 EEKRLRLLLEGGSAQPQDG-------------------EDGEDAPR-----PGRVETGTQ 193
++ +G ++P DGE PR PG +E +
Sbjct: 2624 SAD---VISDGRGSRPSPAMASYAASPSHCLSVEGGPEADGEQPPRLATLGPGVMEGAAE 2680
Query: 194 TGGDGRGVSDAGA 206
T + + GA
Sbjct: 2681 TDQEALCAGETGA 2693
Score = 29.3 bits (64), Expect = 2.8
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 90 SSAPRGPTEPALRRPSSAERPLAQAPSSSASVGR--APGAMASPSRSSEATGKPRGRDGR 147
S P P P R + + P PS+ +GR AP + AS +S
Sbjct: 2346 SKEPEDPGTPETGRSGATKMPRVTCPSTGLGLGRTTAPSSTASDFQSDSPQSHRNASHQT 2405
Query: 148 PRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGE 180
P + D + P++ + R G +P E+G+
Sbjct: 2406 P--QGDPLGPQDLKQR--SRGYKKKPASTENGQ 2434
Score = 28.5 bits (62), Expect = 4.7
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 91 SAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRR 150
S PRGP+ + + P ++AP + P R A G+P+ R
Sbjct: 874 SGPRGPSSGHPLKSKAGVTPESKAPPPLPAATPDPQTPRPGDRGCPARGRPKTRSLGLAP 933
Query: 151 EEDDVPPE------EKRLRLL---LEGGSAQPQDGEDG 179
E D P + K+L+L L+ G A G G
Sbjct: 934 TEADAPSQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGG 971
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 49.3 bits (116), Expect = 3e-06
Identities = 63/204 (30%), Positives = 79/204 (38%), Gaps = 43/204 (21%)
Query: 37 GLATGKGQR----PPGP-GRVRAAQARARRGGGARERPAEGARGPRAARG---------- 81
G + KG R PPGP GR+ AR G +R EG RGP+ G
Sbjct: 1688 GSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGI 1747
Query: 82 -GARAAPMPSSAP--RGPT-EPALRRPSSAE-------RPLAQAPSS-SASVGRA--PGA 127
G R P P P RGP E R P + +P A PS + + G+A PG
Sbjct: 1748 EGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGR 1807
Query: 128 MASPS-RSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPG 186
P R + P G G P + +D P L G + +P G+ GED G
Sbjct: 1808 DGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPG-------LNGKNGEP--GDPGED----G 1854
Query: 187 RVETGTQTGGDGRGVSDAGAGVRG 210
R +G GR D G RG
Sbjct: 1855 RKGEKGDSGASGREGRDGPKGERG 1878
Score = 44.3 bits (103), Expect = 8e-05
Identities = 66/231 (28%), Positives = 87/231 (37%), Gaps = 27/231 (11%)
Query: 6 GRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATG----KGQRP-PGPGRVRAAQARAR 60
G P + + + +G+ PG GE+ AG G KG R PGP + RA
Sbjct: 2290 GEPGPTGAPGQAVVGL-PGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAG 2348
Query: 61 RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSAS 120
G E +GA GP+ +G S P GP P ++ + L P +
Sbjct: 2349 EPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGP--PGVK----GDLGLPGLPGAPGV 2402
Query: 121 VG-----RAPGAMASPSRSSE-ATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQ 174
VG G M P S E P GR+G P PP + G S
Sbjct: 2403 VGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGS----VGPPGASGLKG 2458
Query: 175 DGED---GEDAPRPGRVETGTQTGGDGRGVSDAGAGVRG-CRVRGDAGNEG 221
D D G PR R E G + G DGR + G+ G RG+ G +G
Sbjct: 2459 DKGDPGVGLPGPRGERGEPGIR-GEDGRPGQEGPRGLTGPPGSRGERGEKG 2508
Score = 42.7 bits (99), Expect = 2e-04
Identities = 57/225 (25%), Positives = 85/225 (37%), Gaps = 19/225 (8%)
Query: 4 LSGRPFSSSSLSR--ETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARA-R 60
L G P S ++ R ET G++ E V+ + G P P R R + +
Sbjct: 1932 LRGEPGSVPNVDRLLETAGIKASALREIVETWDESS-----GSFLPVPERRRGPKGDSGE 1986
Query: 61 RGGGARERPA--EGARGPRAARG--GARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPS 116
+G +E P G RG + RG G + P + RGP P+ + + P
Sbjct: 1987 QGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPG 2046
Query: 117 SSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDG 176
+ VG A R + +GRDG P PP ++ ++ +P G
Sbjct: 2047 RAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVD----EPGPG 2102
Query: 177 EDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRGDAGNEG 221
GE P PG + G +G GV G ++GD G G
