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Search of human proteins with 239744431
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744431 PREDICTED: hypothetical protein XP_002343158 [Homo
sapiens]
(92 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755629 PREDICTED: hypothetical protein [Homo sapiens] 191 1e-49
gi|239744431 PREDICTED: hypothetical protein XP_002343158 [Homo ... 191 1e-49
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 31 0.19
gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo ... 31 0.25
gi|38570105 Ras-interacting protein 1 [Homo sapiens] 31 0.25
gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens] 30 0.55
gi|6631075 BCL2-associated athanogene 4 [Homo sapiens] 30 0.55
gi|155969701 espin-like [Homo sapiens] 30 0.55
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 29 0.72
gi|239757425 PREDICTED: hypothetical protein XP_002345433 [Homo ... 29 0.93
gi|239755851 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239751942 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239750367 PREDICTED: hypothetical protein XP_002347407 [Homo ... 29 0.93
gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo ... 29 0.93
gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo ... 29 0.93
gi|4557595 forkhead box F2 [Homo sapiens] 29 0.93
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 28 1.2
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 28 1.2
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 28 1.2
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 28 1.2
gi|52486734 family with sequence similarity 19 (chemokine (C-C m... 28 1.2
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapi... 28 1.6
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 28 1.6
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 28 1.6
gi|14589860 aspartate beta-hydroxylase isoform c [Homo sapiens] 28 2.1
gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens] 28 2.1
gi|239757070 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
>gi|239755629 PREDICTED: hypothetical protein [Homo sapiens]
Length = 92
Score = 191 bits (485), Expect = 1e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MCSPSRRENTAVRAAVSVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRG 60
MCSPSRRENTAVRAAVSVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRG
Sbjct: 1 MCSPSRRENTAVRAAVSVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRG 60
Query: 61 PGWGLRGGAGPASSYLGAETLEQPPFRGDRPA 92
PGWGLRGGAGPASSYLGAETLEQPPFRGDRPA
Sbjct: 61 PGWGLRGGAGPASSYLGAETLEQPPFRGDRPA 92
>gi|239744431 PREDICTED: hypothetical protein XP_002343158 [Homo
sapiens]
Length = 92
Score = 191 bits (485), Expect = 1e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MCSPSRRENTAVRAAVSVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRG 60
MCSPSRRENTAVRAAVSVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRG
Sbjct: 1 MCSPSRRENTAVRAAVSVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRG 60
Query: 61 PGWGLRGGAGPASSYLGAETLEQPPFRGDRPA 92
PGWGLRGGAGPASSYLGAETLEQPPFRGDRPA
Sbjct: 61 PGWGLRGGAGPASSYLGAETLEQPPFRGDRPA 92
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 31.2 bits (69), Expect = 0.19
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 20 WRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPG--WGLRGGAGPASSYLG 77
WRR + +S+ Q S++ + +A L P G GPG G GGA P S+LG
Sbjct: 191 WRRQEKLEVSSMKLQDSPLLSFSR----SPPSATLSPLGAGPGSGGGPAGGALPLESWLG 246
Query: 78 AETLEQPPFRG 88
PP G
Sbjct: 247 ------PPLPG 251
>gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo
sapiens]
Length = 233
Score = 30.8 bits (68), Expect = 0.25
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 59 RGPGWGLRGGAGPAS 73
R P WG+RGGAGPAS
Sbjct: 176 RLPAWGVRGGAGPAS 190
>gi|38570105 Ras-interacting protein 1 [Homo sapiens]
Length = 963
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 21 RRARRTSRASVDSQSQGARSWASQWGSAQAA---ARLKPRGRGPGWGLRGGAG 70
