Guide to the Human Genome
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Name: LOC100291206 Sequence: fasta or formatted (190aa) NCBI GI: 239749365
Description:

PREDICTED: hypothetical protein XP_002347014

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         19           2
 C cysteine            0.5          1           1
 D aspartate           4.7          9           2
 E glutamate           8.4         16           2
 F phenylalanine       2.1          4           1
 G glycine            16.3         31           3
 H histidine           1.1          2           1
 I isoleucine          0.5          1           1
 K lysine              1.6          3           1
 L leucine             6.3         12           3
 M methionine          1.1          2           1
 N asparagine          0.0          0           0
 P proline             9.5         18           2
 Q glutamine           6.3         12           1
 R arginine           14.2         27           2
 S serine              7.9         15           2
 T threonine           6.3         12           1
 V valine              0.5          1           1
 W tryptophan          2.1          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347014 
LOC728650             0.288   PREDICTED: hypothetical protein 
LOC100292143          0.240   PREDICTED: hypothetical protein 
LOC100132261          0.221   PREDICTED: similar to hCG2023245 
LOC651856             0.218   PREDICTED: similar to hCG2023245 
LOC728650             0.159   PREDICTED: hypothetical protein 
LOC728650             0.154   PREDICTED: hypothetical protein 
BHLHE22               0.046   basic helix-loop-helix domain containing, class B, 5...
TRIO                  0.046   triple functional domain (PTPRF interacting) 
LOC100290372          0.043   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.043   PREDICTED: hypothetical protein XP_002342652 
C19orf26              0.043   downstream of Stk11 
RPGR                  0.043   retinitis pigmentosa GTPase regulator isoform C [Hom...
FLJ37078              0.043   hypothetical protein LOC222183 
LOC100292370          0.040   PREDICTED: hypothetical protein 
DIDO1                 0.040   death inducer-obliterator 1 isoform c 
TUSC1                 0.040   tumor suppressor candidate 1 
FBXO41                0.040   F-box protein 41 
ASXL1                 0.038   additional sex combs like 1 
LOC100291943          0.038   PREDICTED: hypothetical protein XP_002344929 
LOC100290716          0.038   PREDICTED: hypothetical protein XP_002347730 
LOC100288794          0.038   PREDICTED: hypothetical protein XP_002343507 
LOC100293604          0.035   PREDICTED: hypothetical protein 
LOC100290649          0.035   PREDICTED: hypothetical protein XP_002348220 
LOC100289721          0.035   PREDICTED: hypothetical protein XP_002347280 
LOC100289318          0.035   PREDICTED: hypothetical protein XP_002343871 
LOC100287837          0.035   PREDICTED: hypothetical protein XP_002343157 
LOC100289661          0.035   PREDICTED: hypothetical protein 
LOC100131091          0.035   PREDICTED: hypothetical protein 
LOC100289661          0.035   PREDICTED: hypothetical protein XP_002343723 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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