Sbjct: 2103 LSGEQGP-PGLKGAKGEPGSNGDQGPKGDRGVPG--IKGDRGEPG 2144
Score = 41.6 bits (96), Expect = 5e-04
Identities = 68/242 (28%), Positives = 78/242 (32%), Gaps = 59/242 (24%)
Query: 37 GLATGKGQR-PPGPGRVRAAQARARRGGGAR------------ERPAEGARGPRAARGGA 83
G A KG+R PPGP R A R G E+ G G A G A
Sbjct: 1489 GEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPA 1548
Query: 84 RAAPMPSSAPRGPTEP-------ALRRPSSAERPLAQAPSSSAS-------VGRA----- 124
A P GP P R P P P GRA
Sbjct: 1549 VAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGD 1608
Query: 125 ---PGAMASPSRSSE-ATGKPRGRDGRPRREEDDVPP---------EEKRLR-------- 163
PG P R PRGRDG + D+ PP E+ LR
Sbjct: 1609 SGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGP 1668
Query: 164 LLLEGGSAQP----QDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRGDAGN 219
+ +G P ++G G P+ R E G G GR V D G G R GD G
Sbjct: 1669 VGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPG-PPGPPGRLV-DTGPGAREKGEPGDRGQ 1726
Query: 220 EG 221
EG
Sbjct: 1727 EG 1728
Score = 35.4 bits (80), Expect = 0.039
Identities = 61/213 (28%), Positives = 75/213 (35%), Gaps = 39/213 (18%)
Query: 39 ATG-KGQR-PPG------PGRVRAAQARARRGGGARERPAEGARGPRAARGG-ARAAPMP 89
ATG +G+R PPG PG R G R P G GP +G R P
Sbjct: 1567 ATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPP-GDSGPPGEKGDPGRPGPPG 1625
Query: 90 SSAPRG-------------PTEPALRRPSSA-ERPLAQAPSSSASVGRAPGAMASPSRSS 135
PRG P +P L P A ER L AP VG G P
Sbjct: 1626 PVGPRGRDGEVGEKGDEGPPGDPGL--PGKAGERGLRGAPGVRGPVGEK-GDQGDPGEDG 1682
Query: 136 EATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTG 195
G P + R E P RL G + + G+ G++ PR + + G
Sbjct: 1683 R-NGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGA 1741
Query: 196 GDGRGVSDAGAGVRG-------CRVRGDAGNEG 221
RG+ G RG VRG AG +G
Sbjct: 1742 PGERGIE----GFRGPPGPQGDPGVRGPAGEKG 1770
Score = 31.2 bits (69), Expect = 0.73
Identities = 39/149 (26%), Positives = 54/149 (36%), Gaps = 10/149 (6%)
Query: 37 GLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGP 96
GL KG+R P RV A G ER +G GP RG A + RG
Sbjct: 2737 GLQGQKGERGPPGERVVGAPGVP---GAPGERGEQGRPGPAGPRGEKGEAALTEDDIRGF 2793
Query: 97 TEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVP 156
+ + + + AS R + A+ + S+ P R EE+ VP
Sbjct: 2794 VRQEMSQHCACQGQFI------ASGSRPLPSYAADTAGSQLHAVPVLRVSH-AEEEERVP 2846
Query: 157 PEEKRLRLLLEGGSAQPQDGEDGEDAPRP 185
PE+ E + QD E D+ P
Sbjct: 2847 PEDDEYSEYSEYSVEEYQDPEAPWDSDDP 2875
Score = 28.9 bits (63), Expect = 3.6
Identities = 55/211 (26%), Positives = 68/211 (32%), Gaps = 32/211 (15%)
Query: 22 QPGWGGEEVQGLARAGLATGKGQR----PPGPGRVRAAQARARRGGGARERPAEGARGPR 77
+PG G+ + G GL KG PPGP R G G RGP
Sbjct: 1348 EPGAPGQVIGGEG-PGLPGRKGDPGPSGPPGP--------RGPLGD-------PGPRGPP 1391
Query: 78 AARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRA--PGAMASPSRSS 135
G A RGP P + E L P S G PG S
Sbjct: 1392 GLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSE 1451
Query: 136 EATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQP----QDGEDGEDAPRPGRVETG 191
+ G+ G P + PP + +G P + GE GE P PG +
Sbjct: 1452 DGAPGLPGQPGSPGEQGPRGPPG----AIGPKGDRGFPGPLGEAGEKGERGP-PGPAGSR 1506
Query: 192 TQTGGDGRGVSDAGAGVRGCRVR-GDAGNEG 221
G GR + G G R G+ G G
Sbjct: 1507 GLPGVAGRPGAKGPEGPPGPTGRQGEKGEPG 1537
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 47.4 bits (111), Expect = 1e-05
Identities = 46/144 (31%), Positives = 59/144 (40%), Gaps = 13/144 (9%)
Query: 4 LSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGK------GQRPPGPGRVRAAQA 57
L RP SLS PG ++ GLA L+ G G P P AQ
Sbjct: 232 LMQRPPPRPSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQP 291
Query: 58 RARRGGGARER--PAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAP 115
+R GA PAE + + A AAP P+ AP+ A +P SA P A AP
