Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM19A3 Sequence: fasta or formatted (169aa) NCBI GI: 52486734
Description:

family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 isoform 2

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [133aa] family with sequence similarity 19 (chemokine (C-C motif)-like), ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         18           3
 C cysteine            7.1         12           2
 D aspartate           4.7          8           2
 E glutamate           3.6          6           2
 F phenylalanine       0.6          1           1
 G glycine             6.5         11           2
 H histidine           2.4          4           1
 I isoleucine          1.2          2           1
 K lysine              2.4          4           1
 L leucine            10.1         17           3
 M methionine          0.6          1           1
 N asparagine          1.8          3           1
 P proline             6.5         11           2
 Q glutamine           4.1          7           2
 R arginine           12.4         21           2
 S serine              9.5         16           2
 T threonine           6.5         11           2
 V valine              5.9         10           1
 W tryptophan          3.6          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 19 (chemokine (C-C m... 
FAM19A3               0.490   family with sequence similarity 19 (chemokine (C-C m...
FAM19A2               0.212   family with sequence similarity 19 (chemokine (C-C m...
FAM19A4               0.209   family with sequence similarity 19 (chemokine (C-C m...
FAM19A4               0.209   family with sequence similarity 19 (chemokine (C-C m...
FAM19A1               0.191   family with sequence similarity 19 (chemokine (C-C m...
FAM19A5               0.090   family with sequence similarity 19 (chemokine (C-C ...
FAM19A5               0.084   family with sequence similarity 19 (chemokine (C-C m...
LOC100292307          0.015   PREDICTED: hypothetical protein 
LOC100290778          0.015   PREDICTED: hypothetical protein XP_002346922 
LOC100288747          0.015   PREDICTED: hypothetical protein XP_002342803 
LOC100288747          0.015   PREDICTED: hypothetical protein 
CYTSB                 0.015   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.015   spectrin domain with coiled-coils 1 NSP5b3b 
CACNA1A               0.012   calcium channel, alpha 1A subunit isoform 4 
ATP10B                0.012   ATPase, class V, type 10B 
LOC100293519          0.009   PREDICTED: hypothetical protein 
LOC728052             0.009   PREDICTED: hypothetical protein 
LOC100287870          0.009   PREDICTED: hypothetical protein XP_002343158 
KCP                   0.009   cysteine rich BMP regulator 2 isoform 2 
KCP                   0.009   cysteine rich BMP regulator 2 isoform 1 
RP1L1                 0.009   retinitis pigmentosa 1-like 1 
EHBP1L1               0.009   tangerin 
PSTK                  0.009   phosphoseryl-tRNA kinase 
TECPR1                0.009   tectonin beta-propeller repeat containing 1 
TNRC6B                0.009   trinucleotide repeat containing 6B isoform 3 
LOC100128074          0.009   PREDICTED: hypothetical protein 
LRP1B                 0.009   low density lipoprotein-related protein 1B precursor...
TP53TG5               0.009   TP53-target gene 5 protein 
LRP1                  0.006   low density lipoprotein-related protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press