RR + + + DS+ GA SW Q ++AA A L G G G G G+G
Sbjct: 261 RRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASPGPGTGSGAPAGSG 313
>gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens]
Length = 415
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 42 ASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGAETLEQ 83
AS+W + KP R PG G G AGP AE Q
Sbjct: 2 ASRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVRAQ 43
>gi|6631075 BCL2-associated athanogene 4 [Homo sapiens]
Length = 457
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 40 SWASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGAETLEQPPF 86
SW + G L G G G+ GGA P G EQPP+
Sbjct: 49 SWRVRGGGPAETTWLGEGGGGDGYYPSGGAWPEPGRAGGSHQEQPPY 95
>gi|155969701 espin-like [Homo sapiens]
Length = 1005
Score = 29.6 bits (65), Expect = 0.55
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 19 GWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGA 78
GW R +A D + G R+W G AR + P W G + LG
Sbjct: 893 GWEAVRAFHKAVTDEVAAGRRAWTD--GFEDIKARFFGSSQRPAWDTEPGRKSGLTLLGP 950
Query: 79 ETLEQPPFRGDRP 91
P G P
Sbjct: 951 LPHAAVPCSGPEP 963
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 29.3 bits (64), Expect = 0.72
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 56 PRGRGPGWGLRGGAGPASSYLGAETLEQPPFRG 88
PR RGP GLRGG G + G PP RG
Sbjct: 100 PRSRGPPRGLRGGRGGSGGTRG------PPSRG 126
>gi|239757425 PREDICTED: hypothetical protein XP_002345433 [Homo
sapiens]
Length = 67
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 33 SQSQGARSWASQWGSAQAAARLKPRGR-GPGWGLRGGAGPASSYLGAETLEQPPFRGD 89
S++ G + GSA A PR R GP LR A PA+ A PP+RG+
Sbjct: 5 SRALGGTAGDEDSGSASA-----PRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGE 57
>gi|239755851 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 19 GW-RRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLR----GGAGPAS 73
GW RR S+ Q +GA + G K GRG WG + G AG AS
Sbjct: 57 GWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEAS 116
Query: 74 SYLG 77
S G
Sbjct: 117 SQRG 120
>gi|239751942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 33 SQSQGARSWASQWGSAQAAARLKPRGR-GPGWGLRGGAGPASSYLGAETLEQPPFRGD 89
S++ G + GSA A PR R GP LR A PA+ A PP+RG+
Sbjct: 5 SRALGGTAGDEDSGSASA-----PRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGE 57
>gi|239750367 PREDICTED: hypothetical protein XP_002347407 [Homo
sapiens]
Length = 121
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 19 GW-RRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLR----GGAGPAS 73
GW RR S+ Q +GA + G K GRG WG + G AG AS
Sbjct: 57 GWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEAS 116
Query: 74 SYLG 77
S G
Sbjct: 117 SQRG 120
>gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo
sapiens]
Length = 67
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 33 SQSQGARSWASQWGSAQAAARLKPRGR-GPGWGLRGGAGPASSYLGAETLEQPPFRGD 89
S++ G + GSA A PR R GP LR A PA+ A PP+RG+
Sbjct: 5 SRALGGTAGDEDSGSASA-----PRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGE 57
>gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo
sapiens]
Length = 121
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 19 GW-RRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLR----GGAGPAS 73
GW RR S+ Q +GA + G K GRG WG + G AG AS
Sbjct: 57 GWARRLPAWVPRSLREQEEGAGRTREEEGGTSGRESRKKMGRGREWGRQRRKTGKAGEAS 116
Query: 74 SYLG 77
S G
Sbjct: 117 SQRG 120
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 28.9 bits (63), Expect = 0.93
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 26 TSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGAETLEQPP 85
+S +S S S + S +S SA +AA G G G G GGA ASS G E+PP
Sbjct: 46 SSSSSSSSASCASSSSSSNSASAPSAACKSAGGGGAGAG-SGGAKKASS--GLRRPEKPP 102
Query: 86 F 86
+
Sbjct: 103 Y 103
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 52 ARLKPRGRGPGWGLRGGA-GPASSYLGAETLEQP 84
A+ +PR P W +RGGA GP S+ +G+ P
Sbjct: 83 AQARPRPLRPPWEVRGGARGPCSAPVGSRASSGP 116