Sbjct: 292 LSRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQ---SAASSQPQSASTPPALAP 348
Query: 116 SSSASVGRAPGAMASPSRSSEATG 139
S +G APG + + A+G
Sbjct: 349 GS--LLGAAPGLPSPLLPQTSASG 370
Score = 33.5 bits (75), Expect = 0.15
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 44 QRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGP-----TE 98
QRPP + A A + G + P A P +A GA AA + S P P +
Sbjct: 234 QRPPPRPSLSPAAAPSAPGPAPSQLPGLAAL-PLSA--GAPAAAIAGSGPAAPAAFEGAQ 290
Query: 99 PALRRPSSAERPLAQA-PSSSASVGRAPGAMA---SPSRSSEATGKPRGRDGRP 148
P R S A P A PS+ A+ AP A +P+ S A+ +P+ P
Sbjct: 291 PLSRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPP 344
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 47.0 bits (110), Expect = 1e-05
Identities = 55/182 (30%), Positives = 63/182 (34%), Gaps = 30/182 (16%)
Query: 26 GGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGG--A 83
G +Q A G G P + AR RGGG R A RGG A
Sbjct: 11 GNHRLQAYAEPGKGDSGGAGP------LSGSARRGRGGGGAIRVRRPCWSGGAGRGGGPA 64
Query: 84 RAAPMP--------------SSAPRGPTEPAL--RRPSSAERPLAQA---PSSSASVGRA 124
A +P SS GP+EP RRP A RPL QA P +A
Sbjct: 65 WAVRLPTVTAGWTWPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAARRSLE 124
Query: 125 PGAMASPSRSSEATGKPRGRDGRPRREE---DDVPPEEKRLRLLLEGGSAQPQDGEDGED 181
P + R + A G R G EE D + LR L E SA DG
Sbjct: 125 PDPAQTGPRPARAAGMSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAPASGPSDGSP 184
Query: 182 AP 183
P
Sbjct: 185 QP 186
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 47.0 bits (110), Expect = 1e-05
Identities = 52/162 (32%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 13 SLSR--ETIGVQPGWGGEE--VQGLARAGLATGKGQRPPGP------GRVRAAQARARRG 62
SLSR E +G + GGEE V+G R G A G P GP G RAA+ +RG
Sbjct: 236 SLSRGGEVVGARRRRGGEERRVRG-RRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG 294
Query: 63 GGARERPAEGARG--------PRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQA 114
GG P EGA+G PRA P P++ G A R A P A
Sbjct: 295 GGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGG----APYRAIFAAGPRLSA 350
Query: 115 PSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVP 156
PS+ A PG + + + E R + R+ P
Sbjct: 351 PSAEAE--EVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSP 390
Score = 32.7 bits (73), Expect = 0.25
Identities = 57/211 (27%), Positives = 71/211 (33%), Gaps = 22/211 (10%)
Query: 22 QPGWGGEEVQGLARAGLATGKGQRP---PGPGRVRAAQARARRGGGARERPAEGARGPRA 78
+P E +G A A ATG G PG R+ R A ARG
Sbjct: 52 RPPTRAREWEGAAWAAGATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAPRARGSCG 111
Query: 79 ARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRA-PGAMASPSRSSEA 137
G R PSSA +RP++A R AP S+ R P ++ S R S
Sbjct: 112 REPGPRRRRAPSSAG--------KRPAAAAR---AAPPRQRSLARCLPRSVGSCVRPSVG 160
Query: 138 TGKPRGRDGR------PRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGED-APRPGRVET 190
PR R RR PP + RL A P G +P P R
Sbjct: 161 PSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRR 220
Query: 191 GTQTGGDGRGVSDAGAGVRGCRVRGDAGNEG 221
+ G G+ + RG V G G
Sbjct: 221 RAERSPAGHGLPLPRSLSRGGEVVGARRRRG 251
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 47.0 bits (110), Expect = 1e-05
Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRPPGP-GRVRAAQARARRGGGARERPAEGARGPRAARG 81
PG + +G + G +G G GP R R Q R R R++ + ARG RA
Sbjct: 755 PGESRDRARGAGQPGPGSGSGAERAGPERRARDTQTRTR-----RDKLTDSARGGRARLT 809
Query: 82 GARAAPMPSSAPR--GPTEPALRRPSS-AERPLAQAPSSSASVGRAPGAMASPSRSSEAT 138
R S R ++ A+RR +S A + ++ P + S GR A+ SP+ + A
Sbjct: 810 AGRRVRRESGRRRAGATSQGAIRRAASRARKGESRRPLPANSAGRP--ALPSPAAARSAR 867
Query: 139 GKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDG 198
G R RP R PP +R APRP R G G G
Sbjct: 868 GSWGLRASRPSRAAPRGPPNFQRC------------------PAPRPRR-RLGVSIVGPG 908
