Guide to the Human Genome
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Name: LOC728650 Sequence: fasta or formatted (221aa) NCBI GI: 239744552
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {202aa} PREDICTED: hypothetical protein
alt prot {202aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         30           2
 C cysteine            0.5          1           1
 D aspartate           4.1          9           2
 E glutamate           7.7         17           2
 F phenylalanine       0.5          1           1
 G glycine            18.1         40           3
 H histidine           0.0          0           0
 I isoleucine          0.5          1           1
 K lysine              1.4          3           1
 L leucine             4.5         10           3
 M methionine          1.4          3           1
 N asparagine          0.5          1           1
 P proline            10.9         24           2
 Q glutamine           3.6          8           1
 R arginine           15.4         34           2
 S serine              9.5         21           4
 T threonine           3.6          8           1
 V valine              4.1          9           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292143          0.516   PREDICTED: hypothetical protein 
LOC100132261          0.499   PREDICTED: similar to hCG2023245 
LOC651856             0.496   PREDICTED: similar to hCG2023245 
LOC728650             0.372   PREDICTED: hypothetical protein 
LOC728650             0.365   PREDICTED: hypothetical protein 
LOC100291206          0.255   PREDICTED: hypothetical protein XP_002347014 
CHSY3                 0.064   chondroitin sulfate synthase 3 
COL11A1               0.060   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.060   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.060   alpha 1 type XI collagen isoform A preproprotein [Ho...
ZNF469                0.060   zinc finger protein 469 
COL7A1                0.057   alpha 1 type VII collagen precursor 
SALL3                 0.053   sal-like 3 
NFKBIE                0.053   nuclear factor of kappa light polypeptide gene enhan...
LOC643355             0.053   PREDICTED: hypothetical protein 
LOC100290023          0.053   PREDICTED: hypothetical protein XP_002348147 
LOC643355             0.053   PREDICTED: hypothetical protein 
LOC643355             0.053   PREDICTED: hypothetical protein 
C6orf174              0.053   hypothetical protein LOC387104 
LOC100292122          0.053   PREDICTED: hypothetical protein XP_002345138 
NKX1-1                0.053   PREDICTED: NK1 homeobox 1 
LOC100286986          0.053   PREDICTED: hypothetical protein XP_002344191 
LOC338758             0.050   PREDICTED: hypothetical protein 
LOC338758             0.050   PREDICTED: hypothetical protein 
LOC338758             0.050   PREDICTED: hypothetical protein 
FLJ37078              0.050   hypothetical protein LOC222183 
LOC100130128          0.050   PREDICTED: hypothetical protein 
LOC100130128          0.050   PREDICTED: hypothetical protein 
LOC100130128          0.050   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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