Guide to the Human Genome
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Name: LOC728650 Sequence: fasta or formatted (202aa) NCBI GI: 239750250
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {221aa} PREDICTED: hypothetical protein
alt prot {202aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.8         32           3
 C cysteine            1.0          2           1
 D aspartate           1.5          3           1
 E glutamate           4.5          9           2
 F phenylalanine       2.5          5           3
 G glycine            17.3         35           3
 H histidine           2.0          4           1
 I isoleucine          0.5          1           1
 K lysine              2.0          4           1
 L leucine             4.0          8           1
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline             8.4         17           2
 Q glutamine           7.4         15           1
 R arginine           19.8         40           2
 S serine              6.4         13           4
 T threonine           3.0          6           1
 V valine              1.5          3           1
 W tryptophan          2.0          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728650             0.987   PREDICTED: hypothetical protein 
LOC728650             0.397   PREDICTED: hypothetical protein 
LOC100291206          0.145   PREDICTED: hypothetical protein XP_002347014 
LOC100292370          0.079   PREDICTED: hypothetical protein 
LOC100293129          0.066   PREDICTED: hypothetical protein 
LOC100292262          0.064   PREDICTED: hypothetical protein 
LOC100292035          0.064   PREDICTED: hypothetical protein XP_002345623 
LOC100130128          0.064   PREDICTED: hypothetical protein 
LOC100130128          0.064   PREDICTED: hypothetical protein 
LOC100130128          0.061   PREDICTED: hypothetical protein 
LOC728767             0.056   PREDICTED: hypothetical protein 
LOC728767             0.056   PREDICTED: hypothetical protein 
SRRM2                 0.053   splicing coactivator subunit SRm300 
FLJ37078              0.051   hypothetical protein LOC222183 
LOC100289763          0.048   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.048   PREDICTED: hypothetical protein XP_002343623 
LOC441009             0.048   PREDICTED: hypothetical protein 
LOC441009             0.048   PREDICTED: hypothetical protein 
LOC441009             0.048   PREDICTED: hypothetical protein 
LOC100292172          0.048   PREDICTED: hypothetical protein 
LOC100292383          0.048   PREDICTED: hypothetical protein 
LOC100292062          0.046   PREDICTED: hypothetical protein XP_002346314 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
LOC643355             0.046   PREDICTED: hypothetical protein 
LOC643355             0.046   PREDICTED: hypothetical protein 
LOC100291634          0.043   PREDICTED: hypothetical protein XP_002346062 
LOC643355             0.043   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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