Query: 199 RGVS 202
R S
Sbjct: 909 RAHS 912
Score = 41.6 bits (96), Expect = 5e-04
Identities = 46/130 (35%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 35 RAGLATGK------GQRPPGP---GRVRAAQARARRGGGARERPAEGARGP--------R 77
RA L G+ G+R G G +R A +RAR+G R PA A P R
Sbjct: 805 RARLTAGRRVRRESGRRRAGATSQGAIRRAASRARKGESRRPLPANSAGRPALPSPAAAR 864
Query: 78 AARG--GARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSS 135
+ARG G RA+ +APRGP P +R A RP + S GRA A RSS
Sbjct: 865 SARGSWGLRASRPSRAAPRGP--PNFQR-CPAPRPRRRLGVSIVGPGRAHSA----GRSS 917
Query: 136 EATGKPRGRD 145
+ P +D
Sbjct: 918 YSPKVPPVKD 927
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 47.0 bits (110), Expect = 1e-05
Identities = 52/162 (32%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 13 SLSR--ETIGVQPGWGGEE--VQGLARAGLATGKGQRPPGP------GRVRAAQARARRG 62
SLSR E +G + GGEE V+G R G A G P GP G RAA+ +RG
Sbjct: 330 SLSRGGEVVGARRRRGGEERRVRG-RRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG 388
Query: 63 GGARERPAEGARG--------PRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQA 114
GG P EGA+G PRA P P++ G A R A P A
Sbjct: 389 GGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGG----APYRAIFAAGPRLSA 444
Query: 115 PSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVP 156
PS+ A PG + + + E R + R+ P
Sbjct: 445 PSAEAE--EVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSP 484
Score = 35.0 bits (79), Expect = 0.051
Identities = 63/211 (29%), Positives = 76/211 (36%), Gaps = 44/211 (20%)
Query: 31 QGLARAGLATGKGQRPPGPG---RVRAAQARARRGGGARERPAEGARGPRAAR-----GG 82
+G + L + K R P P R AA RGG R A+ P AR
Sbjct: 209 EGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAV 268
Query: 83 ARAAPMPSSAPRGPTEPAL--RRPSSAERPLA--QAPSSS-------ASVGRAPGAMASP 131
+ AA + S P P +P L P PLA +APS S R+P P
Sbjct: 269 SLAASLARSPP--PLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLP 326
Query: 132 -----SRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAP-RP 185
SR E G R R G EE+R+R +G + G AP R
Sbjct: 327 LPRSLSRGGEVVGARRRRGG-----------EERRVRGRRQGCALGSPPIPAGPAAPGRA 375
Query: 186 GRVETGTQ--TGGDGRGVSD----AGAGVRG 210
G Q G G GVS G GVRG
Sbjct: 376 GERRAARQWRKRGGGPGVSPREGAQGEGVRG 406
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 47.0 bits (110), Expect = 1e-05
Identities = 52/162 (32%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 13 SLSR--ETIGVQPGWGGEE--VQGLARAGLATGKGQRPPGP------GRVRAAQARARRG 62
SLSR E +G + GGEE V+G R G A G P GP G RAA+ +RG
Sbjct: 330 SLSRGGEVVGARRRRGGEERRVRG-RRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG 388
Query: 63 GGARERPAEGARG--------PRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQA 114
GG P EGA+G PRA P P++ G A R A P A
Sbjct: 389 GGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGG----APYRAIFAAGPRLSA 444
Query: 115 PSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVP 156
PS+ A PG + + + E R + R+ P
Sbjct: 445 PSAEAE--EVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSP 484
Score = 35.0 bits (79), Expect = 0.051
Identities = 63/211 (29%), Positives = 76/211 (36%), Gaps = 44/211 (20%)
Query: 31 QGLARAGLATGKGQRPPGPG---RVRAAQARARRGGGARERPAEGARGPRAAR-----GG 82
+G + L + K R P P R AA RGG R A+ P AR
Sbjct: 209 EGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAV 268
Query: 83 ARAAPMPSSAPRGPTEPAL--RRPSSAERPLA--QAPSSS-------ASVGRAPGAMASP 131
+ AA + S P P +P L P PLA +APS S R+P P
Sbjct: 269 SLAASLARSPP--PLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLP 326
Query: 132 -----SRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAP-RP 185
SR E G R R G EE+R+R +G + G AP R
Sbjct: 327 LPRSLSRGGEVVGARRRRGG-----------EERRVRGRRQGCALGSPPIPAGPAAPGRA 375
Query: 186 GRVETGTQ--TGGDGRGVSD----AGAGVRG 210
G Q G G GVS G GVRG
