Guide to the Human Genome
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Name: LOC728650 Sequence: fasta or formatted (202aa) NCBI GI: 239755739
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {221aa} PREDICTED: hypothetical protein
alt prot {202aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.3         33           3
 C cysteine            1.0          2           1
 D aspartate           1.5          3           1
 E glutamate           4.5          9           2
 F phenylalanine       2.5          5           3
 G glycine            17.3         35           3
 H histidine           2.0          4           1
 I isoleucine          0.5          1           1
 K lysine              2.0          4           1
 L leucine             4.5          9           1
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline             8.4         17           2
 Q glutamine           7.4         15           1
 R arginine           19.3         39           2
 S serine              6.4         13           4
 T threonine           2.5          5           1
 V valine              1.5          3           1
 W tryptophan          2.0          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728650             0.990   PREDICTED: hypothetical protein 
LOC728650             0.390   PREDICTED: hypothetical protein 
LOC100291206          0.151   PREDICTED: hypothetical protein XP_002347014 
LOC100292370          0.077   PREDICTED: hypothetical protein 
LOC100293129          0.069   PREDICTED: hypothetical protein 
LOC100292035          0.069   PREDICTED: hypothetical protein XP_002345623 
LOC728767             0.059   PREDICTED: hypothetical protein 
LOC728767             0.059   PREDICTED: hypothetical protein 
LOC100292262          0.059   PREDICTED: hypothetical protein 
LOC100130128          0.051   PREDICTED: hypothetical protein 
LOC100130128          0.051   PREDICTED: hypothetical protein 
FLJ37078              0.051   hypothetical protein LOC222183 
LOC100130128          0.051   PREDICTED: hypothetical protein 
LOC441009             0.048   PREDICTED: hypothetical protein 
LOC441009             0.048   PREDICTED: hypothetical protein 
LOC441009             0.048   PREDICTED: hypothetical protein 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
LOC100289763          0.046   PREDICTED: hypothetical protein XP_002347867 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
LOC100289681          0.046   PREDICTED: hypothetical protein XP_002343623 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
LOC643355             0.046   PREDICTED: hypothetical protein 
LOC643355             0.046   PREDICTED: hypothetical protein 
LOC100292172          0.043   PREDICTED: hypothetical protein 
LOC643355             0.043   PREDICTED: hypothetical protein 
LOC100131455          0.043   PREDICTED: hypothetical protein 
XYLT1                 0.043   xylosyltransferase I 
LOC100127891          0.043   PREDICTED: hypothetical protein 
LOC100292383          0.043   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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