Guide to the Human Genome
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Name: LOC651856 Sequence: fasta or formatted (329aa) NCBI GI: 239742114
Description:

PREDICTED: similar to hCG2023245

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         31           2
 C cysteine            1.5          5           1
 D aspartate           6.1         20           2
 E glutamate           8.5         28           3
 F phenylalanine       2.4          8           2
 G glycine            11.2         37           2
 H histidine           0.6          2           1
 I isoleucine          1.2          4           1
 K lysine              3.6         12           2
 L leucine             7.6         25           3
 M methionine          2.4          8           1
 N asparagine          1.8          6           1
 P proline            10.3         34           2
 Q glutamine           4.3         14           2
 R arginine            9.4         31           2
 S serine              9.4         31           3
 T threonine           3.3         11           1
 V valine              4.6         15           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2023245 
LOC100132261          0.671   PREDICTED: similar to hCG2023245 
LOC100292143          0.477   PREDICTED: hypothetical protein 
LOC728650             0.324   PREDICTED: hypothetical protein 
C11orf2               0.179   chromosome 11 open reading frame2 
LOC100291206          0.126   PREDICTED: hypothetical protein XP_002347014 
SAMD1                 0.033   sterile alpha motif domain containing 1 
FLJ37078              0.031   hypothetical protein LOC222183 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
TAF4                  0.030   TBP-associated factor 4 
DDN                   0.030   dendrin 
PCLO                  0.030   piccolo isoform 2 
PCLO                  0.030   piccolo isoform 1 
LOC100289625          0.030   PREDICTED: hypothetical protein XP_002342465 
BAHCC1                0.030   BAH domain and coiled-coil containing 1 
COL16A1               0.028   alpha 1 type XVI collagen precursor 
REXO1                 0.028   transcription elongation factor B polypeptide 3 bin...
PRR12                 0.028   proline rich 12 
LOC388279             0.028   PREDICTED: hypothetical protein 
LMTK3                 0.028   lemur tyrosine kinase 3 
GPR153                0.028   G protein-coupled receptor 153 
LOC100292745          0.026   PREDICTED: hypothetical protein 
LOC100290074          0.026   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.026   PREDICTED: hypothetical protein XP_002342693 
MLL4                  0.026   myeloid/lymphoid or mixed-lineage leukemia 4 
SYN1                  0.026   synapsin I isoform Ia 
SYN1                  0.026   synapsin I isoform Ib 
SFPQ                  0.026   splicing factor proline/glutamine rich (polypyrimidin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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