Sbjct: 376 GERRAARQWRKRGGGPGVSPREGAQGEGVRG 406
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 46.6 bits (109), Expect = 2e-05
Identities = 54/193 (27%), Positives = 67/193 (34%), Gaps = 28/193 (14%)
Query: 28 EEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARER-----PAEGARGPRAARGG 82
+++Q + G TG PP A R GGG E+ P A G G
Sbjct: 73 QQLQQQQQQGNKTGSRTGPP---------ASIRGGGGGAEKATPLAPKGAAPGAVQPVAG 123
Query: 83 ARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPR 142
A AAP + A G RRP E P + S + +G P E G
Sbjct: 124 AEAAPAATLAALGG-----RRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGG 178
Query: 143 GRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDA-PRPGRVETGTQTG----GD 197
G R PP R + G AQ + G GE A P P G G
Sbjct: 179 GSGEREGGAPQPPPPRGWRGK----GVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNS 234
Query: 198 GRGVSDAGAGVRG 210
G GV+ G+G G
Sbjct: 235 GSGVAGGGSGGGG 247
Score = 38.5 bits (88), Expect = 0.005
Identities = 40/131 (30%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 21 VQPGWGGEEVQGLARAGLA---TGKGQRPPG-----PGRVRAAQARARRGGGARERPAEG 72
VQP G E A L G + PP P ++ GGG E G
Sbjct: 118 VQPVAGAEAAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGE--GGG 175
Query: 73 ARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPS 132
A G R G P P RG A +R S + +PSSS S G+ PG + S
Sbjct: 176 AGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSS-SAGKTPGTGSRNS 234
Query: 133 RSSEATGKPRG 143
S A G G
Sbjct: 235 GSGVAGGGSGG 245
Score = 34.7 bits (78), Expect = 0.066
Identities = 45/179 (25%), Positives = 62/179 (34%), Gaps = 26/179 (14%)
Query: 5 SGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKG------------------QRP 46
SG +S S S + G PG G G AG +G G ++
Sbjct: 209 SGGEGASPSPSSSSAGKTPGTGSRN-SGSGVAGGGSGGGGSYWKEGCLQSELIQFHLKKE 267
Query: 47 PGPGRVRAAQARARRGGG--ARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRP 104
AAQ A+ GGG +R P G A A+PM ++A GP + A
Sbjct: 268 RAAAAAAAAQMHAKNGGGSSSRSSPVSGPPAVCETLAVASASPM-AAAAEGPQQSAEGSA 326
Query: 105 SSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLR 163
S A PSS P + E K R + + E D++ E +R
Sbjct: 327 SGGGMQAAAPPSSQPH----PQQLQEQEEMQEEMEKLREENETLKNEIDELRTEMDEMR 381
Score = 31.6 bits (70), Expect = 0.56
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 19 IGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRA 78
+G G GGE +G G +PP P R RA++ GG+
Sbjct: 163 LGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGS------------- 209
Query: 79 ARGGARAAPMPSSAPRGPT 97
GG A+P PSS+ G T
Sbjct: 210 --GGEGASPSPSSSSAGKT 226
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 46.6 bits (109), Expect = 2e-05
Identities = 56/149 (37%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 46 PPGPGRVRAAQARARRGGGARERPAEGARGPR-AARGGAR-----AAPMPSSAPRG---- 95
PP P A ++ AR G AEG R R A RGG R AAP ++A G
Sbjct: 110 PPAPQAFLAQRSPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPS 169
Query: 96 PTEPALRRPSSAER-PLAQAPSSSASVGR--APGAMASPSRS-SEATGKPRGRDGRPRRE 151
P +P SSA R P A+ S A R AP A +PSRS S+AT P R RR
Sbjct: 170 PADPG--STSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRR- 226
Query: 152 EDDVPPEEKRLRLLLEGGSAQPQDGEDGE 180
P R R GGSA P G+
Sbjct: 227 -PGAPRLLSRTRQRELGGSAAPSVAFSGD 254
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 46.6 bits (109), Expect = 2e-05
Identities = 62/209 (29%), Positives = 77/209 (36%), Gaps = 55/209 (26%)
Query: 46 PPGPGRVRA-AQARARRGGGARERPAEGA--------------------RGPRAARGGAR 84
PP PG VR+ ARA GGGA RP GA R PRA + A+
Sbjct: 351 PPRPGTVRSQLGARANEGGGA-PRPPAGARVFGVWARGRLRRGCHKCADRAPRAPKAAAK 409
Query: 85 AAPMPSSAPR----GPTEPALRRPSSAERPLAQAPSSSASV------------------- 121
AAP +A R T PA + A RP A +S SV
Sbjct: 410 AAPAKRTARRRXXXXDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLL 469
