Guide to the Human Genome
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Name: LOC100287870 Sequence: fasta or formatted (92aa) NCBI GI: 239744431
Description:

PREDICTED: hypothetical protein XP_002343158

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.3         15           3
 C cysteine            1.1          1           1
 D aspartate           2.2          2           1
 E glutamate           3.3          3           1
 F phenylalanine       1.1          1           1
 G glycine            13.0         12           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              1.1          1           1
 L leucine             4.3          4           1
 M methionine          1.1          1           1
 N asparagine          1.1          1           1
 P proline             7.6          7           2
 Q glutamine           5.4          5           1
 R arginine           16.3         15           2
 S serine             13.0         12           2
 T threonine           3.3          3           1
 V valine              4.3          4           1
 W tryptophan          4.3          4           1
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343158 
LOC100293519          1.000   PREDICTED: hypothetical protein 
RAX                   0.036   retina and anterior neural fold homeobox 
LOC100292057          0.036   PREDICTED: hypothetical protein XP_002345830 
RASIP1                0.036   Ras-interacting protein 1 
PDSS1                 0.030   prenyl diphosphate synthase, subunit 1 
BAG4                  0.030   BCL2-associated athanogene 4 
ESPNL                 0.030   espin-like 
RBMX                  0.024   RNA binding motif protein, X-linked 
LOC100291996          0.024   PREDICTED: hypothetical protein XP_002345433 
LOC100293384          0.024   PREDICTED: hypothetical protein 
LOC100289507          0.024   PREDICTED: hypothetical protein 
LOC100289983          0.024   PREDICTED: hypothetical protein XP_002347407 
LOC100289507          0.024   PREDICTED: hypothetical protein XP_002344219 
LOC100288706          0.024   PREDICTED: hypothetical protein XP_002343233 
FOXF2                 0.024   forkhead box F2 
LOC100292058          0.018   PREDICTED: hypothetical protein XP_002344766 
LOC284988             0.018   PREDICTED: hypothetical protein 
LOC100290367          0.018   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.018   PREDICTED: hypothetical protein XP_002343287 
GPRIN1                0.018   G protein-regulated inducer of neurite outgrowth 1 ...
FAM19A3               0.018   family with sequence similarity 19 (chemokine (C-C m...
LOC100292370          0.018   PREDICTED: hypothetical protein 
DDX53                 0.018   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
RSRC1                 0.018   arginine/serine-rich coiled-coil 1 
SYNPO2L               0.018   synaptopodin 2-like isoform a 
ASPH                  0.018   aspartate beta-hydroxylase isoform c 
ASPH                  0.018   aspartate beta-hydroxylase isoform a 
LOC100293935          0.012   PREDICTED: hypothetical protein 
LOC643355             0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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