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 20 WRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLRGGAGP 71
WRR R R + S AR A+ WG + + G G G R GA P
Sbjct: 37 WRRPPRRQRPGPAAPSPPARG-AAAWGRSGGGPAAQSGGDGGGLPRRAGAEP 87
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 52 ARLKPRGRGPGWGLRGGA-GPASSYLGAETLEQP 84
A+ +PR P W +RGGA GP S+ +G+ P
Sbjct: 101 AQARPRPLRPPWEVRGGARGPCSAPVGSRASSGP 134
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 52 ARLKPRGRGPGWGLRGGA-GPASSYLGAETLEQP 84
A+ +PR P W +RGGA GP S+ +G+ P
Sbjct: 101 AQARPRPLRPPWEVRGGARGPCSAPVGSRASSGP 134
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 MCSPSRRENTAVRAAVSVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRG 60
+ SP + E +V A +V + S D S G+R +S+ + +++ + P G
Sbjct: 434 LLSPGQAERVSVGKAGTVSPGKEDPVSSRREDPISAGSRKTSSEKVNPESSGKTNPVSSG 493
Query: 61 PGWGLR-GGAGPASS 74
PG G AGP S+
Sbjct: 494 PGDPRSLGTAGPPSA 508
>gi|52486734 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A3 isoform 2 [Homo sapiens]
Length = 169
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 17 SVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARL 54
SV R R A+VD++S+ RS S WGS RL
Sbjct: 131 SVRCSRTCRDGAAAVDTKSKPPRSHDSSWGSRPGQERL 168
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 6 RRENTAVRAAVS-VGWRRARRTSRASV----------DSQSQGAR-SWASQWGSAQAAAR 53
RR+ AV A S VG ++R+ +A + QS+G + QWG AAA+
Sbjct: 527 RRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAK 586
Query: 54 LKPRG-RGPGWGLRGGAGPASSYLG 77
+ G + PGW + AG S G
Sbjct: 587 TRGGGDKQPGW-QKAAAGVTKSRSG 610
>gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo
sapiens]
Length = 631
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 41 WASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGAETLEQPPFRGDR 90
WA +W A+A PR G W +RG G S + G + P G R
Sbjct: 4 WAPEWKRAEA----NPRDLGASWDVRGSRG--SGWSGPFGHQGPRAAGSR 47
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 5 SRRENTAVRAAVSVGWRRARRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGW 63
SR++ + S W R + S D + + S +S +GS + +R + RGRG +
Sbjct: 36 SRKKGGRKSRSKSRSWSRDLQPRSHSYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSY 94
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 28 RASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLG------AETL 81
R+ DS++ + + G A +PR RGP GA P YL A T+
Sbjct: 129 RSPPDSEAYYGETDSDADGPATQEKPRRPRRRGPTRPTPPGAPPDEVYLSDSPAEPAPTI 188
Query: 82 EQPPFRGD 89
PP +GD
Sbjct: 189 PGPPSQGD 196
>gi|14589860 aspartate beta-hydroxylase isoform c [Homo sapiens]
Length = 313
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 24 RRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSY 75
R+ +++S +S S G+ S ++ GS+ AR + + G G +GG S +
Sbjct: 4 RKNAKSSGNSSSSGSGSGSTSAGSSSPGARRETKHGGHKNGRKGGLSGTSFF 55
>gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens]
Length = 758
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 24 RRTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSY 75
R+ +++S +S S G+ S ++ GS+ AR + + G G +GG S +
Sbjct: 4 RKNAKSSGNSSSSGSGSGSTSAGSSSPGARRETKHGGHKNGRKGGLSGTSFF 55
>gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 25 RTSRASVDSQSQGARSWASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGAETLEQP 84
R+ RA + QGA+ WA+ ++AA GR GLR GAG E P
Sbjct: 57 RSGRAG--AAGQGAQGWAAARRESRAAG-----GRLECLGLRAGAGRGGGE-EEEPARAP 108
Query: 85 PFRG 88
P RG
Sbjct: 109 PRRG 112
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 37 GARSWASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGAETLEQP 84
G R A QW + PR G G+RGG P + G+ T +P
Sbjct: 282 GERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRAR--GSSTCLRP 327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.127 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,109,845
Number of Sequences: 37866
Number of extensions: 178763
Number of successful extensions: 1121
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1080
Number of HSP's gapped (non-prelim): 88
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.