Query: 122 GRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGED 181
G A +P S+ P GRP R E+ E+R G A + + D
Sbjct: 470 GPVAPAACAPCASAPCAPAP-AASGRPPRAEE----LERRALAGAGGVGAAGAEPPNAGD 524
Query: 182 APRPGRVET----GTQTGGDGRGVS-DAG 205
+ G ET G +GG G S D+G
Sbjct: 525 PFKAGEAETNDTNGYSSGGGGHSPSADSG 553
Score = 32.7 bits (73), Expect = 0.25
Identities = 38/163 (23%), Positives = 53/163 (32%), Gaps = 41/163 (25%)
Query: 29 EVQGLARAGLATGKGQRPPGPGR-VRAAQARAR------RGGGARERPA----------- 70
E + LA AG G PP G +A +A GGG A
Sbjct: 502 ERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDED 561
Query: 71 ---------EGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASV 121
E ARG ARGG S +G E ++ + A P ++ V
Sbjct: 562 DDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPV 621
Query: 122 -------GRAPGAMASPSRSSEATGKPR-------GRDGRPRR 150
APG + + + KP+ + G+PRR
Sbjct: 622 APGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRR 664
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 46.6 bits (109), Expect = 2e-05
Identities = 56/149 (37%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 46 PPGPGRVRAAQARARRGGGARERPAEGARGPR-AARGGAR-----AAPMPSSAPRG---- 95
PP P A ++ AR G AEG R R A RGG R AAP ++A G
Sbjct: 110 PPAPQAFLAQRSPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPS 169
Query: 96 PTEPALRRPSSAER-PLAQAPSSSASVGR--APGAMASPSRS-SEATGKPRGRDGRPRRE 151
P +P SSA R P A+ S A R AP A +PSRS S+AT P R RR
Sbjct: 170 PADPG--STSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRR- 226
Query: 152 EDDVPPEEKRLRLLLEGGSAQPQDGEDGE 180
P R R GGSA P G+
Sbjct: 227 -PGAPRLLSRTRQRELGGSAAPSVAFSGD 254
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.2 bits (108), Expect = 2e-05
Identities = 52/173 (30%), Positives = 63/173 (36%), Gaps = 29/173 (16%)
Query: 24 GWGGEEVQ--GLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARG 81
GWGG+ + G+ + GL T R G G GGGAR P AR P + R
Sbjct: 176 GWGGQGAERLGVHQPGLPTHAALRGGGGGSEGG-------GGGARPSPPR-ARQPPSGRP 227
Query: 82 GARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAP--GAMASPSRSS---- 135
R + SA R AL R RP A +SS G A A A P+R
Sbjct: 228 RPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
Query: 136 -EATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGR 187
A G+ RG + R P G Q G GE+ P R
Sbjct: 288 RRADGRARGGCAQLRAGTPSAP------------GGLQDCRGRQGEENAHPFR 328
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.2 bits (108), Expect = 2e-05
Identities = 52/173 (30%), Positives = 63/173 (36%), Gaps = 29/173 (16%)
Query: 24 GWGGEEVQ--GLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARG 81
GWGG+ + G+ + GL T R G G GGGAR P AR P + R
Sbjct: 176 GWGGQGAERLGVHQPGLPTHAALRGGGGGSEGG-------GGGARPSPPR-ARQPPSGRP 227
Query: 82 GARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAP--GAMASPSRSS---- 135
R + SA R AL R RP A +SS G A A A P+R
Sbjct: 228 RPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
Query: 136 -EATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGR 187
A G+ RG + R P G Q G GE+ P R
Sbjct: 288 RRADGRARGGCAQLRAGTPSAP------------GGLQDCRGRQGEENAHPFR 328
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.2 bits (108), Expect = 2e-05
Identities = 52/173 (30%), Positives = 63/173 (36%), Gaps = 29/173 (16%)
Query: 24 GWGGEEVQ--GLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARG 81
GWGG+ + G+ + GL T R G G GGGAR P AR P + R
Sbjct: 176 GWGGQGAERLGVHQPGLPTHAALRGGGGGSEGG-------GGGARPSPPR-ARQPPSGRP 227
Query: 82 GARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAP--GAMASPSRSS---- 135
R + SA R AL R RP A +SS G A A A P+R
Sbjct: 228 RPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
Query: 136 -EATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGR 187
A G+ RG + R P G Q G GE+ P R
