Guide to the Human Genome
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Name: DDX53 Sequence: fasta or formatted (631aa) NCBI GI: 55749865
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 53

Referenced in:

DEAD / H Helicase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         35           2
 C cysteine            1.1          7           1
 D aspartate           5.9         37           2
 E glutamate           6.0         38           1
 F phenylalanine       2.5         16           1
 G glycine             6.5         41           2
 H histidine           1.6         10           1
 I isoleucine          8.4         53           3
 K lysine              7.1         45           2
 L leucine             7.1         45           2
 M methionine          2.5         16           1
 N asparagine          5.7         36           2
 P proline             4.6         29           2
 Q glutamine           4.9         31           2
 R arginine            6.8         43           2
 S serine              7.6         48           2
 T threonine           5.1         32           2
 V valine              6.8         43           2
 W tryptophan          1.4          9           1
 Y tyrosine            2.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
DDX43                 0.595   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX17                 0.250   DEAD box polypeptide 17 isoform 3 
DDX17                 0.250   DEAD box polypeptide 17 isoform 1 
DDX5                  0.247   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX46                 0.231   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX42                 0.205   DEAD box polypeptide 42 protein 
DDX42                 0.205   DEAD box polypeptide 42 protein 
DDX23                 0.190   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX3X                 0.183   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX3Y                 0.178   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.178   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX4                  0.177   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.177   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.177   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX41                 0.161   DEAD-box protein abstrakt 
DDX59                 0.145   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX54                 0.138   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.138   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX27                 0.137   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX47                 0.132   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX21                 0.131   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
DDX50                 0.129   nucleolar protein GU2 
DDX52                 0.129   ATP-dependent RNA helicase ROK1 isoform a 
DDX52                 0.129   ATP-dependent RNA helicase ROK1 isoform b 
DDX6                  0.126   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
EIF4A3                0.125   eukaryotic translation initiation factor 4A, isoform ...
EIF4A1                0.123   eukaryotic translation initiation factor 4A isoform 1...
EIF4A2                0.120   eukaryotic translation initiation factor 4A2 
DDX49                 0.120   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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