Guide to the Human Genome
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Name: LOC100289507 Sequence: fasta or formatted (67aa) NCBI GI: 239746425
Description:

PREDICTED: hypothetical protein XP_002344219

Not currently referenced in the text

Other entries for this name:
alt mRNA {67aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            26.9         18           6
 C cysteine            1.5          1           1
 D aspartate           3.0          2           1
 E glutamate           4.5          3           1
 F phenylalanine       4.5          3           2
 G glycine            13.4          9           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             6.0          4           1
 M methionine          1.5          1           1
 N asparagine          0.0          0           0
 P proline            11.9          8           2
 Q glutamine           1.5          1           1
 R arginine           13.4          9           3
 S serine              9.0          6           1
 T threonine           1.5          1           1
 V valine              0.0          0           0
 W tryptophan          1.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344219 
LOC100291996          1.000   PREDICTED: hypothetical protein XP_002345433 
LOC100289507          1.000   PREDICTED: hypothetical protein 
TEAD4                 0.115   TEA domain family member 4 isoform 3 
TEAD4                 0.115   TEA domain family member 4 isoform 2 
TEAD4                 0.115   TEA domain family member 4 isoform 1 
LOC100290783          0.088   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.088   PREDICTED: hypothetical protein XP_002343435 
FLJ31945              0.080   PREDICTED: hypothetical protein 
ZSWIM6                0.071   zinc finger, SWIM-type containing 6 
LOC284988             0.062   PREDICTED: hypothetical protein 
LOC100286931          0.062   PREDICTED: hypothetical protein XP_002342998 
SAMD1                 0.062   sterile alpha motif domain containing 1 
LOC100291856          0.062   PREDICTED: hypothetical protein XP_002346216 
LOC729468             0.062   PREDICTED: similar to Putative PGM5-like protein 1 ...
LOC100290023          0.062   PREDICTED: hypothetical protein XP_002348147 
LOC100288067          0.062   PREDICTED: hypothetical protein XP_002342969 
KIAA1602              0.062   hypothetical protein LOC57701 
UNCX                  0.062   UNC homeobox 
SNTB2                 0.062   basic beta 2 syntrophin 
AIM1                  0.062   absent in melanoma 1 
NAT12                 0.062   N-acetyltransferase 12 
ZNF318                0.062   zinc finger protein 318 
TP53                  0.053   tumor protein p53 isoform b 
TP53                  0.053   tumor protein p53 isoform c 
TP53                  0.053   tumor protein p53 isoform a 
TP53                  0.053   tumor protein p53 isoform a 
RANBP9                0.053   RAN binding protein 9 
KRTAP4-6              0.053   PREDICTED: keratin associated protein 4.6 
INSM1                 0.053   insulinoma-associated 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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