Sbjct: 288 RRADGRARGGCAQLRAGTPSAP------------GGLQDCRGRQGEENAHPFR 328
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 46.2 bits (108), Expect = 2e-05
Identities = 42/173 (24%), Positives = 63/173 (36%), Gaps = 25/173 (14%)
Query: 35 RAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPR 94
+ G G R P P + R GG + A G R P SA
Sbjct: 288 KTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGR--------------PGSAHS 333
Query: 95 GPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDD 154
P +P+ P ++ A AP+ A +P ++PS G+ G GR RR
Sbjct: 334 PPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRG-GRAAGGAGRRRRR--- 389
Query: 155 VPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAG 207
+R R ++ P+ G PRP +++ R SD+G+G
Sbjct: 390 -----RRRRRRSRSSASAPR--RRGRRRPRPAPPRGSSRSLSRARSSSDSGSG 435
Score = 43.5 bits (101), Expect = 1e-04
Identities = 58/188 (30%), Positives = 79/188 (42%), Gaps = 27/188 (14%)
Query: 6 GRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLAT--GKGQRPPGPGRVRAAQARARRGG 63
GRP S+ S + P V+ A A T +G+ P P R+A + RGG
Sbjct: 326 GRPGSAHSPPDKPSSPSP-----RVRDKAAAAAPTPPARGKESPSP---RSAPSSQGRGG 377
Query: 64 GARERPAEGARGPRAARGGARAAPMPSSAP--RGPTEPALRRPSSAERPLAQAPSSSAS- 120
R A GA R R R + +SAP RG P P + R L++A SSS S
Sbjct: 378 ----RAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSG 433
Query: 121 VGR-APGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDG 179
GR APG P G RG G +R ++ PP + G+ + G +G
Sbjct: 434 SGRGAPGPGPEP-------GSERGHGGHGKRAKER-PPRARPASTSPSPGAHGRRGGPEG 485
Query: 180 EDAPR-PG 186
+ + R PG
Sbjct: 486 KSSSRSPG 493
Score = 38.9 bits (89), Expect = 0.004
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 15/181 (8%)
Query: 43 GQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPS-----SAPRGPT 97
G R R R+++ + + ++RP + G R+ R + ++ PS S R P+
Sbjct: 217 GSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPS 276
Query: 98 EPALRRPSSAERPLAQAPSSSASVGRAPGA-MASPSR---SSEATGKPRGRDGRPRREED 153
+ + + +Q S S S + G+ SP R S + +G GR G D
Sbjct: 277 RLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPD 336
Query: 154 DVPPEEKRLRLLLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRV 213
P R+ + +A P G+++P P + GG G GAG R R
Sbjct: 337 --KPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAG----GAGRRRRRR 390
Query: 214 R 214
R
Sbjct: 391 R 391
Score = 33.9 bits (76), Expect = 0.11
Identities = 38/144 (26%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 23 PGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGG 82
PG G E G +RPP R A P+ GA G R G
Sbjct: 439 PGPGPEPGSERGHGGHGKRAKERPP-------------RARPASTSPSPGAHGRRGGPEG 485
Query: 83 ARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPR 142
++ P PR + + R PS + A+ S S R+P SR + G+ R
Sbjct: 486 KSSSRSPGPHPR--SWSSSRSPSKSRSRSAEKRPHSPS--RSPSPKKPLSRDKDGEGRAR 541
Query: 143 GRDG---RPRREEDDVPPEEKRLR 163
+ R RR P KR R
Sbjct: 542 HSEAEATRARRRSRSYSPIRKRRR 565
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 45.8 bits (107), Expect = 3e-05
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 27 GEEVQGLARAGL----ATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAA--- 79
G + G A A L TG QR P PGR RAA + GG RER A + G ++A
Sbjct: 32 GSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQG-DGGARRERAAAESLGTQSATLG 90
Query: 80 --RGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQA----PSSSASVGRAPGAMA---- 129
RGG R+ P+ GP R + ER A P S++S P +
Sbjct: 91 PRRGGLRSRTDPAFG-AGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTF 149
Query: 130 --SPSRSSEATGKPRGRDGRP 148
P ++S P GR GRP
Sbjct: 150 VFPPGKTSAPRPSPGGRRGRP 170
Score = 32.7 bits (73), Expect = 0.25
Identities = 51/187 (27%), Positives = 61/187 (32%), Gaps = 16/187 (8%)
Query: 8 PFSSSSLSRETIGVQPGWGGEEVQGLARA-GLATGKGQRPPGPGRV-RAAQARARRGGGA 65
P S R + GW R G G + P G+ A+ + +R GA
Sbjct: 190 PRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGA 249
Query: 66 RERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAP 125
ER RGPR+ G P R L R S P S A R
Sbjct: 250 -ERVLNNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDS----PQVPRSGSWARPCREQ 304
Query: 126 G-----AMASPSRSSEATGKPRGRDGRPRREEDDVP-PEEKRLRLLLEGGSAQPQDGEDG 179
G A+ SP+ S A R R E V RL LL G P+ D
Sbjct: 305 GHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPG---PEGTSDA 361
Query: 180 EDAPRPG 186
AP PG
Sbjct: 362 ARAPAPG 368
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 45.8 bits (107), Expect = 3e-05
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 27 GEEVQGLARAGL----ATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAA--- 79
G + G A A L TG QR P PGR RAA + GG RER A + G ++A
Sbjct: 32 GSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQG-DGGARRERAAAESLGTQSATLG 90
Query: 80 --RGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQA----PSSSASVGRAPGAMA---- 129
RGG R+ P+ GP R + ER A P S++S P +
Sbjct: 91 PRRGGLRSRTDPAFG-AGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTF 149
Query: 130 --SPSRSSEATGKPRGRDGRP 148
P ++S P GR GRP
Sbjct: 150 VFPPGKTSAPRPSPGGRRGRP 170
Score = 33.5 bits (75), Expect = 0.15
Identities = 51/187 (27%), Positives = 62/187 (33%), Gaps = 16/187 (8%)
Query: 8 PFSSSSLSRETIGVQPGWGGEEVQGLARA-GLATGKGQRPPGPGRV-RAAQARARRGGGA 65
P S R + GW R G G + P G+ A+ + +R GA
Sbjct: 190 PRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGA 249
Query: 66 RERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAP 125
ER + RGPR+ G P R L R S P S A R
Sbjct: 250 -ERVLDNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDS----PQVPRSGSWARPCREQ 304
Query: 126 G-----AMASPSRSSEATGKPRGRDGRPRREEDDVP-PEEKRLRLLLEGGSAQPQDGEDG 179
G A+ SP+ S A R R E V RL LL G P+ D
Sbjct: 305 GHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPG---PEGTSDA 361
Query: 180 EDAPRPG 186
AP PG
Sbjct: 362 ARAPAPG 368
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 45.8 bits (107), Expect = 3e-05
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 27 GEEVQGLARAGL----ATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAA--- 79
G + G A A L TG QR P PGR RAA + GG RER A + G ++A
Sbjct: 32 GSSLCGSAEALLLSPHVTGAAQRSPTPGRARAAPQQG-DGGARRERAAAESLGTQSATLG 90
Query: 80 --RGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQA----PSSSASVGRAPGAMA---- 129
RGG R+ P+ GP R + ER A P S++S P +
Sbjct: 91 PRRGGLRSRTDPAFG-AGPLPLVSRLGHAGERGSPGAGDVNPVSASSPPGRPDPLLLTTF 149
Query: 130 --SPSRSSEATGKPRGRDGRP 148
P ++S P GR GRP
Sbjct: 150 VFPPGKTSAPRPSPGGRRGRP 170
Score = 33.5 bits (75), Expect = 0.15
Identities = 51/187 (27%), Positives = 62/187 (33%), Gaps = 16/187 (8%)
Query: 8 PFSSSSLSRETIGVQPGWGGEEVQGLARA-GLATGKGQRPPGPGRV-RAAQARARRGGGA 65
P S R + GW R G G + P G+ A+ + +R GA
Sbjct: 190 PRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGA 249
Query: 66 RERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAP 125
ER + RGPR+ G P R L R S P S A R
Sbjct: 250 -ERVLDNGRGPRSRLPGLAGGVEPPGWSRERAGAGLSRDS----PQVPRSGSWARPCREQ 304
Query: 126 G-----AMASPSRSSEATGKPRGRDGRPRREEDDVP-PEEKRLRLLLEGGSAQPQDGEDG 179
G A+ SP+ S A R R E V RL LL G P+ D
Sbjct: 305 GHPAVLALQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPG---PEGTSDA 361
Query: 180 EDAPRPG 186
AP PG
Sbjct: 362 ARAPAPG 368
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,815,765
Number of Sequences: 37866
Number of extensions: 805146
Number of successful extensions: 10381
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 1655
Number of HSP's that attempted gapping in prelim test: 6588
Number of HSP's gapped (non-prelim): 4401
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.